Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02828

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02826 and MPMX19_02827 overlap by 4 nucleotidesMPMX19_02827 and MPMX19_02828 are separated by 49 nucleotidesMPMX19_02828 and MPMX19_02829 are separated by 0 nucleotides MPMX19_02826: MPMX19_02826 - Dipeptide transport system permease protein DppB, at 67,274 to 68,254 _02826 MPMX19_02827: MPMX19_02827 - Dipeptide transport system permease protein DppC, at 68,251 to 69,093 _02827 MPMX19_02828: MPMX19_02828 - Glutathione import ATP-binding protein GsiA, at 69,143 to 70,789 _02828 MPMX19_02829: MPMX19_02829 - 2-dehydropantoate 2-reductase, at 70,790 to 71,770 _02829 Position (kb) 69 70 71Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.217 kb on - strandat 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.938 kb on + strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 68.939 kb on - strand, within MPMX19_02827at 69.600 kb on - strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.854 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.896 kb on + strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.897 kb on - strand, within MPMX19_02828at 69.899 kb on - strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.929 kb on + strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 69.930 kb on - strand, within MPMX19_02828at 70.262 kb on + strand, within MPMX19_02828at 70.262 kb on + strand, within MPMX19_02828at 70.263 kb on - strand, within MPMX19_02828at 70.703 kb on + strandat 70.703 kb on + strandat 70.703 kb on + strandat 70.703 kb on + strandat 70.704 kb on - strandat 70.704 kb on - strandat 71.085 kb on + strand, within MPMX19_02829at 71.086 kb on - strand, within MPMX19_02829at 71.095 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.314 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.624 kb on + strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.625 kb on - strand, within MPMX19_02829at 71.739 kb on + strandat 71.740 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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68,217 - -0.1
68,938 + MPMX19_02827 0.81 -1.1
68,938 + MPMX19_02827 0.81 +1.5
68,938 + MPMX19_02827 0.81 -0.4
68,938 + MPMX19_02827 0.81 -1.3
68,938 + MPMX19_02827 0.81 -0.5
68,938 + MPMX19_02827 0.81 -0.8
68,938 + MPMX19_02827 0.81 -0.3
68,938 + MPMX19_02827 0.81 -1.1
68,939 - MPMX19_02827 0.82 -1.2
68,939 - MPMX19_02827 0.82 -0.7
68,939 - MPMX19_02827 0.82 -2.7
68,939 - MPMX19_02827 0.82 +1.2
68,939 - MPMX19_02827 0.82 -0.7
68,939 - MPMX19_02827 0.82 +0.8
68,939 - MPMX19_02827 0.82 -0.7
68,939 - MPMX19_02827 0.82 -0.5
68,939 - MPMX19_02827 0.82 -0.5
68,939 - MPMX19_02827 0.82 -1.3
69,600 - MPMX19_02828 0.28 -0.5
69,854 + MPMX19_02828 0.43 +0.2
69,854 + MPMX19_02828 0.43 +1.2
69,854 + MPMX19_02828 0.43 -2.2
69,896 + MPMX19_02828 0.46 +0.3
69,896 + MPMX19_02828 0.46 -0.3
69,896 + MPMX19_02828 0.46 +0.0
69,897 - MPMX19_02828 0.46 +0.7
69,897 - MPMX19_02828 0.46 +0.9
69,897 - MPMX19_02828 0.46 -0.9
69,897 - MPMX19_02828 0.46 -2.3
69,897 - MPMX19_02828 0.46 -1.0
69,899 - MPMX19_02828 0.46 -0.4
69,929 + MPMX19_02828 0.48 -0.5
69,929 + MPMX19_02828 0.48 +0.1
69,929 + MPMX19_02828 0.48 -0.3
69,930 - MPMX19_02828 0.48 +0.6
69,930 - MPMX19_02828 0.48 -0.2
69,930 - MPMX19_02828 0.48 +1.3
69,930 - MPMX19_02828 0.48 +2.4
70,262 + MPMX19_02828 0.68 -1.4
70,262 + MPMX19_02828 0.68 -0.4
70,263 - MPMX19_02828 0.68 -0.8
70,703 + +0.1
70,703 + -0.2
70,703 + -0.5
70,703 + -1.1
70,704 - -1.2
70,704 - -0.9
71,085 + MPMX19_02829 0.30 -1.7
71,086 - MPMX19_02829 0.30 -0.1
71,095 + MPMX19_02829 0.31 -1.0
71,314 + MPMX19_02829 0.53 -1.2
71,314 + MPMX19_02829 0.53 -0.9
71,314 + MPMX19_02829 0.53 -0.3
71,314 + MPMX19_02829 0.53 -0.8
71,624 + MPMX19_02829 0.85 -0.3
71,624 + MPMX19_02829 0.85 +0.2
71,624 + MPMX19_02829 0.85 +0.1
71,624 + MPMX19_02829 0.85 -0.5
71,624 + MPMX19_02829 0.85 -0.8
71,624 + MPMX19_02829 0.85 -0.3
71,624 + MPMX19_02829 0.85 -2.9
71,625 - MPMX19_02829 0.85 +0.5
71,625 - MPMX19_02829 0.85 -0.3
71,625 - MPMX19_02829 0.85 -1.1
71,625 - MPMX19_02829 0.85 -0.9
71,625 - MPMX19_02829 0.85 -1.4
71,625 - MPMX19_02829 0.85 +0.5
71,625 - MPMX19_02829 0.85 +0.1
71,625 - MPMX19_02829 0.85 -1.3
71,739 + -0.3
71,740 - +0.5

Or see this region's nucleotide sequence