Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02940

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02939 and MPMX19_02940 are separated by 10 nucleotidesMPMX19_02940 and MPMX19_02941 are separated by 335 nucleotides MPMX19_02939: MPMX19_02939 - Putative formate dehydrogenase, at 193,574 to 196,345 _02939 MPMX19_02940: MPMX19_02940 - hypothetical protein, at 196,356 to 198,143 _02940 MPMX19_02941: MPMX19_02941 - Fructose-bisphosphate aldolase, at 198,479 to 199,570 _02941 Position (kb) 196 197 198 199Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 195.522 kb on + strand, within MPMX19_02939at 195.522 kb on + strand, within MPMX19_02939at 195.523 kb on - strand, within MPMX19_02939at 195.523 kb on - strand, within MPMX19_02939at 195.523 kb on - strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.616 kb on + strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.617 kb on - strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.618 kb on + strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.619 kb on - strand, within MPMX19_02939at 195.645 kb on + strand, within MPMX19_02939at 195.645 kb on + strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.646 kb on - strand, within MPMX19_02939at 195.687 kb on + strand, within MPMX19_02939at 195.687 kb on + strand, within MPMX19_02939at 195.687 kb on + strand, within MPMX19_02939at 195.688 kb on - strand, within MPMX19_02939at 195.688 kb on - strand, within MPMX19_02939at 196.357 kb on + strandat 196.358 kb on - strandat 196.358 kb on - strandat 196.783 kb on + strand, within MPMX19_02940at 196.784 kb on - strand, within MPMX19_02940at 196.784 kb on - strand, within MPMX19_02940at 196.784 kb on - strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 196.822 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.119 kb on + strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.120 kb on - strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.236 kb on + strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.237 kb on - strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.242 kb on + strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.243 kb on - strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.398 kb on + strand, within MPMX19_02940at 197.399 kb on - strand, within MPMX19_02940at 197.399 kb on - strand, within MPMX19_02940at 197.399 kb on - strand, within MPMX19_02940at 197.521 kb on + strand, within MPMX19_02940at 197.521 kb on + strand, within MPMX19_02940at 197.521 kb on + strand, within MPMX19_02940at 197.522 kb on - strand, within MPMX19_02940at 197.522 kb on - strand, within MPMX19_02940at 197.522 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.540 kb on - strand, within MPMX19_02940at 197.557 kb on + strand, within MPMX19_02940at 197.557 kb on + strand, within MPMX19_02940at 197.558 kb on - strand, within MPMX19_02940at 197.558 kb on - strand, within MPMX19_02940at 197.558 kb on - strand, within MPMX19_02940at 197.842 kb on + strand, within MPMX19_02940at 197.842 kb on + strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.843 kb on - strand, within MPMX19_02940at 197.929 kb on + strand, within MPMX19_02940at 198.003 kb on + strandat 198.004 kb on - strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.309 kb on + strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.310 kb on - strandat 198.317 kb on + strandat 198.317 kb on + strandat 198.318 kb on - strandat 198.359 kb on + strandat 198.359 kb on + strandat 198.359 kb on + strandat 198.360 kb on - strandat 198.360 kb on - strandat 198.389 kb on + strandat 198.389 kb on + strandat 198.389 kb on + strandat 198.389 kb on + strandat 198.390 kb on - strandat 198.390 kb on - strandat 198.390 kb on - strandat 198.390 kb on - strandat 198.804 kb on + strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.805 kb on - strand, within MPMX19_02941at 198.969 kb on + strand, within MPMX19_02941at 198.969 kb on + strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941at 198.970 kb on - strand, within MPMX19_02941

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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195,522 + MPMX19_02939 0.70 -1.1
195,522 + MPMX19_02939 0.70 -0.4
195,523 - MPMX19_02939 0.70 -0.9
195,523 - MPMX19_02939 0.70 -1.5
195,523 - MPMX19_02939 0.70 +0.1
195,616 + MPMX19_02939 0.74 +0.1
195,616 + MPMX19_02939 0.74 -1.5
195,616 + MPMX19_02939 0.74 -0.3
195,616 + MPMX19_02939 0.74 -0.2
195,616 + MPMX19_02939 0.74 -1.6
195,616 + MPMX19_02939 0.74 -1.5
195,616 + MPMX19_02939 0.74 -0.1
195,616 + MPMX19_02939 0.74 -0.8
195,616 + MPMX19_02939 0.74 -0.4
195,616 + MPMX19_02939 0.74 -0.5
195,617 - MPMX19_02939 0.74 -1.1
195,617 - MPMX19_02939 0.74 -0.3
195,617 - MPMX19_02939 0.74 -0.6
195,617 - MPMX19_02939 0.74 +0.5
195,617 - MPMX19_02939 0.74 -0.3
195,617 - MPMX19_02939 0.74 -1.3
195,617 - MPMX19_02939 0.74 +0.2
195,618 + MPMX19_02939 0.74 -1.4
195,618 + MPMX19_02939 0.74 -0.4
195,618 + MPMX19_02939 0.74 +1.2
195,618 + MPMX19_02939 0.74 -0.5
195,618 + MPMX19_02939 0.74 -0.7
195,618 + MPMX19_02939 0.74 -1.9
195,619 - MPMX19_02939 0.74 -2.8
195,619 - MPMX19_02939 0.74 -1.5
195,619 - MPMX19_02939 0.74 +0.1
195,619 - MPMX19_02939 0.74 -2.9
195,645 + MPMX19_02939 0.75 +0.1
195,645 + MPMX19_02939 0.75 -0.4
195,646 - MPMX19_02939 0.75 -0.8
195,646 - MPMX19_02939 0.75 -1.2
195,646 - MPMX19_02939 0.75 -0.3
195,646 - MPMX19_02939 0.75 -1.6
195,646 - MPMX19_02939 0.75 +1.1
195,687 + MPMX19_02939 0.76 -0.3
195,687 + MPMX19_02939 0.76 +0.8
195,687 + MPMX19_02939 0.76 -0.3
195,688 - MPMX19_02939 0.76 +0.1
195,688 - MPMX19_02939 0.76 -1.6
196,357 + -0.1
196,358 - -0.8
196,358 - +0.1
196,783 + MPMX19_02940 0.24 +0.2
196,784 - MPMX19_02940 0.24 -0.5
196,784 - MPMX19_02940 0.24 -0.9
196,784 - MPMX19_02940 0.24 -1.7
196,822 + MPMX19_02940 0.26 +0.6
196,822 + MPMX19_02940 0.26 -0.5
196,822 + MPMX19_02940 0.26 -0.9
196,822 + MPMX19_02940 0.26 -0.6
197,119 + MPMX19_02940 0.43 +0.7
197,119 + MPMX19_02940 0.43 -0.1
197,119 + MPMX19_02940 0.43 -0.5
197,119 + MPMX19_02940 0.43 -0.9
197,120 - MPMX19_02940 0.43 +0.5
