Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02794 and MPMX19_02795 are separated by 26 nucleotides MPMX19_02795 and MPMX19_02796 are separated by 8 nucleotides MPMX19_02796 and MPMX19_02797 overlap by 17 nucleotides
MPMX19_02794: MPMX19_02794 - hypothetical protein, at 28,250 to 29,839
_02794
MPMX19_02795: MPMX19_02795 - Homoaconitase large subunit, at 29,866 to 31,122
_02795
MPMX19_02796: MPMX19_02796 - Methanogen homoaconitase small subunit, at 31,131 to 31,694
_02796
MPMX19_02797: MPMX19_02797 - 2,3-dimethylmalate lyase, at 31,678 to 32,538
_02797
Position (kb) 29
30
31
32 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 29.495 kb on + strand, within MPMX19_02794 at 29.495 kb on + strand, within MPMX19_02794 at 29.495 kb on + strand, within MPMX19_02794 at 29.495 kb on + strand, within MPMX19_02794 at 29.496 kb on - strand, within MPMX19_02794 at 29.496 kb on - strand, within MPMX19_02794 at 29.496 kb on - strand, within MPMX19_02794 at 29.496 kb on - strand, within MPMX19_02794 at 29.549 kb on + strand, within MPMX19_02794 at 29.549 kb on + strand, within MPMX19_02794 at 29.549 kb on + strand, within MPMX19_02794 at 29.550 kb on - strand, within MPMX19_02794 at 29.550 kb on - strand, within MPMX19_02794 at 29.684 kb on + strand at 29.684 kb on + strand at 29.684 kb on + strand at 29.684 kb on + strand at 29.684 kb on + strand at 29.684 kb on + strand at 29.685 kb on - strand at 29.685 kb on - strand at 29.685 kb on - strand at 29.685 kb on - strand at 29.685 kb on - strand at 29.685 kb on - strand at 29.727 kb on - strand at 29.872 kb on + strand at 29.872 kb on + strand at 29.872 kb on + strand at 29.872 kb on + strand at 29.873 kb on - strand at 29.873 kb on - strand at 29.968 kb on + strand at 29.968 kb on + strand at 29.969 kb on - strand at 29.995 kb on + strand, within MPMX19_02795 at 29.995 kb on + strand, within MPMX19_02795 at 29.996 kb on - strand, within MPMX19_02795 at 29.996 kb on - strand, within MPMX19_02795 at 29.996 kb on - strand, within MPMX19_02795 at 30.072 kb on + strand, within MPMX19_02795 at 30.072 kb on + strand, within MPMX19_02795 at 30.072 kb on + strand, within MPMX19_02795 at 30.072 kb on + strand, within MPMX19_02795 at 30.072 kb on + strand, within MPMX19_02795 at 30.073 kb on - strand, within MPMX19_02795 at 30.073 kb on - strand, within MPMX19_02795 at 30.073 kb on - strand, within MPMX19_02795 at 30.073 kb on - strand, within MPMX19_02795 at 30.073 kb on - strand, within MPMX19_02795 at 30.073 kb on - strand, within MPMX19_02795 at 30.073 kb on - strand, within MPMX19_02795 at 30.199 kb on + strand, within MPMX19_02795 at 30.200 kb on - strand, within MPMX19_02795 at 30.200 kb on - strand, within MPMX19_02795 at 30.571 kb on + strand, within MPMX19_02795 