Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02819 and MPMX19_02820 are separated by 138 nucleotides MPMX19_02820 and MPMX19_02821 are separated by 5 nucleotides
MPMX19_02819: MPMX19_02819 - hypothetical protein, at 55,983 to 56,843
_02819
MPMX19_02820: MPMX19_02820 - HTH-type transcriptional regulator NorG, at 56,982 to 58,394
_02820
MPMX19_02821: MPMX19_02821 - Sensor histidine kinase RcsC, at 58,400 to 61,618
_02821
Position (kb) 56
57
58
59 Strain fitness (log2 ratio) -2
-1
0
1
2 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.197 kb on + strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.198 kb on - strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.353 kb on + strand, within MPMX19_02819 at 56.922 kb on + strand at 56.923 kb on - strand at 56.959 kb on - strand at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.132 kb on + strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.133 kb on - strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.186 kb on + strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.187 kb on - strand, within MPMX19_02820 at 57.406 kb on - strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.585 kb on + strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.586 kb on - strand, within MPMX19_02820 at 57.642 kb on + strand, within MPMX19_02820 at 57.643 kb on - strand, within MPMX19_02820 at 57.643 kb on - strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.644 kb on + strand, within MPMX19_02820 at 57.645 kb on - strand, within MPMX19_02820 at 57.645 kb on - strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.708 kb on + strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.709 kb on - strand, within MPMX19_02820 at 57.954 kb on + strand, within MPMX19_02820 at 57.954 kb on + strand, within MPMX19_02820 at 57.954 kb on + strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 57.955 kb on - strand, within MPMX19_02820 at 58.074 kb on + strand, within MPMX19_02820 at 58.075 kb on - strand, within MPMX19_02820 at 58.075 kb on - strand, within MPMX19_02820 at 58.075 kb on - strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.188 kb on + strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.189 kb on - strand, within MPMX19_02820 at 58.312 kb on + strand at 58.312 kb on + strand at 58.313 kb on - strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.350 kb on + strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.351 kb on - strand at 58.392 kb on + strand at 58.392 kb on + strand at 58.392 kb on + strand at 58.819 kb on + strand, within MPMX19_02821 at 58.819 kb on + strand, within MPMX19_02821 at 58.820 kb on - strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.914 kb on + strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 58.915 kb on - strand, within MPMX19_02821 at 59.091 kb on - strand, within MPMX19_02821 at 59.091 kb on - strand, within MPMX19_02821
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 56,197 + MPMX19_02819 0.25 -1.9 56,197 + MPMX19_02819 0.25 -1.5 56,197 + MPMX19_02819 0.25 -0.7 56,197 + MPMX19_02819 0.25 -0.4 56,197 + MPMX19_02819 0.25 -1.8 56,198 - MPMX19_02819 0.25 -0.8 56,198 - MPMX19_02819 0.25 -0.6 56,198 - MPMX19_02819 0.25 +0.5 56,198 - MPMX19_02819 0.25 -1.6 56,198 - MPMX19_02819 0.25 -2.5 56,198 - MPMX19_02819 0.25 +0.6 56,198 - MPMX19_02819 0.25 +0.4 56,198 - MPMX19_02819 0.25 -1.1 56,198 - MPMX19_02819 0.25 -0.9 56,353 + MPMX19_02819 0.43 +1.1 56,353 + MPMX19_02819 0.43 -1.3 56,353 + MPMX19_02819 0.43 -0.0 56,353 + MPMX19_02819 0.43 -1.5 56,353 + MPMX19_02819 0.43 -1.3 56,922 + -0.8 56,923 - -1.2 56,959 - -0.9 57,132 + MPMX19_02820 0.11 -0.1 57,132 + MPMX19_02820 0.11 -0.8 57,132 + MPMX19_02820 0.11 +0.6 57,132 + MPMX19_02820 0.11 +1.1 57,132 + MPMX19_02820 0.11 -0.6 57,132 + MPMX19_02820 0.11 -1.0 57,133 - MPMX19_02820 0.11 -1.1 57,133 - MPMX19_02820 0.11 +0.2 57,133 - MPMX19_02820 0.11 +0.6 57,133 - MPMX19_02820 0.11 -0.5 57,133 - MPMX19_02820 0.11 -2.0 57,133 - MPMX19_02820 0.11 +0.4 57,186 + MPMX19_02820 0.14 +1.1 57,186 + MPMX19_02820 0.14 -2.1 57,186 + MPMX19_02820 0.14 -1.5 57,186 + MPMX19_02820 0.14 +0.9 57,186 + MPMX19_02820 0.14 -0.3 57,186 + MPMX19_02820 0.14 +0.7 57,186 + MPMX19_02820 0.14 -1.1 57,186 + MPMX19_02820 0.14 +0.5 57,186 + MPMX19_02820 0.14 -2.3 57,186 + MPMX19_02820 0.14 -0.5 57,186 + MPMX19_02820 0.14 -0.5 57,187 - MPMX19_02820 0.15 -0.9 57,187 - MPMX19_02820 0.15 -1.3 57,187 - MPMX19_02820 0.15 -1.6 57,187 - MPMX19_02820 0.15 +0.2 57,187 - MPMX19_02820 0.15 -0.1 57,187 - MPMX19_02820 0.15 +0.1 57,187 - MPMX19_02820 0.15 +0.7 57,187 - MPMX19_02820 0.15 +0.2 57,187 - MPMX19_02820 0.15 -0.1 57,187 - MPMX19_02820 0.15 +1.1 57,187 - MPMX19_02820 0.15 -1.3 57,406 - MPMX19_02820 0.30 -1.1 57,585 + MPMX19_02820 0.43 +0.2 57,585 + MPMX19_02820 0.43 -0.5 57,585 + MPMX19_02820 0.43 +0.7 57,585 + MPMX19_02820 0.43 -0.8 57,585 + MPMX19_02820 0.43 -0.5 57,586 - MPMX19_02820 0.43 -0.5 57,586 - MPMX19_02820 0.43 +0.1 57,586 - MPMX19_02820 0.43 -0.2 57,586 - MPMX19_02820 0.43 +0.2 57,586 - MPMX19_02820 0.43 -1.0 57,586 - MPMX19_02820 0.43 -0.0 57,642 + MPMX19_02820 0.47 -0.1 57,643 - MPMX19_02820 0.47 -0.5 57,643 - MPMX19_02820 0.47 -1.3 57,644 + MPMX19_02820 0.47 -0.1 57,644 + MPMX19_02820 0.47 -1.2 57,644 + MPMX19_02820 0.47 -0.7 57,644 + MPMX19_02820 0.47 -1.3 57,645 - MPMX19_02820 0.47 -1.1 57,645 - MPMX19_02820 0.47 -0.3 57,708 + MPMX19_02820 0.51 -0.5 57,708 + MPMX19_02820 0.51 -0.3 57,708 + MPMX19_02820 0.51 -0.4 57,708 + MPMX19_02820 0.51 -0.4 57,708 + MPMX19_02820 0.51 +1.1 57,708 + MPMX19_02820 0.51 +1.1 57,708 + MPMX19_02820 0.51 +0.1 57,708 + MPMX19_02820 0.51 -0.3 57,709 - MPMX19_02820 0.51 -0.8 57,709 - MPMX19_02820 0.51 +1.4 57,709 - MPMX19_02820 0.51 -0.1 57,709 - MPMX19_02820 0.51 +1.1 57,954 + MPMX19_02820 0.69 -0.3 57,954 + MPMX19_02820 0.69 -0.4 57,954 + MPMX19_02820 0.69 +0.5 57,955 - MPMX19_02820 0.69 -1.3 57,955 - MPMX19_02820 0.69 +0.1 57,955 - MPMX19_02820 0.69 -1.1 57,955 - MPMX19_02820 0.69 +0.5 57,955 - MPMX19_02820 0.69 -1.3 57,955 - MPMX19_02820 0.69 +1.1 57,955 - MPMX19_02820 0.69 -0.6 57,955 - MPMX19_02820 0.69 -0.5 58,074 + MPMX19_02820 0.77 +0.1 58,075 - MPMX19_02820 0.77 -1.1 58,075 - MPMX19_02820 0.77 -0.8 58,075 - MPMX19_02820 0.77 -0.5 58,188 + MPMX19_02820 0.85 -0.8 58,188 + MPMX19_02820 0.85 +2.1 58,188 + MPMX19_02820 0.85 +0.2 58,188 + MPMX19_02820 0.85 +0.6 58,188 + MPMX19_02820 0.85 -0.3 58,188 + MPMX19_02820 0.85 -0.2 58,188 + MPMX19_02820 0.85 -0.9 58,188 + MPMX19_02820 0.85 +0.1 58,188 + MPMX19_02820 0.85 -0.4 58,189 - MPMX19_02820 0.85 -0.3 58,189 - MPMX19_02820 0.85 -1.8 58,189 - MPMX19_02820 0.85 -1.9 58,189 - MPMX19_02820 0.85 -1.4 58,189 - MPMX19_02820 0.85 -0.6 58,189 - MPMX19_02820 0.85 -0.3 58,189 - MPMX19_02820 0.85 -1.5 58,189 - MPMX19_02820 0.85 +0.1 58,189 - MPMX19_02820 0.85 +0.5 58,312 + +0.3 58,312 + -0.4 58,313 - -0.1 58,350 + -0.5 58,350 + +1.1 58,350 + -0.2 58,350 + -0.2 58,350 + +0.6 58,350 + -0.3 58,350 + +1.1 58,350 + +1.1 58,350 + +0.6 58,350 + -0.4 58,350 + -1.1 58,350 + -1.9 58,351 - -1.6 58,351 - +0.1 58,351 - +0.2 58,351 - -1.0 58,351 - +0.1 58,351 - -0.4 58,351 - -1.1 58,351 - +0.1 58,351 - +0.7 58,392 + -1.1 58,392 + -0.5 58,392 + +0.6 58,819 + MPMX19_02821 0.13 -2.1 58,819 + MPMX19_02821 0.13 +0.4 58,820 - MPMX19_02821 0.13 -0.7 58,914 + MPMX19_02821 0.16 -0.3 58,914 + MPMX19_02821 0.16 -0.5 58,914 + MPMX19_02821 0.16 +0.2 58,914 + MPMX19_02821 0.16 +0.5 58,914 + MPMX19_02821 0.16 -0.2 58,915 - MPMX19_02821 0.16 -0.6 58,915 - MPMX19_02821 0.16 +0.6 58,915 - MPMX19_02821 0.16 -0.3 58,915 - MPMX19_02821 0.16 +2.5 58,915 - MPMX19_02821 0.16 -1.1 58,915 - MPMX19_02821 0.16 +0.6 59,091 - MPMX19_02821 0.21 +0.1 59,091 - MPMX19_02821 0.21 +1.1
Or see this region's nucleotide sequence