Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02913

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02911 and MPMX19_02912 are separated by 196 nucleotidesMPMX19_02912 and MPMX19_02913 are separated by 155 nucleotidesMPMX19_02913 and MPMX19_02914 are separated by 7 nucleotidesMPMX19_02914 and MPMX19_02915 are separated by 11 nucleotides MPMX19_02911: MPMX19_02911 - hypothetical protein, at 166,913 to 167,386 _02911 MPMX19_02912: MPMX19_02912 - hypothetical protein, at 167,583 to 167,777 _02912 MPMX19_02913: MPMX19_02913 - hypothetical protein, at 167,933 to 168,277 _02913 MPMX19_02914: MPMX19_02914 - hypothetical protein, at 168,285 to 169,109 _02914 MPMX19_02915: MPMX19_02915 - hypothetical protein, at 169,121 to 170,047 _02915 Position (kb) 167 168 169Strain fitness (log2 ratio) -3 -2 -1 0 1at 167.151 kb on + strand, within MPMX19_02911at 167.151 kb on + strand, within MPMX19_02911at 167.152 kb on - strand, within MPMX19_02911at 167.152 kb on - strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.222 kb on + strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.223 kb on - strand, within MPMX19_02911at 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.384 kb on + strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.385 kb on - strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.427 kb on + strandat 167.428 kb on - strandat 167.428 kb on - strandat 167.428 kb on - strandat 167.448 kb on + strandat 167.448 kb on + strandat 167.494 kb on - strandat 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.736 kb on + strand, within MPMX19_02912at 167.737 kb on - strand, within MPMX19_02912at 167.737 kb on - strand, within MPMX19_02912at 167.737 kb on - strand, within MPMX19_02912at 167.869 kb on - strandat 168.012 kb on - strand, within MPMX19_02913at 168.035 kb on + strand, within MPMX19_02913at 168.035 kb on + strand, within MPMX19_02913at 168.036 kb on - strand, within MPMX19_02913at 168.036 kb on - strand, within MPMX19_02913at 168.036 kb on - strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on + strand, within MPMX19_02913at 168.128 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.129 kb on - strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.137 kb on + strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.138 kb on - strand, within MPMX19_02913at 168.286 kb on + strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.287 kb on - strandat 168.494 kb on + strand, within MPMX19_02914at 168.494 kb on + strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.495 kb on - strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.496 kb on + strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.497 kb on - strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.511 kb on + strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.512 kb on - strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.697 kb on + strand, within MPMX19_02914at 168.698 kb on - strand, within MPMX19_02914at 168.698 kb on - strand, within MPMX19_02914at 168.749 kb on + strand, within MPMX19_02914at 168.749 kb on + strand, within MPMX19_02914at 168.750 kb on - strand, within MPMX19_02914at 168.750 kb on - strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.988 kb on + strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 168.989 kb on - strand, within MPMX19_02914at 169.122 kb on + strandat 169.122 kb on + strandat 169.122 kb on + strandat 169.122 kb on + strandat 169.123 kb on - strandat 169.123 kb on - strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.170 kb on + strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strandat 169.171 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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167,151 + MPMX19_02911 0.50 -1.4
167,151 + MPMX19_02911 0.50 +0.5
167,152 - MPMX19_02911 0.50 +0.4
167,152 - MPMX19_02911 0.50 +0.8
167,222 + MPMX19_02911 0.65 -1.4
167,222 + MPMX19_02911 0.65 -1.6
167,222 + MPMX19_02911 0.65 -2.6
167,222 + MPMX19_02911 0.65 -0.8
167,223 - MPMX19_02911 0.65 -0.2
167,223 - MPMX19_02911 0.65 -0.3
167,223 - MPMX19_02911 0.65 -1.5
167,223 - MPMX19_02911 0.65 -1.6
167,384 + +0.0
167,384 + -1.4
167,384 + -0.9
167,384 + -0.1
167,384 + +1.5
167,384 + -0.0
167,384 + +0.2
167,384 + +0.5
167,384 + -0.8
167,384 + -0.5
167,384 + -1.0
167,385 - -0.9
167,385 - +0.7
167,385 - +0.7
167,385 - -1.5
167,385 - +0.6
167,385 - +0.2
167,385 - +0.2
167,385 - +0.3
167,385 - -0.2
167,427 + -0.3
167,427 + -1.5
167,427 + +0.1
167,427 + -1.5
167,428 - +1.2
167,428 - -0.5
167,428 - -0.0
167,448 + -0.4
167,448 + -1.2
167,494 - -0.9
167,736 + MPMX19_02912 0.78 -0.8
167,736 + MPMX19_02912 0.78 -0.4
167,736 + MPMX19_02912 0.78 +0.1
167,736 + MPMX19_02912 0.78 -0.9
167,736 + MPMX19_02912 0.78 -0.1
167,737 - MPMX19_02912 0.79 -1.3
167,737 - MPMX19_02912 0.79 -1.1
167,737 - MPMX19_02912 0.79 -1.3
167,869 - +0.1
168,012 - MPMX19_02913 0.23 -0.8
168,035 + MPMX19_02913 0.30 +0.2
168,035 + MPMX19_02913 0.30 -0.3
168,036 - MPMX19_02913 0.30 -0.9
168,036 - MPMX19_02913 0.30 -0.5
168,036 - MPMX19_02913 0.30 -0.8
168,128 + MPMX19_02913 0.57 -1.8
168,128 + MPMX19_02913 0.57 -0.5
168,128 + MPMX19_02913 0.57 +1.2
168,128 + MPMX19_02913 0.57 -1.3
168,128 + MPMX19_02913 0.57 -1.3
168,128 - MPMX19_02913 0.57 -1.3
168,129 - MPMX19_02913 0.57 -1.1
168,129 - MPMX19_02913 0.57 -2.3
168,129 - MPMX19_02913 0.57 -0.6
168,129 - MPMX19_02913 0.57 -0.5
168,129 - MPMX19_02913 0.57 +0.2
168,129 - MPMX19_02913 0.57 +0.8
168,129 - MPMX19_02913 0.57 +0.9
168,137 + MPMX19_02913 0.59 -0.8
168,137 + MPMX19_02913 0.59 -0.5
168,137 + MPMX19_02913 0.59 -0.8
168,137 + MPMX19_02913 0.59 -0.5
168,137 + MPMX19_02913 0.59 -1.1
168,137 + MPMX19_02913 0.59 -0.9
168,137 + MPMX19_02913 0.59 -1.1
168,138 - MPMX19_02913 0.59 +1.4
168,138 - MPMX19_02913 0.59 +1.2
168,138 - MPMX19_02913 0.59 -1.5
168,286 + -1.9
168,287 - -0.0
168,287 - +1.1
168,287 - -0.3
168,287 - -0.3
168,494 + MPMX19_02914 0.25 -0.7
168,494 + MPMX19_02914 0.25 -0.9
168,495 - MPMX19_02914 0.25 -1.1
168,495 - MPMX19_02914 0.25 -0.1
168,495 - MPMX19_02914 0.25 -1.4
168,495 - MPMX19_02914 0.25 -0.3
168,495 - MPMX19_02914 0.25 -0.9
168,495 - MPMX19_02914 0.25 -0.3
168,495 - MPMX19_02914 0.25 -1.8
168,496 + MPMX19_02914 0.26 -0.1
168,496 + MPMX19_02914 0.26 -0.2
168,496 + MPMX19_02914 0.26 +0.5
168,496 + MPMX19_02914 0.26 -1.1
168,496 + MPMX19_02914 0.26 -1.7
168,496 + MPMX19_02914 0.26 +0.6