at 30.571 kb on + strand, within MPMX19_02795 at 30.571 kb on + strand, within MPMX19_02795 at 30.572 kb on - strand, within MPMX19_02795 at 30.572 kb on - strand, within MPMX19_02795 at 30.572 kb on - strand, within MPMX19_02795 at 30.631 kb on + strand, within MPMX19_02795 at 30.632 kb on - strand, within MPMX19_02795 at 30.632 kb on - strand, within MPMX19_02795 at 30.632 kb on - strand, within MPMX19_02795 at 30.748 kb on + strand, within MPMX19_02795 at 30.946 kb on + strand, within MPMX19_02795 at 30.947 kb on - strand, within MPMX19_02795 at 30.947 kb on - strand, within MPMX19_02795 at 31.048 kb on + strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.049 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.115 kb on - strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.148 kb on + strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.149 kb on - strand at 31.151 kb on + strand at 31.151 kb on + strand at 31.151 kb on + strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.152 kb on - strand at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.281 kb on + strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.282 kb on - strand, within MPMX19_02796 at 31.362 kb on + strand, within MPMX19_02796 at 31.744 kb on + strand at 31.744 kb on + strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.745 kb on - strand at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.852 kb on + strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797 at 31.853 kb on - strand, within MPMX19_02797
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 29,495 + MPMX19_02794 0.78 -1.8 29,495 + MPMX19_02794 0.78 +0.2 29,495 + MPMX19_02794 0.78 +0.9 29,495 + MPMX19_02794 0.78 +0.0 29,496 - MPMX19_02794 0.78 +0.1 29,496 - MPMX19_02794 0.78 -0.1 29,496 - MPMX19_02794 0.78 +0.6 29,496 - MPMX19_02794 0.78 -0.3 29,549 + MPMX19_02794 0.82 -2.4 29,549 + MPMX19_02794 0.82 -0.6 29,549 + MPMX19_02794 0.82 +0.1 29,550 - MPMX19_02794 0.82 -0.2 29,550 - MPMX19_02794 0.82 +1.2 29,684 + -1.6 29,684 + -1.1 29,684 + +0.5 29,684 + +0.4 29,684 + -0.9 29,684 + -0.6 29,685 - -0.2 29,685 - +0.1 29,685 - -1.0 29,685 - -1.1 29,685 - -1.8 29,685 - -0.4 29,727 - -0.7 29,872 + -0.2 29,872 + -0.8 29,872 + +0.4 29,872 + -0.4 29,873 - -0.1 29,873 - +0.2 29,968 + -0.3 29,968 + -0.8 29,969 - -0.1 29,995 + MPMX19_02795 0.10 -1.9 29,995 + MPMX19_02795 0.10 -1.6 29,996 - MPMX19_02795 0.10 -0.1 29,996 - MPMX19_02795 0.10 -2.4 29,996 - MPMX19_02795 0.10 +0.8 30,072 + MPMX19_02795 0.16 -2.1 30,072 + MPMX19_02795 0.16 +0.5 30,072 + MPMX19_02795 0.16 -0.2 30,072 + MPMX19_02795 0.16 -0.7 30,072 + MPMX19_02795 0.16 +1.6 30,073 - MPMX19_02795 0.16 -0.3 30,073 - MPMX19_02795 0.16 -0.0 30,073 - MPMX19_02795 0.16 +1.4 30,073 - MPMX19_02795 