197,120 - MPMX19_02940 0.43 -0.9
197,120 - MPMX19_02940 0.43 -0.6
197,120 - MPMX19_02940 0.43 -1.3
197,120 - MPMX19_02940 0.43 -1.4
197,120 - MPMX19_02940 0.43 +0.6
197,236 + MPMX19_02940 0.49 -1.1
197,236 + MPMX19_02940 0.49 -0.3
197,236 + MPMX19_02940 0.49 -0.3
197,236 + MPMX19_02940 0.49 -1.3
197,236 + MPMX19_02940 0.49 -2.4
197,236 + MPMX19_02940 0.49 +0.1
197,237 - MPMX19_02940 0.49 -0.6
197,237 - MPMX19_02940 0.49 +0.1
197,237 - MPMX19_02940 0.49 -1.3
197,237 - MPMX19_02940 0.49 +0.3
197,237 - MPMX19_02940 0.49 -2.1
197,237 - MPMX19_02940 0.49 -1.0
197,237 - MPMX19_02940 0.49 -1.0
197,242 + MPMX19_02940 0.50 -1.1
197,242 + MPMX19_02940 0.50 +0.5
197,242 + MPMX19_02940 0.50 -1.2
197,242 + MPMX19_02940 0.50 +0.1
197,243 - MPMX19_02940 0.50 -1.0
197,243 - MPMX19_02940 0.50 -0.9
197,243 - MPMX19_02940 0.50 -1.0
197,243 - MPMX19_02940 0.50 +0.5
197,243 - MPMX19_02940 0.50 -0.9
197,398 + MPMX19_02940 0.58 -0.1
197,398 + MPMX19_02940 0.58 -1.1
197,398 + MPMX19_02940 0.58 -1.4
197,398 + MPMX19_02940 0.58 -0.8
197,398 + MPMX19_02940 0.58 -0.5
197,398 + MPMX19_02940 0.58 +0.1
197,398 + MPMX19_02940 0.58 -1.7
197,398 + MPMX19_02940 0.58 -1.5
197,398 + MPMX19_02940 0.58 -0.7
197,398 + MPMX19_02940 0.58 -2.1
197,399 - MPMX19_02940 0.58 -0.9
197,399 - MPMX19_02940 0.58 +0.1
197,399 - MPMX19_02940 0.58 +0.8
197,521 + MPMX19_02940 0.65 -1.5
197,521 + MPMX19_02940 0.65 +1.1
197,521 + MPMX19_02940 0.65 -0.9
197,522 - MPMX19_02940 0.65 -2.1
197,522 - MPMX19_02940 0.65 -1.3
197,522 - MPMX19_02940 0.65 -0.8
197,540 - MPMX19_02940 0.66 +0.9
197,540 - MPMX19_02940 0.66 -1.4
197,540 - MPMX19_02940 0.66 -1.2
197,540 - MPMX19_02940 0.66 -0.3
197,540 - MPMX19_02940 0.66 +0.7
197,557 + MPMX19_02940 0.67 -0.6
197,557 + MPMX19_02940 0.67 -0.9
197,558 - MPMX19_02940 0.67 -0.3
197,558 - MPMX19_02940 0.67 -1.3
197,558 - MPMX19_02940 0.67 +1.1
197,842 + MPMX19_02940 0.83 -0.5
197,842 + MPMX19_02940 0.83 -1.2
197,843 - MPMX19_02940 0.83 -1.7
197,843 - MPMX19_02940 0.83 -1.8
197,843 - MPMX19_02940 0.83 +0.7
197,843 - MPMX19_02940 0.83 -0.5
197,843 - MPMX19_02940 0.83 +0.5
197,843 - MPMX19_02940 0.83 -0.5
197,929 + MPMX19_02940 0.88 +0.1
198,003 + +0.2
198,004 - -0.3
198,309 + +0.5
198,309 + +0.9
198,309 + -0.3
198,309 + -0.8
198,309 + -1.0
198,309 + +1.0
198,309 + +0.2
198,309 + -0.3
198,309 + +0.5
198,309 + -0.8
198,310 - -1.7
198,310 - +0.0
198,310 - +0.0
198,310 - -0.8
198,310 - -0.5
198,317 + -1.0
198,317 + -1.3
198,318 - +0.0
198,359 + -0.1
198,359 + +1.7
198,359 + +2.0
198,360 - +0.3
198,360 - +1.2
198,389 + +0.5
198,389 + -1.7
198,389 + +0.7
198,389 + -1.9
198,390 - -1.0
198,390 - +0.7
198,390 - +0.2
198,390 - -1.0
198,804 + MPMX19_02941 0.30 -1.3
198,805 - MPMX19_02941 0.30 -0.8
198,805 - MPMX19_02941 0.30 +1.8
198,805 - MPMX19_02941 0.30 -0.2
198,805 - MPMX19_02941 0.30 -0.5
198,969 + MPMX19_02941 0.45 -2.4
198,969 + MPMX19_02941 0.45 -0.1
198,970 - MPMX19_02941 0.45 +0.9
198,970 - MPMX19_02941 0.45 -0.3
198,970 - MPMX19_02941 0.45 -1.0
198,970 - MPMX19_02941 0.45 -0.4

Or see this region's nucleotide sequence