Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02937

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02935 and MPMX19_02936 are separated by 9 nucleotidesMPMX19_02936 and MPMX19_02937 are separated by 66 nucleotidesMPMX19_02937 and MPMX19_02938 are separated by 24 nucleotidesMPMX19_02938 and MPMX19_02939 are separated by 71 nucleotides MPMX19_02935: MPMX19_02935 - hypothetical protein, at 190,473 to 191,816 _02935 MPMX19_02936: MPMX19_02936 - hypothetical protein, at 191,826 to 192,464 _02936 MPMX19_02937: MPMX19_02937 - hypothetical protein, at 192,531 to 193,034 _02937 MPMX19_02938: MPMX19_02938 - hypothetical protein, at 193,059 to 193,502 _02938 MPMX19_02939: MPMX19_02939 - Putative formate dehydrogenase, at 193,574 to 196,345 _02939 Position (kb) 192 193 194Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 191.571 kb on + strand, within MPMX19_02935at 191.571 kb on + strand, within MPMX19_02935at 191.571 kb on + strand, within MPMX19_02935at 191.587 kb on + strand, within MPMX19_02935at 191.588 kb on - strand, within MPMX19_02935at 192.215 kb on + strand, within MPMX19_02936at 192.215 kb on + strand, within MPMX19_02936at 192.216 kb on - strand, within MPMX19_02936at 192.455 kb on - strandat 192.729 kb on + strand, within MPMX19_02937at 192.729 kb on + strand, within MPMX19_02937at 192.729 kb on + strand, within MPMX19_02937at 192.730 kb on - strand, within MPMX19_02937at 192.730 kb on - strand, within MPMX19_02937at 193.146 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.167 kb on + strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.168 kb on - strand, within MPMX19_02938at 193.299 kb on + strand, within MPMX19_02938at 193.299 kb on + strand, within MPMX19_02938at 193.300 kb on - strand, within MPMX19_02938at 193.300 kb on - strand, within MPMX19_02938at 193.300 kb on - strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.305 kb on + strand, within MPMX19_02938at 193.306 kb on - strand, within MPMX19_02938at 193.306 kb on - strand, within MPMX19_02938at 193.501 kb on - strandat 193.501 kb on - strandat 193.576 kb on - strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.788 kb on + strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.789 kb on - strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.836 kb on + strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strandat 193.837 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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191,571 + MPMX19_02935 0.82 +0.5
191,571 + MPMX19_02935 0.82 +0.2
191,571 + MPMX19_02935 0.82 -0.0
191,587 + MPMX19_02935 0.83 -0.5
191,588 - MPMX19_02935 0.83 -0.1
192,215 + MPMX19_02936 0.61 +3.6
192,215 + MPMX19_02936 0.61 -1.5
192,216 - MPMX19_02936 0.61 -0.5
192,455 - -0.9
192,729 + MPMX19_02937 0.39 +0.2
192,729 + MPMX19_02937 0.39 +1.8
192,729 + MPMX19_02937 0.39 -0.6
192,730 - MPMX19_02937 0.39 +0.4
192,730 - MPMX19_02937 0.39 +2.1
193,146 + MPMX19_02938 0.20 -1.3
193,167 + MPMX19_02938 0.24 +0.1
193,167 + MPMX19_02938 0.24 +0.5
193,167 + MPMX19_02938 0.24 -1.1
193,167 + MPMX19_02938 0.24 +0.6
193,168 - MPMX19_02938 0.25 +1.3
193,168 - MPMX19_02938 0.25 +0.6
193,168 - MPMX19_02938 0.25 -0.8
193,168 - MPMX19_02938 0.25 +0.5
193,168 - MPMX19_02938 0.25 -1.5
193,299 + MPMX19_02938 0.54 -2.1
193,299 + MPMX19_02938 0.54 -0.5
193,300 - MPMX19_02938 0.54 -1.5
193,300 - MPMX19_02938 0.54 -0.6
193,300 - MPMX19_02938 0.54 +0.2
193,305 + MPMX19_02938 0.55 -0.2
193,305 + MPMX19_02938 0.55 -0.5
193,305 + MPMX19_02938 0.55 -0.0
193,305 + MPMX19_02938 0.55 +1.6
193,305 + MPMX19_02938 0.55 -0.4
193,305 + MPMX19_02938 0.55 +0.5
193,306 - MPMX19_02938 0.56 -0.1
193,306 - MPMX19_02938 0.56 -0.5
193,501 - +0.6
193,501 - -0.9
193,576 - -1.3
193,788 + -0.4
193,788 + -0.5
193,788 + +0.6
193,788 + -1.7
193,788 + +0.1
193,788 + +1.2
193,788 + -2.8
193,788 + -1.3
193,788 + -0.9
193,789 - -1.1
193,789 - +0.2
193,789 - +0.0
193,789 - -0.9
193,789 - -1.5
193,789 - -0.3
193,789 - +0.1
193,789 - -0.4
193,789 - +0.1
193,789 - -0.8
193,836 + -1.9
193,836 + +0.1
193,836 + -2.3
193,836 + -0.9
193,836 + -0.1
193,836 + -0.1
193,836 + -1.1
193,836 + -1.4
193,836 + -2.6
193,836 + -0.6
193,836 + -1.3
193,836 + +0.1
193,836 + -1.3
193,836 + -1.2
193,837 - +1.1
193,837 - +0.3
193,837 - +0.2
193,837 - -0.1
193,837 - -0.6
193,837 - -0.6
193,837 - -0.1

Or see this region's nucleotide sequence