Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02815 and MPMX19_02816 are separated by 14 nucleotides MPMX19_02816 and MPMX19_02817 are separated by 83 nucleotides MPMX19_02817 and MPMX19_02818 are separated by 141 nucleotides
MPMX19_02815: MPMX19_02815 - 2-keto-4-pentenoate hydratase, at 52,028 to 52,792
_02815
MPMX19_02816: MPMX19_02816 - 3-oxoacyl-[acyl-carrier-protein] reductase FabG, at 52,807 to 53,493
_02816
MPMX19_02817: MPMX19_02817 - Serine 3-dehydrogenase, at 53,577 to 54,365
_02817
MPMX19_02818: MPMX19_02818 - hypothetical protein, at 54,507 to 55,979
_02818
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 53.218 kb on + strand, within MPMX19_02816 at 53.218 kb on + strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.219 kb on - strand, within MPMX19_02816 at 53.491 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.534 kb on + strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.535 kb on - strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.536 kb on + strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 53.537 kb on - strand at 54.052 kb on - strand, within MPMX19_02817 at 54.052 kb on - strand, within MPMX19_02817 at 54.211 kb on - strand, within MPMX19_02817 at 54.211 kb on - strand, within MPMX19_02817 at 54.437 kb on + strand at 54.438 kb on - strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.524 kb on + strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.525 kb on - strand at 54.638 kb on + strand at 54.638 kb on + strand at 54.639 kb on - strand at 54.639 kb on - strand at 54.639 kb on - strand at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818 at 55.317 kb on + strand, within MPMX19_02818
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 53,218 + MPMX19_02816 0.60 -0.1 53,218 + MPMX19_02816 0.60 +0.4 53,219 - MPMX19_02816 0.60 -0.9 53,219 - MPMX19_02816 0.60 -1.1 53,219 - MPMX19_02816 0.60 -0.1 53,219 - MPMX19_02816 0.60 -0.2 53,491 + +0.5 53,534 + -0.6 53,534 + -0.2 53,534 + -1.0 53,534 + -1.0 53,534 + -1.0 53,534 + -1.3 53,535 - -0.8 53,535 - -1.9 53,535 - -0.5 53,535 - +0.2 53,535 - +0.3 53,535 - -0.8 53,535 - -0.4 53,536 + -0.9 53,536 + +0.6 53,536 + -0.3 53,536 + -0.9 53,536 + +1.1 53,536 + -0.9 53,537 - -0.5 53,537 - -0.9 53,537 - -0.5 53,537 - -0.5 53,537 - -1.6 53,537 - +1.1 53,537 - -1.6 54,052 - MPMX19_02817 0.60 -0.8 54,052 - MPMX19_02817 0.60 -0.6 54,211 - MPMX19_02817 0.80 -0.5 54,211 - MPMX19_02817 0.80 -2.1 54,437 + -0.1 54,438 - -0.9 54,524 + +0.1 54,524 + -0.5 54,524 + -0.6 54,524 + -0.3 54,524 + -0.4 54,524 + -2.5 54,524 + +2.1 54,524 + +0.8 54,524 + -0.0 54,524 + +0.5 54,524 + -0.7 54,524 + -0.6 54,525 - -0.4 54,525 - -0.9 54,525 - -0.3 54,525 - +0.9 54,525 - -2.2 54,525 - +0.3 54,525 - +0.2 54,525 - -1.1 54,525 - -0.3 54,525 - -1.3 54,525 - -0.6 54,525 - -0.3 54,638 + -0.5 54,638 + +0.7 54,639 - -1.4 54,639 - +1.7 54,639 - +0.8 55,317 + MPMX19_02818 0.55 +0.1 55,317 + MPMX19_02818 0.55 -0.1 55,317 + MPMX19_02818 0.55 -1.5
Or see this region's nucleotide sequence