Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02952

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02951 and MPMX19_02952 are separated by 186 nucleotidesMPMX19_02952 and MPMX19_02953 are separated by 84 nucleotides MPMX19_02951: MPMX19_02951 - Deoxyribose-phosphate aldolase 1, at 209,471 to 210,142 _02951 MPMX19_02952: MPMX19_02952 - Autoinducer 2-binding protein LsrB, at 210,329 to 211,375 _02952 MPMX19_02953: MPMX19_02953 - Ribose import ATP-binding protein RbsA, at 211,460 to 212,962 _02953 Position (kb) 210 211 212Strain fitness (log2 ratio) -3 -2 -1 0 1at 209.527 kb on + strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.527 kb on + strandat 209.528 kb on - strandat 209.805 kb on + strand, within MPMX19_02951at 209.805 kb on + strand, within MPMX19_02951at 209.806 kb on + strand, within MPMX19_02951at 209.806 kb on - strand, within MPMX19_02951at 209.806 kb on - strand, within MPMX19_02951at 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.163 kb on + strandat 210.164 kb on - strandat 210.164 kb on - strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.168 kb on + strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.169 kb on - strandat 210.455 kb on + strand, within MPMX19_02952at 210.455 kb on + strand, within MPMX19_02952at 210.455 kb on + strand, within MPMX19_02952at 210.455 kb on + strand, within MPMX19_02952at 210.456 kb on - strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.746 kb on + strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.747 kb on - strand, within MPMX19_02952at 210.776 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.830 kb on + strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.831 kb on - strand, within MPMX19_02952at 210.897 kb on - strand, within MPMX19_02952at 210.897 kb on - strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.950 kb on + strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.951 kb on - strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.971 kb on + strand, within MPMX19_02952at 210.972 kb on - strand, within MPMX19_02952at 211.001 kb on + strand, within MPMX19_02952at 211.002 kb on - strand, within MPMX19_02952at 211.002 kb on - strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.133 kb on + strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.134 kb on - strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.157 kb on + strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.158 kb on - strand, within MPMX19_02952at 211.191 kb on - strand, within MPMX19_02952at 211.275 kb on - strandat 211.275 kb on - strandat 211.320 kb on - strandat 211.320 kb on - strandat 211.320 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.365 kb on - strandat 211.623 kb on - strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.715 kb on + strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 211.716 kb on - strand, within MPMX19_02953at 212.201 kb on + strand, within MPMX19_02953at 212.201 kb on + strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953at 212.202 kb on - strand, within MPMX19_02953

