Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02961

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02960 and MPMX19_02961 are separated by 366 nucleotides MPMX19_02960: MPMX19_02960 - hypothetical protein, at 219,844 to 220,539 _02960 MPMX19_02961: MPMX19_02961 - Putative pyrimidine permease RutG, at 220,906 to 222,231 _02961 Position (kb) 220 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 219.908 kb on + strandat 219.908 kb on + strandat 219.909 kb on - strandat 219.918 kb on - strand, within MPMX19_02960at 219.918 kb on - strand, within MPMX19_02960at 220.648 kb on + strandat 220.648 kb on + strandat 220.649 kb on - strandat 220.649 kb on - strandat 220.649 kb on - strandat 220.749 kb on + strandat 220.749 kb on + strandat 220.801 kb on - strandat 220.801 kb on - strandat 220.801 kb on - strandat 220.982 kb on + strandat 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.618 kb on + strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.619 kb on - strand, within MPMX19_02961at 221.627 kb on + strand, within MPMX19_02961at 221.627 kb on + strand, within MPMX19_02961at 221.628 kb on - strand, within MPMX19_02961at 221.628 kb on - strand, within MPMX19_02961at 221.628 kb on - strand, within MPMX19_02961at 221.628 kb on - strand, within MPMX19_02961at 221.628 kb on - strand, within MPMX19_02961at 221.628 kb on - strand, within MPMX19_02961at 221.628 kb on - strand, within MPMX19_02961at 221.681 kb on + strand, within MPMX19_02961at 221.681 kb on + strand, within MPMX19_02961at 221.681 kb on + strand, within MPMX19_02961at 221.681 kb on + strand, within MPMX19_02961at 221.681 kb on + strand, within MPMX19_02961at 221.682 kb on - strand, within MPMX19_02961at 221.682 kb on - strand, within MPMX19_02961at 221.682 kb on - strand, within MPMX19_02961at 221.852 kb on + strand, within MPMX19_02961at 221.852 kb on + strand, within MPMX19_02961at 221.852 kb on + strand, within MPMX19_02961at 221.852 kb on + strand, within MPMX19_02961at 221.852 kb on + strand, within MPMX19_02961at 221.852 kb on + strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.853 kb on - strand, within MPMX19_02961at 221.879 kb on + strand, within MPMX19_02961at 221.879 kb on + strand, within MPMX19_02961at 221.879 kb on + strand, within MPMX19_02961at 221.879 kb on + strand, within MPMX19_02961at 221.879 kb on + strand, within MPMX19_02961at 221.880 kb on - strand, within MPMX19_02961at 221.880 kb on - strand, within MPMX19_02961at 221.880 kb on - strand, within MPMX19_02961at 221.880 kb on - strand, within MPMX19_02961at 221.880 kb on - strand, within MPMX19_02961at 221.880 kb on - strand, within MPMX19_02961at 221.999 kb on + strand, within MPMX19_02961at 221.999 kb on + strand, within MPMX19_02961at 221.999 kb on + strand, within MPMX19_02961at 