Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02812

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02811 and MPMX19_02812 are separated by 45 nucleotidesMPMX19_02812 and MPMX19_02813 are separated by 101 nucleotides MPMX19_02811: MPMX19_02811 - Long-chain-alcohol dehydrogenase 1, at 47,091 to 48,227 _02811 MPMX19_02812: MPMX19_02812 - 4-hydroxy-tetrahydrodipicolinate synthase, at 48,273 to 49,172 _02812 MPMX19_02813: MPMX19_02813 - hypothetical protein, at 49,274 to 50,689 _02813 Position (kb) 48 49 50Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 47.694 kb on + strand, within MPMX19_02811at 47.694 kb on + strand, within MPMX19_02811at 47.695 kb on - strand, within MPMX19_02811at 47.695 kb on - strand, within MPMX19_02811at 47.730 kb on + strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.731 kb on - strand, within MPMX19_02811at 47.833 kb on - strand, within MPMX19_02811at 48.210 kb on + strandat 48.210 kb on + strandat 48.210 kb on + strandat 48.211 kb on - strandat 48.211 kb on - strandat 48.211 kb on - strandat 48.211 kb on - strandat 48.643 kb on - strand, within MPMX19_02812at 48.678 kb on + strand, within MPMX19_02812at 48.679 kb on - strand, within MPMX19_02812at 48.679 kb on - strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.684 kb on + strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 48.685 kb on - strand, within MPMX19_02812at 49.023 kb on + strand, within MPMX19_02812at 49.023 kb on + strand, within MPMX19_02812at 49.023 kb on + strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.024 kb on - strand, within MPMX19_02812at 49.155 kb on + strandat 49.155 kb on + strandat 49.156 kb on - strandat 49.156 kb on - strandat 49.328 kb on + strandat 49.328 kb on + strandat 49.328 kb on + strandat 49.328 kb on + strandat 49.328 kb on + strandat 49.328 kb on + strandat 49.328 kb on + strandat 49.328 kb on + strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.329 kb on - strandat 49.574 kb on + strand, within MPMX19_02813at 49.574 kb on + strand, within MPMX19_02813at 49.574 kb on + strand, within MPMX19_02813at 49.574 kb on + strand, within MPMX19_02813at 49.575 kb on - strand, within MPMX19_02813at 49.575 kb on - strand, within MPMX19_02813at 49.575 kb on - strand, within MPMX19_02813at 49.589 kb on + strand, within MPMX19_02813at 49.589 kb on + strand, within MPMX19_02813at 49.589 kb on + strand, within MPMX19_02813at 49.590 kb on - strand, within MPMX19_02813at 49.616 kb on + strand, within MPMX19_02813at 49.616 kb on + strand, within MPMX19_02813at 49.620 kb on - strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.661 kb on + strand, within MPMX19_02813at 49.662 kb on - strand, within MPMX19_02813at 49.662 kb on - strand, within MPMX19_02813at 49.662 kb on - strand, within MPMX19_02813at 49.662 kb on - strand, within MPMX19_02813at 49.662 kb on - strand, within MPMX19_02813at 49.662 kb on - strand, within MPMX19_02813at 49.662 kb on - strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.691 kb on + strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.692 kb on - strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.778 kb on + strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.779 kb on - strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.781 