Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02832

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02831 and MPMX19_02832 overlap by 4 nucleotidesMPMX19_02832 and MPMX19_02833 are separated by 8 nucleotidesMPMX19_02833 and MPMX19_02834 overlap by 4 nucleotides MPMX19_02831: MPMX19_02831 - Acetylpolyamine amidohydrolase, at 73,093 to 74,157 _02831 MPMX19_02832: MPMX19_02832 - putative cystine transporter YijE, at 74,154 to 75,062 _02832 MPMX19_02833: MPMX19_02833 - Polyketide biosynthesis malonyl CoA-acyl carrier protein transacylase PksC, at 75,071 to 75,988 _02833 MPMX19_02834: MPMX19_02834 - 2-(5''-triphosphoribosyl)-3'-dephosphocoenzyme-A synthase, at 75,985 to 76,860 _02834 Position (kb) 74 75 76Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 73.249 kb on + strand, within MPMX19_02831at 73.289 kb on - strand, within MPMX19_02831at 73.289 kb on - strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.540 kb on + strand, within MPMX19_02831at 73.541 kb on - strand, within MPMX19_02831at 73.581 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.600 kb on + strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.601 kb on - strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.726 kb on + strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.727 kb on - strand, within MPMX19_02831at 73.780 kb on + strand, within MPMX19_02831at 73.780 kb on + strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.781 kb on - strand, within MPMX19_02831at 73.798 kb on + strand, within MPMX19_02831at 73.798 kb on + strand, within MPMX19_02831at 73.799 kb on - strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 73.834 kb on + strand, within MPMX19_02831at 74.200 kb on - strandat 74.200 kb on - strandat 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.739 kb on + strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.740 kb on - strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.877 kb on + strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 74.878 kb on - strand, within MPMX19_02832at 75.066 kb on + strandat 75.066 kb on + strandat 75.067 kb on - strandat 75.067 kb on - strandat 75.067 kb on - strandat 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.306 kb on + strand, within MPMX19_02833at 75.307 kb on - strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.499 kb on + strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.500 kb on - strand, within MPMX19_02833at 75.668 kb on + strand, within MPMX19_02833at 75.669 kb on - strand, within MPMX19_02833