221.999 kb on + strand, within MPMX19_02961at 221.999 kb on + strand, within MPMX19_02961at 222.000 kb on - strand, within MPMX19_02961at 222.231 kb on + strandat 222.231 kb on + strandat 222.231 kb on + strandat 222.231 kb on + strandat 222.231 kb on + strandat 222.231 kb on + strandat 222.232 kb on - strandat 222.232 kb on - strandat 222.232 kb on - strandat 222.232 kb on - strandat 222.232 kb on - strandat 222.232 kb on - strandat 222.232 kb on - strandat 222.320 kb on + strandat 222.397 kb on + strandat 222.397 kb on + strandat 222.397 kb on + strandat 222.398 kb on - strandat 222.466 kb on + strandat 222.477 kb on + strandat 222.480 kb on - strandat 222.486 kb on + strandat 222.487 kb on - strandat 222.509 kb on + strandat 222.521 kb on - strandat 222.531 kb on + strandat 222.651 kb on - strandat 222.651 kb on - strandat 222.738 kb on + strandat 222.739 kb on - strandat 222.791 kb on - strandat 222.840 kb on - strandat 223.018 kb on + strandat 223.085 kb on - strandat 223.114 kb on - strandat 223.165 kb on - strandat 223.229 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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219,908 + -1.1
219,908 + -1.3
219,909 - -0.5
219,918 - MPMX19_02960 0.11 -1.0
219,918 - MPMX19_02960 0.11 +0.9
220,648 + -0.0
220,648 + +0.0
220,649 - -1.9
220,649 - -2.2
220,649 - -0.4
220,749 + -2.3
220,749 + -1.2
220,801 - +0.0
220,801 - -0.7
220,801 - -2.0
220,982 + -0.5
221,327 + MPMX19_02961 0.32 -1.3
221,327 + MPMX19_02961 0.32 +0.9
221,327 + MPMX19_02961 0.32 -0.8
221,327 + MPMX19_02961 0.32 -1.3
221,327 + MPMX19_02961 0.32 -0.5
221,327 + MPMX19_02961 0.32 -0.5
221,327 + MPMX19_02961 0.32 -0.5
221,327 + MPMX19_02961 0.32 +0.0
221,327 + MPMX19_02961 0.32 -0.1
221,327 + MPMX19_02961 0.32 -0.2
221,327 + MPMX19_02961 0.32 +0.0
221,327 + MPMX19_02961 0.32 +0.0
221,327 + MPMX19_02961 0.32 -1.7
221,327 + MPMX19_02961 0.32 -0.8
221,327 + MPMX19_02961 0.32 +0.1
221,328 - MPMX19_02961 0.32 -2.0
221,328 - MPMX19_02961 0.32 -0.8
221,328 - MPMX19_02961 0.32 +0.0
221,328 - MPMX19_02961 0.32 -1.0
221,328 - MPMX19_02961 0.32 -0.5
221,328 - MPMX19_02961 0.32 -1.2
221,328 - MPMX19_02961 0.32 -0.2
221,328 - MPMX19_02961 0.32 +0.3
221,328 - MPMX19_02961 0.32 +0.2
221,328 - MPMX19_02961 0.32 -1.4
221,618 + MPMX19_02961 0.54 +0.0
221,618 + MPMX19_02961 0.54 -0.9
221,618 + MPMX19_02961 0.54 -1.8
221,618 + MPMX19_02961 0.54 -1.3
221,618 + MPMX19_02961 0.54 -0.5
221,618 + MPMX19_02961 0.54 -2.0
221,618 + MPMX19_02961 0.54 +0.6
221,618 + MPMX19_02961 0.54 +0.1
221,618 + MPMX19_02961 0.54 -0.9
221,618 + MPMX19_02961 0.54 +0.0
221,618 + MPMX19_02961 0.54 -0.9
221,618 + MPMX19_02961 0.54 -1.7
221,619 - MPMX19_02961 0.54 -0.3
221,619 - MPMX19_02961 0.54 -0.2
221,619 - MPMX19_02961 0.54 -2.7
221,619 - MPMX19_02961 0.54 -0.3