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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209,527 + -2.0
209,527 + -1.3
209,527 + -1.1
209,527 + -1.8
209,528 - +1.5
209,805 + MPMX19_02951 0.50 -2.3
209,805 + MPMX19_02951 0.50 -0.4
209,806 + MPMX19_02951 0.50 +1.0
209,806 - MPMX19_02951 0.50 +1.0
209,806 - MPMX19_02951 0.50 -0.5
210,163 + -1.7
210,163 + -1.9
210,163 + -1.0
210,163 + -1.0
210,163 + -0.4
210,163 + -2.0
210,163 + -1.0
210,164 - +0.3
210,164 - -0.7
210,168 + -0.5
210,168 + -1.1
210,168 + +0.5
210,168 + -0.9
210,169 - -2.5
210,169 - -0.4
210,169 - -0.8
210,169 - -1.5
210,455 + MPMX19_02952 0.12 +0.2
210,455 + MPMX19_02952 0.12 -0.2
210,455 + MPMX19_02952 0.12 -0.1
210,455 + MPMX19_02952 0.12 -0.3
210,456 - MPMX19_02952 0.12 -1.8
210,746 + MPMX19_02952 0.40 -1.1
210,746 + MPMX19_02952 0.40 -0.4
210,746 + MPMX19_02952 0.40 -0.8
210,746 + MPMX19_02952 0.40 -0.1
210,746 + MPMX19_02952 0.40 -0.4
210,747 - MPMX19_02952 0.40 -1.1
210,747 - MPMX19_02952 0.40 -1.4
210,747 - MPMX19_02952 0.40 -2.7
210,747 - MPMX19_02952 0.40 -2.3
210,747 - MPMX19_02952 0.40 -0.8
210,747 - MPMX19_02952 0.40 -2.3
210,776 + MPMX19_02952 0.43 +0.2
210,830 + MPMX19_02952 0.48 +0.3
210,830 + MPMX19_02952 0.48 +1.0
210,830 + MPMX19_02952 0.48 +0.2
210,830 + MPMX19_02952 0.48 -1.9
210,830 + MPMX19_02952 0.48 -1.2
210,830 + MPMX19_02952 0.48 +0.3
210,830 + MPMX19_02952 0.48 +0.7
210,830 + MPMX19_02952 0.48 -1.1
210,830 + MPMX19_02952 0.48 +0.1
210,830 + MPMX19_02952 0.48 -2.6
210,830 + MPMX19_02952 0.48 -1.0
210,830 + MPMX19_02952 0.48 -1.5
210,830 + MPMX19_02952 0.48 -0.3
210,830 + MPMX19_02952 0.48 -1.3
210,831 - MPMX19_02952 0.48 -2.5
210,831 - MPMX19_02952 0.48 -3.0
210,831 - MPMX19_02952 0.48 -0.4
210,831 - MPMX19_02952 0.48 +0.2
210,831 - MPMX19_02952 0.48 -0.7
210,831 - MPMX19_02952 0.48 +0.1
210,831 - MPMX19_02952 0.48 +0.1
210,831 - MPMX19_02952 0.48 +0.7
210,831 - MPMX19_02952 0.48 -0.8
210,897 - MPMX19_02952 0.54 -2.2
210,897 - MPMX19_02952 0.54 +0.0
210,950 + MPMX19_02952 0.59 +0.2
210,950 + MPMX19_02952 0.59 -1.3
210,950 + MPMX19_02952 0.59 +0.5
210,950 + MPMX19_02952 0.59 +0.9
210,950 + MPMX19_02952 0.59 -0.4
210,951 - MPMX19_02952 0.59 -0.8
210,951 - MPMX19_02952 0.59 +0.1
210,951 - MPMX19_02952 0.59 -0.3
210,971 + MPMX19_02952 0.61 -0.8
210,971 + MPMX19_02952 0.61 -1.2
210,971 + MPMX19_02952 0.61 -0.1
210,971 + MPMX19_02952 0.61 -0.7
210,972 - MPMX19_02952 0.61 -1.5
211,001 + MPMX19_02952 0.64 -1.4
211,002 - MPMX19_02952 0.64 -0.5
211,002 - MPMX19_02952 0.64 -1.5
211,133 + MPMX19_02952 0.77 -1.0
211,133 + MPMX19_02952 0.77 -0.4
211,133 + MPMX19_02952 0.77 -0.1
211,134 - MPMX19_02952 0.77 -0.3
211,134 - MPMX19_02952 0.77 -2.8
211,134 - MPMX19_02952 0.77 -2.0
211,134 - MPMX19_02952 0.77 -0.3
211,134 - MPMX19_02952 0.77 -1.3
211,157 + MPMX19_02952 0.79 -1.3
211,157 + MPMX19_02952 0.79 -1.9
211,157 + MPMX19_02952 0.79 -1.0
211,157 + MPMX19_02952 0.79 -2.3
211,157 + MPMX19_02952 0.79 -0.8
211,157 + MPMX19_02952 0.79 -1.0
211,157 + MPMX19_02952 0.79 -2.4
211,157 + MPMX19_02952 0.79 -0.9
211,158 - MPMX19_02952 0.79 -0.9
211,158 - MPMX19_02952 0.79 -0.5
211,158 - MPMX19_02952 0.79 -0.2
211,158 - MPMX19_02952 0.79 -1.0
211,158 - MPMX19_02952 0.79 +0.3
211,191 - MPMX19_02952 0.82 +0.3
211,275 - -0.4
211,275 - -0.2
211,320 - -1.9
211,320 - +0.5
211,320 - +0.2
211,365 - -0.8
211,365 - -2.0
211,365 - -0.8
211,365 - -0.6
211,365 - -2.0
211,365 - -2.0
211,623 - MPMX19_02953 0.11 -0.1
211,715 + MPMX19_02953 0.17 +1.6
211,715 + MPMX19_02953 0.17 +0.3
211,715 + MPMX19_02953 0.17 -1.3
211,715 + MPMX19_02953 0.17 -0.3
211,715 + MPMX19_02953 0.17 -1.3
211,716 - MPMX19_02953 0.17 -1.4
211,716 - MPMX19_02953 0.17 -1.0
211,716 - MPMX19_02953 0.17 +0.9
211,716 - MPMX19_02953 0.17 -0.5
212,201 + MPMX19_02953 0.49 -0.2
212,201 + MPMX19_02953 0.49 +0.3
212,202 - MPMX19_02953 0.49 -0.2
212,202 - MPMX19_02953 0.49 -2.2
212,202 - MPMX19_02953 0.49 -0.3
212,202 - MPMX19_02953 0.49 -1.5

Or see this region's nucleotide sequence