kb on + strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.782 kb on - strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.811 kb on + strand, within MPMX19_02813at 49.812 kb on - strand, within MPMX19_02813at 49.812 kb on - strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.925 kb on + strand, within MPMX19_02813at 49.926 kb on - strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.069 kb on + strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.070 kb on - strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.132 kb on + strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.133 kb on - strand, within MPMX19_02813at 50.159 kb on + strand, within MPMX19_02813

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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47,694 + MPMX19_02811 0.53 -0.5
47,694 + MPMX19_02811 0.53 -0.1
47,695 - MPMX19_02811 0.53 -1.0
47,695 - MPMX19_02811 0.53 -0.3
47,730 + MPMX19_02811 0.56 -1.2
47,731 - MPMX19_02811 0.56 -1.3
47,731 - MPMX19_02811 0.56 -1.8
47,731 - MPMX19_02811 0.56 -1.3
47,731 - MPMX19_02811 0.56 -0.3
47,833 - MPMX19_02811 0.65 -1.3
48,210 + +0.6
48,210 + -0.1
48,210 + -0.5
48,211 - -1.2
48,211 - -1.0
48,211 - -1.3
48,211 - -0.5
48,643 - MPMX19_02812 0.41 -2.3
48,678 + MPMX19_02812 0.45 -0.8
48,679 - MPMX19_02812 0.45 +0.6
48,679 - MPMX19_02812 0.45 -1.8
48,684 + MPMX19_02812 0.46 -1.0
48,684 + MPMX19_02812 0.46 -0.9
48,684 + MPMX19_02812 0.46 +1.5
48,684 + MPMX19_02812 0.46 -0.7
48,684 + MPMX19_02812 0.46 -0.1
48,684 + MPMX19_02812 0.46 -0.4
48,684 + MPMX19_02812 0.46 +0.1
48,684 + MPMX19_02812 0.46 -1.5
48,684 + MPMX19_02812 0.46 +0.1
48,685 - MPMX19_02812 0.46 -0.1
48,685 - MPMX19_02812 0.46 +0.7
48,685 - MPMX19_02812 0.46 -0.9
48,685 - MPMX19_02812 0.46 -1.3
48,685 - MPMX19_02812 0.46 -0.1
48,685 - MPMX19_02812 0.46 +0.2
48,685 - MPMX19_02812 0.46 +0.5
49,023 + MPMX19_02812 0.83 -2.2
49,023 + MPMX19_02812 0.83 -0.8
49,023 + MPMX19_02812 0.83 -0.8
49,024 - MPMX19_02812 0.83 +0.9
49,024 - MPMX19_02812 0.83 -0.8
49,024 - MPMX19_02812 0.83 -0.8
49,024 - MPMX19_02812 0.83 -0.3
49,155 + -0.4
49,155 + -0.2
49,156 - -0.6
49,156 - +0.1
49,328 + -0.8
49,328 + -1.0
49,328 + +0.1
49,328 + -1.9
49,328 + +1.1
49,328 + -1.3
49,328 + +0.6
49,328 + -1.8
49,329 - -0.5
49,329 - -0.5
49,329 - +0.4
49,329 - -0.3
49,329 - +1.6
49,329 - +0.1
49,329 - -1.9
49,329 - -0.5
49,329 - -0.7
49,574 + MPMX19_02813 0.21 -0.1
49,574 + MPMX19_02813 0.21 +1.1
49,574 + MPMX19_02813 0.21 -0.3
49,574 + MPMX19_02813 0.21 -0.2
49,575 - MPMX19_02813 0.21 -1.3
49,575 - MPMX19_02813 0.21 -1.7
49,575 - MPMX19_02813 0.21 -1.3
49,589 + MPMX19_02813 0.22 +0.2
49,589 + MPMX19_02813 0.22 -0.4
49,589 + MPMX19_02813 0.22 -0.5
49,590 - MPMX19_02813 0.22 -0.3
49,616 + MPMX19_02813 0.24 -0.5
49,616 + MPMX19_02813 0.24 -0.3
49,620 - MPMX19_02813 0.24 -1.2
49,661 + MPMX19_02813 0.27 +0.7
49,661 + MPMX19_02813 0.27 -1.4
49,661 + MPMX19_02813 0.27 -0.3
49,661 + MPMX19_02813 0.27 +0.2
49,661 + MPMX19_02813 0.27 +0.1
49,661 + MPMX19_02813 0.27 -1.6
49,661 + MPMX19_02813 0.27 +1.1
49,661 + MPMX19_02813 0.27 -1.3
49,661 + MPMX19_02813 0.27 -0.6
49,662 - MPMX19_02813 0.27 -0.9
49,662 - MPMX19_02813 0.27 -1.4
49,662 - MPMX19_02813 0.27 -0.0
49,662 - MPMX19_02813 0.27 -0.4
