Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02804

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02803 and MPMX19_02804 are separated by 16 nucleotidesMPMX19_02804 and MPMX19_02805 are separated by 191 nucleotides MPMX19_02803: MPMX19_02803 - putative FAD-linked oxidoreductase, at 37,347 to 38,789 _02803 MPMX19_02804: MPMX19_02804 - 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial, at 38,806 to 39,612 _02804 MPMX19_02805: MPMX19_02805 - putative transporter, at 39,804 to 41,057 _02805 Position (kb) 38 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 37.920 kb on + strand, within MPMX19_02803at 37.920 kb on + strand, within MPMX19_02803at 38.190 kb on + strand, within MPMX19_02803at 38.191 kb on - strand, within MPMX19_02803at 38.191 kb on - strand, within MPMX19_02803at 38.191 kb on - strand, within MPMX19_02803at 38.492 kb on + strand, within MPMX19_02803at 38.493 kb on - strand, within MPMX19_02803at 38.848 kb on + strandat 39.080 kb on + strand, within MPMX19_02804at 39.081 kb on - strand, within MPMX19_02804at 39.081 kb on - strand, within MPMX19_02804at 39.343 kb on + strand, within MPMX19_02804at 39.343 kb on + strand, within MPMX19_02804at 39.344 kb on - strand, within MPMX19_02804at 39.344 kb on - strand, within MPMX19_02804at 39.530 kb on + strand, within MPMX19_02804at 39.531 kb on - strand, within MPMX19_02804at 39.531 kb on - strand, within MPMX19_02804at 39.557 kb on + strandat 39.557 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.566 kb on + strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.567 kb on - strandat 39.649 kb on + strandat 39.649 kb on + strandat 39.650 kb on - strandat 39.650 kb on - strandat 39.997 kb on + strand, within MPMX19_02805at 39.997 kb on + strand, within MPMX19_02805at 39.998 kb on - strand, within MPMX19_02805at 39.998 kb on - strand, within MPMX19_02805at 40.406 kb on - strand, within MPMX19_02805at 40.406 kb on - strand, within MPMX19_02805

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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37,920 + MPMX19_02803 0.40 -2.9
37,920 + MPMX19_02803 0.40 -0.6
38,190 + MPMX19_02803 0.58 -0.1
38,191 - MPMX19_02803 0.58 -1.1
38,191 - MPMX19_02803 0.58 -0.4
38,191 - MPMX19_02803 0.58 -0.0
38,492 + MPMX19_02803 0.79 -1.1
38,493 - MPMX19_02803 0.79 +0.1
38,848 + +0.1
39,080 + MPMX19_02804 0.34 -0.9
39,081 - MPMX19_02804 0.34 -0.8
39,081 - MPMX19_02804 0.34 +1.3
39,343 + MPMX19_02804 0.67 -1.3
39,343 + MPMX19_02804 0.67 -0.3
39,344 - MPMX19_02804 0.67 +1.8
39,344 - MPMX19_02804 0.67 +0.7
39,530 + MPMX19_02804 0.90 -0.3
39,531 - MPMX19_02804 0.90 -1.5
39,531 - MPMX19_02804 0.90 -0.3
39,557 + -1.6
39,557 + +0.8
39,566 + -3.2
39,566 + -1.4
39,566 + -1.9
39,566 + -0.0
39,566 + -2.5
39,566 + -2.3
39,566 + -2.2
39,566 + -0.5
39,566 + -0.4
39,566 + -0.3
39,566 + -1.4
39,566 + -0.0
39,566 + -1.8
39,566 + -0.5
39,566 + -1.2
39,566 + -0.5
39,566 + +0.9
39,566 + -0.2
39,567 - +1.6
39,567 - -0.9
39,567 - -1.3
39,567 - +0.3
39,567 - +0.2
39,567 - -0.8
39,567 - -0.4
39,567 - -0.5
39,567 - -0.8
39,567 - -0.1
39,567 - -0.4
39,649 + +1.1
39,649 + +0.6
39,650 - -0.1
39,650 - +0.5
39,997 + MPMX19_02805 0.15 -0.5
39,997 + MPMX19_02805 0.15 -0.5
39,998 - MPMX19_02805 0.15 -0.7
39,998 - MPMX19_02805 0.15 -0.7
40,406 - MPMX19_02805 0.48 +1.3
40,406 - MPMX19_02805 0.48 +0.1

Or see this region's nucleotide sequence