0.16 -0.3 30,073 - MPMX19_02795 0.16 +0.2 30,073 - MPMX19_02795 0.16 +0.3 30,073 - MPMX19_02795 0.16 -1.8 30,199 + MPMX19_02795 0.26 -1.2 30,200 - MPMX19_02795 0.27 +0.4 30,200 - MPMX19_02795 0.27 +2.1 30,571 + MPMX19_02795 0.56 +0.5 30,571 + MPMX19_02795 0.56 +0.1 30,571 + MPMX19_02795 0.56 -0.0 30,572 - MPMX19_02795 0.56 -0.2 30,572 - MPMX19_02795 0.56 +0.8 30,572 - MPMX19_02795 0.56 -0.3 30,631 + MPMX19_02795 0.61 -0.4 30,632 - MPMX19_02795 0.61 -0.7 30,632 - MPMX19_02795 0.61 +0.1 30,632 - MPMX19_02795 0.61 -0.8 30,748 + MPMX19_02795 0.70 -1.1 30,946 + MPMX19_02795 0.86 -0.9 30,947 - MPMX19_02795 0.86 +0.1 30,947 - MPMX19_02795 0.86 -0.5 31,048 + -1.4 31,049 - -0.0 31,049 - -0.6 31,049 - -0.3 31,049 - -0.4 31,049 - -2.1 31,049 - -0.8 31,115 - +0.3 31,115 - -0.0 31,115 - -2.0 31,115 - +0.2 31,148 + -0.1 31,148 + -1.9 31,148 + +0.4 31,148 + -0.0 31,148 + +0.4 31,148 + +0.7 31,148 + -0.6 31,148 + +1.1 31,148 + -1.3 31,148 + -2.3 31,148 + +0.1 31,148 + -1.1 31,148 + +0.5 31,148 + -0.3 31,148 + +0.5 31,148 + -0.3 31,148 + +0.3 31,148 + -0.3 31,148 + -1.1 31,149 - +0.1 31,149 - -1.2 31,149 - -0.4 31,149 - +0.6 31,149 - -2.5 31,149 - +0.7 31,149 - -0.9 31,149 - +0.6 31,149 - -0.7 31,149 - -1.3 31,149 - -0.8 31,149 - -0.8 31,149 - -1.3 31,149 - -0.9 31,149 - -1.2 31,149 - +0.2 31,149 - -1.2 31,149 - -0.5 31,149 - -1.4 31,149 - +0.7 31,149 - -1.5 31,151 + -2.2 31,151 + -0.5 31,151 + -1.3 31,152 - -1.6 31,152 - +0.6 31,152 - +0.4 31,152 - -0.1 31,152 - -1.3 31,152 - -0.8 31,281 + MPMX19_02796 0.27 -1.0 31,281 + MPMX19_02796 0.27 +0.2 31,281 + MPMX19_02796 0.27 -0.3 31,281 + MPMX19_02796 0.27 -2.9 31,281 + MPMX19_02796 0.27 +0.1 31,281 + MPMX19_02796 0.27 -0.9 31,281 + MPMX19_02796 0.27 -0.3 31,281 + MPMX19_02796 0.27 +0.3 31,282 - MPMX19_02796 0.27 +0.8 31,282 - MPMX19_02796 0.27 -1.9 31,282 - MPMX19_02796 0.27 -0.6 31,282 - MPMX19_02796 0.27 -0.1 31,282 - MPMX19_02796 0.27 -0.1 31,282 - MPMX19_02796 0.27 -0.9 31,362 + MPMX19_02796 0.41 +0.1 31,744 + +0.7 31,744 + +0.1 31,745 - +0.2 31,745 - +0.1 31,745 - +0.4 31,745 - +0.1 31,745 - +0.9 31,852 + MPMX19_02797 0.20 -1.8 31,852 + MPMX19_02797 0.20 -0.5 31,852 + MPMX19_02797 0.20 -0.5 31,852 + MPMX19_02797 0.20 -0.8 31,852 + MPMX19_02797 0.20 -1.6 31,852 + MPMX19_02797 0.20 +0.3 31,852 + MPMX19_02797 0.20 -1.6 31,852 + MPMX19_02797 0.20 -0.7 31,852 + MPMX19_02797 0.20 -0.3 31,852 + MPMX19_02797 0.20 -0.7 31,852 + MPMX19_02797 0.20 -0.9 31,853 - MPMX19_02797 0.20 -0.8 31,853 - MPMX19_02797 0.20 -1.6 31,853 - MPMX19_02797 0.20 -0.0 31,853 - MPMX19_02797 0.20 -1.1 31,853 - MPMX19_02797 0.20 +0.2 31,853 - MPMX19_02797 0.20 +0.9 31,853 - MPMX19_02797 0.20 -0.8 31,853 - MPMX19_02797 0.20 -0.2 31,853 - MPMX19_02797 0.20 -0.7
Or see this region's nucleotide sequence