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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73,249 + MPMX19_02831 0.15 -0.9
73,289 - MPMX19_02831 0.18 +0.4
73,289 - MPMX19_02831 0.18 -0.4
73,540 + MPMX19_02831 0.42 -0.2
73,540 + MPMX19_02831 0.42 +0.1
73,540 + MPMX19_02831 0.42 +0.1
73,541 - MPMX19_02831 0.42 +0.1
73,581 + MPMX19_02831 0.46 -0.4
73,600 + MPMX19_02831 0.48 +0.2
73,600 + MPMX19_02831 0.48 -1.3
73,600 + MPMX19_02831 0.48 +0.7
73,601 - MPMX19_02831 0.48 -0.3
73,601 - MPMX19_02831 0.48 -0.4
73,601 - MPMX19_02831 0.48 -1.5
73,726 + MPMX19_02831 0.59 +0.1
73,726 + MPMX19_02831 0.59 +0.9
73,726 + MPMX19_02831 0.59 -2.2
73,727 - MPMX19_02831 0.60 -0.3
73,727 - MPMX19_02831 0.60 +0.1
73,727 - MPMX19_02831 0.60 +0.1
73,727 - MPMX19_02831 0.60 -1.0
73,727 - MPMX19_02831 0.60 -0.3
73,727 - MPMX19_02831 0.60 -1.3
73,727 - MPMX19_02831 0.60 -1.1
73,780 + MPMX19_02831 0.65 -0.9
73,780 + MPMX19_02831 0.65 -1.7
73,781 - MPMX19_02831 0.65 -1.4
73,781 - MPMX19_02831 0.65 -0.3
73,781 - MPMX19_02831 0.65 -1.2
73,798 + MPMX19_02831 0.66 -1.0
73,798 + MPMX19_02831 0.66 -0.8
73,799 - MPMX19_02831 0.66 -1.6
73,834 + MPMX19_02831 0.70 +1.1
73,834 + MPMX19_02831 0.70 -0.3
73,834 + MPMX19_02831 0.70 -1.9
74,200 - -0.1
74,200 - -2.2
74,739 + MPMX19_02832 0.64 -0.4
74,739 + MPMX19_02832 0.64 -0.4
74,739 + MPMX19_02832 0.64 -2.1
74,739 + MPMX19_02832 0.64 -0.5
74,739 + MPMX19_02832 0.64 -0.3
74,739 + MPMX19_02832 0.64 -0.5
74,739 + MPMX19_02832 0.64 -0.4
74,739 + MPMX19_02832 0.64 +0.1
74,739 + MPMX19_02832 0.64 -0.5
74,739 + MPMX19_02832 0.64 +0.1
74,739 + MPMX19_02832 0.64 -0.5
74,739 + MPMX19_02832 0.64 +0.5
74,739 + MPMX19_02832 0.64 -0.9
74,739 + MPMX19_02832 0.64 +1.8
74,740 - MPMX19_02832 0.64 -0.8
74,740 - MPMX19_02832 0.64 -0.0
74,740 - MPMX19_02832 0.64 -0.1
74,740 - MPMX19_02832 0.64 +1.1
74,740 - MPMX19_02832 0.64 -1.6
74,740 - MPMX19_02832 0.64 -0.1
74,740 - MPMX19_02832 0.64 -0.6
74,740 - MPMX19_02832 0.64 +1.5
74,740 - MPMX19_02832 0.64 -0.2
74,877 + MPMX19_02832 0.80 -1.2
74,877 + MPMX19_02832 0.80 -1.6
74,877 + MPMX19_02832 0.80 +0.5
74,877 + MPMX19_02832 0.80 +0.6
74,877 + MPMX19_02832 0.80 +0.2
74,877 + MPMX19_02832 0.80 -1.1
74,877 + MPMX19_02832 0.80 -2.1
74,877 + MPMX19_02832 0.80 -0.1
74,878 - MPMX19_02832 0.80 +1.1
74,878 - MPMX19_02832 0.80 -0.5
74,878 - MPMX19_02832 0.80 +0.4
75,066 + -0.5
75,066 + -0.7
75,067 - +0.1
75,067 - -1.9
75,067 - +0.1
75,306 + MPMX19_02833 0.26 +0.5
75,306 + MPMX19_02833 0.26 +0.1
75,306 + MPMX19_02833 0.26 -0.8
75,306 + MPMX19_02833 0.26 +0.9
75,307 - MPMX19_02833 0.26 -0.2
75,499 + MPMX19_02833 0.47 -0.1
75,499 + MPMX19_02833 0.47 +0.1
75,499 + MPMX19_02833 0.47 -0.4
75,499 + MPMX19_02833 0.47 -0.5
75,499 + MPMX19_02833 0.47 +1.5
75,499 + MPMX19_02833 0.47 -2.8
75,499 + MPMX19_02833 0.47 -1.5
75,499 + MPMX19_02833 0.47 +0.5
75,499 + MPMX19_02833 0.47 -0.1
75,499 + MPMX19_02833 0.47 -1.6
75,499 + MPMX19_02833 0.47 -1.9
75,499 + MPMX19_02833 0.47 -1.4
75,500 - MPMX19_02833 0.47 -0.8
75,500 - MPMX19_02833 0.47 -0.3
75,500 - MPMX19_02833 0.47 -0.1
75,500 - MPMX19_02833 0.47 +1.4
75,500 - MPMX19_02833 0.47 -1.3
75,500 - MPMX19_02833 0.47 -0.8
75,500 - MPMX19_02833 0.47 -2.3
75,500 - MPMX19_02833 0.47 +1.3
75,500 - MPMX19_02833 0.47 -0.5
75,668 + MPMX19_02833 0.65 -0.3
75,669 - MPMX19_02833 0.65 +0.2

Or see this region's nucleotide sequence