49,662 - MPMX19_02813 0.27 -0.9
49,662 - MPMX19_02813 0.27 -1.2
49,662 - MPMX19_02813 0.27 +0.9
49,691 + MPMX19_02813 0.29 -1.3
49,691 + MPMX19_02813 0.29 -0.4
49,691 + MPMX19_02813 0.29 -1.8
49,691 + MPMX19_02813 0.29 +0.5
49,691 + MPMX19_02813 0.29 +0.9
49,691 + MPMX19_02813 0.29 -1.6
49,691 + MPMX19_02813 0.29 -0.8
49,692 - MPMX19_02813 0.30 -0.1
49,692 - MPMX19_02813 0.30 -0.4
49,692 - MPMX19_02813 0.30 -1.5
49,692 - MPMX19_02813 0.30 -0.9
49,692 - MPMX19_02813 0.30 -2.3
49,692 - MPMX19_02813 0.30 -0.5
49,692 - MPMX19_02813 0.30 +0.1
49,692 - MPMX19_02813 0.30 -0.8
49,692 - MPMX19_02813 0.30 +1.1
49,692 - MPMX19_02813 0.30 +0.6
49,778 + MPMX19_02813 0.36 -1.1
49,778 + MPMX19_02813 0.36 -0.9
49,778 + MPMX19_02813 0.36 -0.0
49,778 + MPMX19_02813 0.36 +1.5
49,778 + MPMX19_02813 0.36 -0.1
49,778 + MPMX19_02813 0.36 -0.9
49,778 + MPMX19_02813 0.36 -0.3
49,778 + MPMX19_02813 0.36 +0.7
49,778 + MPMX19_02813 0.36 -1.0
49,778 + MPMX19_02813 0.36 -0.8
49,778 + MPMX19_02813 0.36 +0.6
49,779 - MPMX19_02813 0.36 -2.3
49,779 - MPMX19_02813 0.36 -1.9
49,779 - MPMX19_02813 0.36 +0.1
49,779 - MPMX19_02813 0.36 +0.1
49,779 - MPMX19_02813 0.36 -0.1
49,779 - MPMX19_02813 0.36 -0.7
49,779 - MPMX19_02813 0.36 -0.6
49,779 - MPMX19_02813 0.36 -0.5
49,781 + MPMX19_02813 0.36 -1.3
49,781 + MPMX19_02813 0.36 -0.5
49,781 + MPMX19_02813 0.36 -0.5
49,781 + MPMX19_02813 0.36 -0.6
49,781 + MPMX19_02813 0.36 -0.8
49,781 + MPMX19_02813 0.36 -1.5
49,781 + MPMX19_02813 0.36 +0.1
49,781 + MPMX19_02813 0.36 -0.9
49,781 + MPMX19_02813 0.36 -1.5
49,781 + MPMX19_02813 0.36 -0.9
49,781 + MPMX19_02813 0.36 -0.2
49,781 + MPMX19_02813 0.36 +0.5
49,782 - MPMX19_02813 0.36 +0.1
49,782 - MPMX19_02813 0.36 -1.0
49,782 - MPMX19_02813 0.36 -0.9
49,782 - MPMX19_02813 0.36 +0.2
49,782 - MPMX19_02813 0.36 -0.5
49,782 - MPMX19_02813 0.36 -0.4
49,782 - MPMX19_02813 0.36 -0.0
49,782 - MPMX19_02813 0.36 -1.6
49,782 - MPMX19_02813 0.36 +0.1
49,782 - MPMX19_02813 0.36 -0.6
49,811 + MPMX19_02813 0.38 -0.8
49,811 + MPMX19_02813 0.38 -0.3
49,811 + MPMX19_02813 0.38 -0.5
49,811 + MPMX19_02813 0.38 +0.6
49,811 + MPMX19_02813 0.38 +1.8
49,812 - MPMX19_02813 0.38 +1.1
49,812 - MPMX19_02813 0.38 -1.2
49,925 + MPMX19_02813 0.46 -0.5
49,925 + MPMX19_02813 0.46 -1.5
49,925 + MPMX19_02813 0.46 -0.5
49,925 + MPMX19_02813 0.46 -0.3
49,925 + MPMX19_02813 0.46 -0.3
49,926 - MPMX19_02813 0.46 +0.7
50,069 + MPMX19_02813 0.56 -0.7
50,069 + MPMX19_02813 0.56 -1.2
50,069 + MPMX19_02813 0.56 -1.4
50,069 + MPMX19_02813 0.56 +1.5
50,069 + MPMX19_02813 0.56 -0.4
50,069 + MPMX19_02813 0.56 +1.5
50,069 + MPMX19_02813 0.56 -0.9
50,069 + MPMX19_02813 0.56 -1.0
50,069 + MPMX19_02813 0.56 +0.2
50,069 + MPMX19_02813 0.56 -2.3
50,070 - MPMX19_02813 0.56 +1.5
50,070 - MPMX19_02813 0.56 -3.0
50,070 - MPMX19_02813 0.56 +0.5
50,070 - MPMX19_02813 0.56 -1.4
50,070 - MPMX19_02813 0.56 +0.9
50,132 + MPMX19_02813 0.61 +0.5
50,132 + MPMX19_02813 0.61 -1.5
50,132 + MPMX19_02813 0.61 +0.1
50,132 + MPMX19_02813 0.61 -0.0
50,132 + MPMX19_02813 0.61 -0.7
50,133 - MPMX19_02813 0.61 -1.1
50,133 - MPMX19_02813 0.61 -0.3
50,133 - MPMX19_02813 0.61 +1.5
50,133 - MPMX19_02813 0.61 -1.4
50,133 - MPMX19_02813 0.61 -0.9
50,133 - MPMX19_02813 0.61 -1.9
50,159 + MPMX19_02813 0.62 -0.8

Or see this region's nucleotide sequence