221,619 - MPMX19_02961 0.54 -1.1
221,619 - MPMX19_02961 0.54 -0.1
221,619 - MPMX19_02961 0.54 -0.8
221,619 - MPMX19_02961 0.54 -0.1
221,619 - MPMX19_02961 0.54 -2.3
221,619 - MPMX19_02961 0.54 +0.7
221,619 - MPMX19_02961 0.54 -1.1
221,619 - MPMX19_02961 0.54 -0.6
221,619 - MPMX19_02961 0.54 -1.3
221,619 - MPMX19_02961 0.54 +0.2
221,619 - MPMX19_02961 0.54 -1.0
221,619 - MPMX19_02961 0.54 -0.7
221,619 - MPMX19_02961 0.54 -1.8
221,619 - MPMX19_02961 0.54 -2.0
221,619 - MPMX19_02961 0.54 -1.4
221,627 + MPMX19_02961 0.54 +0.2
221,627 + MPMX19_02961 0.54 +0.9
221,628 - MPMX19_02961 0.54 -1.3
221,628 - MPMX19_02961 0.54 -0.4
221,628 - MPMX19_02961 0.54 -0.5
221,628 - MPMX19_02961 0.54 -0.9
221,628 - MPMX19_02961 0.54 +0.2
221,628 - MPMX19_02961 0.54 +1.0
221,628 - MPMX19_02961 0.54 -0.5
221,681 + MPMX19_02961 0.58 -1.9
221,681 + MPMX19_02961 0.58 -0.5
221,681 + MPMX19_02961 0.58 +0.3
221,681 + MPMX19_02961 0.58 +0.7
221,681 + MPMX19_02961 0.58 +0.4
221,682 - MPMX19_02961 0.59 -2.3
221,682 - MPMX19_02961 0.59 +0.1
221,682 - MPMX19_02961 0.59 +1.0
221,852 + MPMX19_02961 0.71 -0.3
221,852 + MPMX19_02961 0.71 -1.3
221,852 + MPMX19_02961 0.71 -2.7
221,852 + MPMX19_02961 0.71 -1.1
221,852 + MPMX19_02961 0.71 -1.6
221,852 + MPMX19_02961 0.71 -0.3
221,853 - MPMX19_02961 0.71 -2.0
221,853 - MPMX19_02961 0.71 +0.0
221,853 - MPMX19_02961 0.71 -1.8
221,853 - MPMX19_02961 0.71 -1.2
221,853 - MPMX19_02961 0.71 -1.1
221,853 - MPMX19_02961 0.71 -1.1
221,853 - MPMX19_02961 0.71 -2.8
221,853 - MPMX19_02961 0.71 -0.8
221,853 - MPMX19_02961 0.71 +0.0
221,853 - MPMX19_02961 0.71 +2.0
221,853 - MPMX19_02961 0.71 -0.8
221,853 - MPMX19_02961 0.71 -1.1
221,879 + MPMX19_02961 0.73 +0.0
221,879 + MPMX19_02961 0.73 +0.9
221,879 + MPMX19_02961 0.73 -0.1
221,879 + MPMX19_02961 0.73 +0.0
221,879 + MPMX19_02961 0.73 -0.5
221,880 - MPMX19_02961 0.73 -1.0
221,880 - MPMX19_02961 0.73 -1.3
221,880 - MPMX19_02961 0.73 +0.3
221,880 - MPMX19_02961 0.73 -1.0
221,880 - MPMX19_02961 0.73 -0.1
221,880 - MPMX19_02961 0.73 +0.2
221,999 + MPMX19_02961 0.82 -0.3
221,999 + MPMX19_02961 0.82 -1.3
221,999 + MPMX19_02961 0.82 -0.3
221,999 + MPMX19_02961 0.82 -0.4
221,999 + MPMX19_02961 0.82 -0.8
222,000 - MPMX19_02961 0.83 +0.5
222,231 + +0.5
222,231 + -0.3
222,231 + -1.5
222,231 + +0.5
222,231 + +1.3
222,231 + -2.7
222,232 - -0.7
222,232 - -1.5
222,232 - -1.3
222,232 - +0.3
222,232 - -1.1
222,232 - -1.5
222,232 - +0.2
222,320 + -0.8
222,397 + -1.4
222,397 + -0.2
222,397 + -0.8
222,398 - -0.7
222,466 + -1.1
222,477 + +1.1
222,480 - -0.7
222,486 + -0.8
222,487 - -1.7
222,509 + -1.2
222,521 - -1.4
222,531 + +0.7
222,651 - -1.0
222,651 - -0.1
222,738 + +0.6
222,739 - -0.5
222,791 - +0.8
222,840 - -2.0
223,018 + +0.1
223,085 - -2.2
223,114 - -2.2
223,165 - -0.5
223,229 - +1.0

Or see this region's nucleotide sequence