Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02960

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02959 and MPMX19_02960 are separated by 156 nucleotidesMPMX19_02960 and MPMX19_02961 are separated by 366 nucleotides MPMX19_02959: MPMX19_02959 - HTH-type transcriptional regulator DmlR, at 218,701 to 219,687 _02959 MPMX19_02960: MPMX19_02960 - hypothetical protein, at 219,844 to 220,539 _02960 MPMX19_02961: MPMX19_02961 - Putative pyrimidine permease RutG, at 220,906 to 222,231 _02961 Position (kb) 219 220 221Strain fitness (log2 ratio) -2 -1 0 1at 218.871 kb on - strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.005 kb on + strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.006 kb on - strand, within MPMX19_02959at 219.113 kb on + strand, within MPMX19_02959at 219.113 kb on + strand, within MPMX19_02959at 219.114 kb on - strand, within MPMX19_02959at 219.114 kb on - strand, within MPMX19_02959at 219.176 kb on + strand, within MPMX19_02959at 219.177 kb on - strand, within MPMX19_02959at 219.177 kb on - strand, within MPMX19_02959at 219.335 kb on + strand, within MPMX19_02959at 219.335 kb on + strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.336 kb on - strand, within MPMX19_02959at 219.494 kb on + strand, within MPMX19_02959at 219.494 kb on + strand, within MPMX19_02959at 219.495 kb on - strand, within MPMX19_02959at 219.495 kb on - strand, within MPMX19_02959at 219.753 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.791 kb on + strandat 219.792 kb on - strandat 219.908 kb on + strandat 219.908 kb on + strandat 219.909 kb on - strandat 219.918 kb on - strand, within MPMX19_02960at 219.918 kb on - strand, within MPMX19_02960at 220.648 kb on + strandat 220.648 kb on + strandat 220.649 kb on - strandat 220.649 kb on - strandat 220.649 kb on - strandat 220.749 kb on + strandat 220.749 kb on + strandat 220.801 kb on - strandat 220.801 kb on - strandat 220.801 kb on - strandat 220.982 kb on + strandat 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.327 kb on + strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961at 221.328 kb on - strand, within MPMX19_02961

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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218,871 - MPMX19_02959 0.17 -0.5
219,005 + MPMX19_02959 0.31 -1.0
219,005 + MPMX19_02959 0.31 +0.0
219,005 + MPMX19_02959 0.31 -0.5
219,005 + MPMX19_02959 0.31 +0.2
219,005 + MPMX19_02959 0.31 +1.0
219,005 + MPMX19_02959 0.31 -1.0
219,005 + MPMX19_02959 0.31 +0.2
219,005 + MPMX19_02959 0.31 -1.0
219,006 - MPMX19_02959 0.31 -0.3
219,006 - MPMX19_02959 0.31 +0.2
219,006 - MPMX19_02959 0.31 -0.7
219,006 - MPMX19_02959 0.31 -0.8
219,006 - MPMX19_02959 0.31 -0.4
219,006 - MPMX19_02959 0.31 -0.9
219,006 - MPMX19_02959 0.31 -0.1
219,006 - MPMX19_02959 0.31 -0.5
219,006 - MPMX19_02959 0.31 +0.5
219,113 + MPMX19_02959 0.42 +0.3
219,113 + MPMX19_02959 0.42 -1.3
219,114 - MPMX19_02959 0.42 -0.4
219,114 - MPMX19_02959 0.42 +0.3
219,176 + MPMX19_02959 0.48 +0.9
219,177 - MPMX19_02959 0.48 +0.9
219,177 - MPMX19_02959 0.48 -1.9
219,335 + MPMX19_02959 0.64 +0.6
219,335 + MPMX19_02959 0.64 -0.8
219,336 - MPMX19_02959 0.64 -0.5
219,336 - MPMX19_02959 0.64 +0.0
219,336 - MPMX19_02959 0.64 -0.2
219,336 - MPMX19_02959 0.64 -0.3
219,494 + MPMX19_02959 0.80 +1.2
219,494 + MPMX19_02959 0.80 -1.2
219,495 - MPMX19_02959 0.80 +0.5
219,495 - MPMX19_02959 0.80 -1.0
219,753 + -0.5
219,791 + -0.8
219,791 + +0.7
219,791 + -1.3
219,791 + -0.8
219,791 + -1.4
219,792 - -1.7
219,908 + -1.1
219,908 + -1.3
219,909 - -0.5
219,918 - MPMX19_02960 0.11 -1.0
219,918 - MPMX19_02960 0.11 +0.9
220,648 + -0.0
220,648 + +0.0
220,649 - -1.9
220,649 - -2.2
220,649 - -0.4
220,749 + -2.3
220,749 + -1.2
220,801 - +0.0
220,801 - -0.7
220,801 - -2.0
220,982 + -0.5
221,327 + MPMX19_02961 0.32 -1.3
221,327 + MPMX19_02961 0.32 +0.9
221,327 + MPMX19_02961 0.32 -0.8
221,327 + MPMX19_02961 0.32 -1.3
221,327 + MPMX19_02961 0.32 -0.5
221,327 + MPMX19_02961 0.32 -0.5
221,327 + MPMX19_02961 0.32 -0.5
221,327 + MPMX19_02961 0.32 +0.0
221,327 + MPMX19_02961 0.32 -0.1
221,327 + MPMX19_02961 0.32 -0.2
221,327 + MPMX19_02961 0.32 +0.0
221,327 + MPMX19_02961 0.32 +0.0
221,327 + MPMX19_02961 0.32 -1.7
221,327 + MPMX19_02961 0.32 -0.8
221,327 + MPMX19_02961 0.32 +0.1
221,328 - MPMX19_02961 0.32 -2.0
221,328 - MPMX19_02961 0.32 -0.8
221,328 - MPMX19_02961 0.32 +0.0
221,328 - MPMX19_02961 0.32 -1.0
221,328 - MPMX19_02961 0.32 -0.5
221,328 - MPMX19_02961 0.32 -1.2
221,328 - MPMX19_02961 0.32 -0.2
221,328 - MPMX19_02961 0.32 +0.3
221,328 - MPMX19_02961 0.32 +0.2
221,328 - MPMX19_02961 0.32 -1.4

Or see this region's nucleotide sequence