168,496 + MPMX19_02914 0.26 -0.4
168,496 + MPMX19_02914 0.26 +0.3
168,496 + MPMX19_02914 0.26 +0.3
168,497 - MPMX19_02914 0.26 +0.7
168,497 - MPMX19_02914 0.26 +1.1
168,497 - MPMX19_02914 0.26 +0.7
168,497 - MPMX19_02914 0.26 -1.9
168,497 - MPMX19_02914 0.26 -0.8
168,497 - MPMX19_02914 0.26 +0.5
168,497 - MPMX19_02914 0.26 -0.8
168,511 + MPMX19_02914 0.27 +0.5
168,511 + MPMX19_02914 0.27 +1.5
168,511 + MPMX19_02914 0.27 +0.2
168,511 + MPMX19_02914 0.27 -1.8
168,511 + MPMX19_02914 0.27 -0.5
168,511 + MPMX19_02914 0.27 +1.2
168,511 + MPMX19_02914 0.27 -0.3
168,511 + MPMX19_02914 0.27 +0.8
168,511 + MPMX19_02914 0.27 +1.3
168,511 + MPMX19_02914 0.27 -0.9
168,511 + MPMX19_02914 0.27 +0.1
168,512 - MPMX19_02914 0.28 +0.5
168,512 - MPMX19_02914 0.28 -0.4
168,512 - MPMX19_02914 0.28 +0.6
168,512 - MPMX19_02914 0.28 -1.1
168,512 - MPMX19_02914 0.28 -2.7
168,512 - MPMX19_02914 0.28 +0.6
168,512 - MPMX19_02914 0.28 -1.1
168,512 - MPMX19_02914 0.28 -1.5
168,512 - MPMX19_02914 0.28 -0.9
168,512 - MPMX19_02914 0.28 -0.9
168,512 - MPMX19_02914 0.28 -0.1
168,512 - MPMX19_02914 0.28 -2.4
168,697 + MPMX19_02914 0.50 -1.1
168,697 + MPMX19_02914 0.50 -0.3
168,697 + MPMX19_02914 0.50 -1.5
168,697 + MPMX19_02914 0.50 -0.8
168,697 + MPMX19_02914 0.50 -1.2
168,697 + MPMX19_02914 0.50 -0.7
168,697 + MPMX19_02914 0.50 -1.1
168,698 - MPMX19_02914 0.50 +1.2
168,698 - MPMX19_02914 0.50 +0.1
168,749 + MPMX19_02914 0.56 -0.4
168,749 + MPMX19_02914 0.56 -1.1
168,750 - MPMX19_02914 0.56 -0.9
168,750 - MPMX19_02914 0.56 -1.5
168,988 + MPMX19_02914 0.85 -1.1
168,988 + MPMX19_02914 0.85 -0.3
168,988 + MPMX19_02914 0.85 -0.5
168,988 + MPMX19_02914 0.85 +0.5
168,988 + MPMX19_02914 0.85 -0.9
168,988 + MPMX19_02914 0.85 -1.0
168,988 + MPMX19_02914 0.85 -1.2
168,988 + MPMX19_02914 0.85 -2.8
168,988 + MPMX19_02914 0.85 +1.4
168,988 + MPMX19_02914 0.85 -1.7
168,988 + MPMX19_02914 0.85 -0.3
168,988 + MPMX19_02914 0.85 -0.1
168,988 + MPMX19_02914 0.85 +0.2
168,988 + MPMX19_02914 0.85 -2.3
168,988 + MPMX19_02914 0.85 +0.8
168,988 + MPMX19_02914 0.85 -1.0
168,988 + MPMX19_02914 0.85 -0.4
168,989 - MPMX19_02914 0.85 -0.8
168,989 - MPMX19_02914 0.85 -0.6
168,989 - MPMX19_02914 0.85 +0.2
168,989 - MPMX19_02914 0.85 +0.3
168,989 - MPMX19_02914 0.85 +1.1
168,989 - MPMX19_02914 0.85 +1.3
168,989 - MPMX19_02914 0.85 -0.5
168,989 - MPMX19_02914 0.85 -0.3
168,989 - MPMX19_02914 0.85 -0.5
168,989 - MPMX19_02914 0.85 -2.1
168,989 - MPMX19_02914 0.85 -1.8
168,989 - MPMX19_02914 0.85 +0.5
168,989 - MPMX19_02914 0.85 +0.2
168,989 - MPMX19_02914 0.85 -0.4
168,989 - MPMX19_02914 0.85 -0.9
168,989 - MPMX19_02914 0.85 -2.4
169,122 + -0.1
169,122 + -0.3
169,122 + -0.4
169,122 + -0.3
169,123 - -0.7
169,123 - -0.8
169,170 + +0.7
169,170 + -1.1
169,170 + -0.4
169,170 + -0.5
169,170 + +0.6
169,170 + -0.1
169,170 + -1.3
169,170 + +0.1
169,170 + -0.8
169,170 + -1.7
169,170 + -2.0
169,170 + +0.1
169,171 - -0.6
169,171 - -0.5
169,171 - +0.7
169,171 - -0.3
169,171 - -0.3
169,171 - +0.1
169,171 - +0.8
169,171 - -0.4
169,171 - -1.0
169,171 - -1.8
169,171 - -1.8
169,171 - -0.5
169,171 - +0.8
169,171 - -0.3
169,171 - -0.6
169,171 - -0.5
169,171 - -0.3
169,171 - -1.9

Or see this region's nucleotide sequence