Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02927

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02925 and MPMX19_02926 are separated by 147 nucleotidesMPMX19_02926 and MPMX19_02927 are separated by 315 nucleotidesMPMX19_02927 and MPMX19_02928 are separated by 545 nucleotides MPMX19_02925: MPMX19_02925 - Hydrazine synthase subunit beta, at 180,009 to 180,983 _02925 MPMX19_02926: MPMX19_02926 - hypothetical protein, at 181,131 to 181,514 _02926 MPMX19_02927: MPMX19_02927 - 5,6,7,8-tetrahydromethanopterin hydro-lyase, at 181,830 to 182,357 _02927 MPMX19_02928: MPMX19_02928 - hypothetical protein, at 182,903 to 183,739 _02928 Position (kb) 181 182 183Strain fitness (log2 ratio) -3 -2 -1 0 1at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.870 kb on + strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 180.871 kb on - strand, within MPMX19_02925at 181.151 kb on - strandat 181.512 kb on + strandat 181.573 kb on + strandat 181.573 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.608 kb on + strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.609 kb on - strandat 181.610 kb on + strandat 181.610 kb on + strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.611 kb on - strandat 181.648 kb on - strandat 181.648 kb on - strandat 181.696 kb on + strandat 181.697 kb on - strandat 181.697 kb on - strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.730 kb on + strandat 181.731 kb on - strandat 181.731 kb on - strandat 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.247 kb on + strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.248 kb on - strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.253 kb on + strand, within MPMX19_02927at 182.254 kb on - strand, within MPMX19_02927at 182.445 kb on - strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.476 kb on + strandat 182.477 kb on - strandat 182.477 kb on - strandat 182.477 kb on - strandat 182.836 kb on + strandat 182.836 kb on + strandat 182.836 kb on + strandat 182.837 kb on - strandat 182.854 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.967 kb on + strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 182.968 kb on - strandat 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.072 kb on + strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.073 kb on - strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.135 kb on + strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.136 kb on - strand, within MPMX19_02928at 183.223 kb on - strand, within MPMX19_02928

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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180,870 + MPMX19_02925 0.88 -0.9
180,870 + MPMX19_02925 0.88 +1.6
180,870 + MPMX19_02925 0.88 -0.4
180,870 + MPMX19_02925 0.88 +0.2
180,870 + MPMX19_02925 0.88 -0.4
180,871 - MPMX19_02925 0.88 -0.0
180,871 - MPMX19_02925 0.88 +0.7
180,871 - MPMX19_02925 0.88 -1.3
181,151 - -0.9
181,512 + -0.4
181,573 + -0.8
181,573 + -1.0
181,608 + -1.5
181,608 + -0.8
181,608 + -1.3
181,608 + +0.4
181,608 + +0.1
181,608 + +0.1
181,608 + -1.3
181,609 - +0.3
181,609 - +0.3
181,609 - -1.3
181,609 - -1.8
181,609 - +0.6
181,610 + -0.3
181,610 + -1.7
181,611 - -1.9
181,611 - -0.8
181,611 - +0.6
181,648 - -0.2
181,648 - -0.6
181,696 + -1.1
181,697 - -0.9
181,697 - -0.0
181,730 + -0.6
181,730 + -0.6
181,730 + -1.1
181,731 - -0.5
181,731 - -1.5
182,247 + MPMX19_02927 0.79 -0.4
182,247 + MPMX19_02927 0.79 -1.8
182,247 + MPMX19_02927 0.79 -1.1
182,248 - MPMX19_02927 0.79 -0.8
182,248 - MPMX19_02927 0.79 -1.5
182,248 - MPMX19_02927 0.79 -0.3
182,248 - MPMX19_02927 0.79 +0.5
182,253 + MPMX19_02927 0.80 +0.5
182,253 + MPMX19_02927 0.80 -1.2
182,254 - MPMX19_02927 0.80 -1.3
182,445 - +0.5
182,476 + -1.9
182,476 + -0.5
182,476 + +0.1
182,476 + +1.2
182,477 - -1.1
182,477 - -0.5
182,477 - -0.9
182,836 + -0.1
182,836 + -0.5
182,836 + -0.1
182,837 - +1.1
182,854 + -1.4
182,967 + -0.8
182,967 + -2.5
182,967 + -0.4
182,967 + -0.0
182,968 - +0.5
182,968 - -1.2
182,968 - +0.5
182,968 - -0.8
182,968 - -0.8
182,968 - -0.4
182,968 - -1.3
183,072 + MPMX19_02928 0.20 -0.3
183,072 + MPMX19_02928 0.20 +0.1
183,072 + MPMX19_02928 0.20 -1.4
183,072 + MPMX19_02928 0.20 -1.4
183,072 + MPMX19_02928 0.20 -0.7
183,072 + MPMX19_02928 0.20 -1.5
183,072 + MPMX19_02928 0.20 +0.1
183,072 + MPMX19_02928 0.20 -2.6
183,072 + MPMX19_02928 0.20 -0.2
183,073 - MPMX19_02928 0.20 -1.3
183,073 - MPMX19_02928 0.20 -0.2
183,073 - MPMX19_02928 0.20 +0.1
183,135 + MPMX19_02928 0.28 +0.1
183,135 + MPMX19_02928 0.28 +1.2
183,135 + MPMX19_02928 0.28 +1.0
183,135 + MPMX19_02928 0.28 -0.5
183,135 + MPMX19_02928 0.28 -0.3
183,135 + MPMX19_02928 0.28 -0.2
183,135 + MPMX19_02928 0.28 +0.4
183,135 + MPMX19_02928 0.28 +0.5
183,135 + MPMX19_02928 0.28 -0.3
183,135 + MPMX19_02928 0.28 -1.4
183,135 + MPMX19_02928 0.28 -0.3
183,135 + MPMX19_02928 0.28 +0.1
183,136 - MPMX19_02928 0.28 +0.2
183,136 - MPMX19_02928 0.28 -3.0
183,136 - MPMX19_02928 0.28 -1.2
183,136 - MPMX19_02928 0.28 -1.1
183,136 - MPMX19_02928 0.28 -0.1
183,136 - MPMX19_02928 0.28 -0.9
183,136 - MPMX19_02928 0.28 -2.9
183,223 - MPMX19_02928 0.38 -1.6

Or see this region's nucleotide sequence