Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02800 and MPMX19_02801 overlap by 4 nucleotides MPMX19_02801 and MPMX19_02802 overlap by 8 nucleotides MPMX19_02802 and MPMX19_02803 are separated by 5 nucleotides
MPMX19_02800: MPMX19_02800 - hypothetical protein, at 34,837 to 35,853
_02800
MPMX19_02801: MPMX19_02801 - Lipopolysaccharide export system ATP-binding protein LptB, at 35,850 to 36,641
_02801
MPMX19_02802: MPMX19_02802 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 36,634 to 37,341
_02802
MPMX19_02803: MPMX19_02803 - putative FAD-linked oxidoreductase, at 37,347 to 38,789
_02803
Position (kb) 36
37
38 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 35.653 kb on + strand, within MPMX19_02800 at 35.653 kb on + strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.654 kb on - strand, within MPMX19_02800 at 35.655 kb on + strand, within MPMX19_02800 at 35.656 kb on - strand, within MPMX19_02800 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.331 kb on - strand, within MPMX19_02801 at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.612 kb on + strand at 36.613 kb on - strand at 36.613 kb on - strand at 36.613 kb on - strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.639 kb on + strand at 36.640 kb on - strand at 36.640 kb on - strand at 36.831 kb on + strand, within MPMX19_02802 at 36.832 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 36.989 kb on - strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.249 kb on + strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.250 kb on - strand, within MPMX19_02802 at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.327 kb on + strand at 37.328 kb on - strand at 37.328 kb on - strand at 37.328 kb on - strand at 37.920 kb on + strand, within MPMX19_02803 at 37.920 kb on + strand, within MPMX19_02803 at 38.190 kb on + strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803 at 38.191 kb on - strand, within MPMX19_02803
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 35,653 + MPMX19_02800 0.80 -0.5 35,653 + MPMX19_02800 0.80 -0.7 35,654 - MPMX19_02800 0.80 -0.8 35,654 - MPMX19_02800 0.80 +0.1 35,654 - MPMX19_02800 0.80 -0.8 35,654 - MPMX19_02800 0.80 -0.1 35,654 - MPMX19_02800 0.80 -0.9 35,654 - MPMX19_02800 0.80 +0.1 35,654 - MPMX19_02800 0.80 -0.6 35,655 + MPMX19_02800 0.80 +1.1 35,656 - MPMX19_02800 0.81 -1.9 36,331 - MPMX19_02801 0.61 -2.3 36,331 - MPMX19_02801 0.61 +0.6 36,331 - MPMX19_02801 0.61 +0.3 36,331 - MPMX19_02801 0.61 -0.5 36,331 - MPMX19_02801 0.61 +1.3 36,612 + -1.1 36,612 + -0.1 36,612 + -1.3 36,612 + -0.3 36,612 + -0.8 36,613 - +0.2 36,613 - +0.5 36,613 - -1.9 36,639 + +1.8 36,639 + -1.1 36,639 + -0.0 36,639 + -0.9 36,640 - -0.5 36,640 - -1.1 36,831 + MPMX19_02802 0.28 +0.6 36,832 - MPMX19_02802 0.28 +0.1 36,989 - MPMX19_02802 0.50 -0.5 36,989 - MPMX19_02802 0.50 +0.8 36,989 - MPMX19_02802 0.50 +0.1 37,249 + MPMX19_02802 0.87 -0.8 37,249 + MPMX19_02802 0.87 +0.6 37,249 + MPMX19_02802 0.87 -0.8 37,249 + MPMX19_02802 0.87 +0.2 37,249 + MPMX19_02802 0.87 -0.5 37,249 + MPMX19_02802 0.87 +0.7 37,249 + MPMX19_02802 0.87 -0.7 37,249 + MPMX19_02802 0.87 -0.0 37,249 + MPMX19_02802 0.87 -0.3 37,250 - MPMX19_02802 0.87 +0.5 37,250 - MPMX19_02802 0.87 +0.1 37,250 - MPMX19_02802 0.87 -1.5 37,250 - MPMX19_02802 0.87 +0.6 37,250 - MPMX19_02802 0.87 +0.2 37,250 - MPMX19_02802 0.87 -0.8 37,250 - MPMX19_02802 0.87 -0.6 37,250 - MPMX19_02802 0.87 -1.1 37,250 - MPMX19_02802 0.87 -1.4 37,250 - MPMX19_02802 0.87 -0.1 37,250 - MPMX19_02802 0.87 +0.2 37,327 + -1.0 37,327 + -0.9 37,327 + +0.1 37,327 + +1.2 37,327 + -0.6 37,327 + -1.5 37,328 - +0.1 37,328 - -1.2 37,328 - -2.1 37,920 + MPMX19_02803 0.40 -2.9 37,920 + MPMX19_02803 0.40 -0.6 38,190 + MPMX19_02803 0.58 -0.1 38,191 - MPMX19_02803 0.58 -1.1 38,191 - MPMX19_02803 0.58 -0.4 38,191 - MPMX19_02803 0.58 -0.0
Or see this region's nucleotide sequence