Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_02792

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_02791 and MPMX19_02792 are separated by 47 nucleotidesMPMX19_02792 and MPMX19_02793 are separated by 380 nucleotides MPMX19_02791: MPMX19_02791 - Haloalkane dehalogenase, at 24,385 to 26,001 _02791 MPMX19_02792: MPMX19_02792 - HTH-type transcriptional regulator KipR, at 26,049 to 26,942 _02792 MPMX19_02793: MPMX19_02793 - putative quorum-quenching lactonase YtnP, at 27,323 to 28,213 _02793 Position (kb) 26 27Strain fitness (log2 ratio) -3 -2 -1 0 1at 25.148 kb on - strand, within MPMX19_02791at 25.148 kb on - strand, within MPMX19_02791at 25.298 kb on - strand, within MPMX19_02791at 25.298 kb on - strand, within MPMX19_02791at 25.298 kb on - strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.537 kb on + strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.538 kb on - strand, within MPMX19_02791at 25.723 kb on + strand, within MPMX19_02791at 25.724 kb on - strand, within MPMX19_02791at 25.735 kb on + strand, within MPMX19_02791at 25.736 kb on - strand, within MPMX19_02791at 25.753 kb on + strand, within MPMX19_02791at 25.900 kb on + strandat 25.925 kb on + strandat 25.925 kb on + strandat 25.926 kb on - strandat 25.926 kb on - strandat 25.946 kb on - strandat 25.999 kb on + strandat 25.999 kb on + strandat 25.999 kb on + strandat 26.000 kb on - strandat 26.000 kb on - strandat 26.000 kb on - strandat 26.007 kb on + strandat 26.007 kb on + strandat 26.007 kb on + strandat 26.007 kb on + strandat 26.008 kb on - strandat 26.008 kb on - strandat 26.008 kb on - strandat 26.110 kb on + strandat 26.110 kb on + strandat 26.111 kb on - strandat 26.373 kb on - strand, within MPMX19_02792at 26.373 kb on - strand, within MPMX19_02792at 26.416 kb on + strand, within MPMX19_02792at 26.416 kb on + strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.417 kb on - strand, within MPMX19_02792at 26.542 kb on + strand, within MPMX19_02792at 26.542 kb on + strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.543 kb on - strand, within MPMX19_02792at 26.671 kb on + strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.672 kb on - strand, within MPMX19_02792at 26.804 kb on - strand, within MPMX19_02792at 26.804 kb on - strand, within MPMX19_02792at 26.942 kb on + strandat 26.942 kb on + strandat 26.943 kb on - strandat 26.958 kb on - strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.322 kb on + strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.323 kb on - strandat 27.413 kb on + strand, within MPMX19_02793at 27.413 kb on + strand, within MPMX19_02793at 27.414 kb on - strand, within MPMX19_02793at 27.414 kb on - strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.614 kb on + strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.615 kb on - strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.681 kb on + strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.682 kb on - strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.755 kb on + strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.756 kb on - strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.761 kb on + strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793at 27.762 kb on - strand, within MPMX19_02793

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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25,148 - MPMX19_02791 0.47 -0.6
25,148 - MPMX19_02791 0.47 -0.3
25,298 - MPMX19_02791 0.56 -0.8
25,298 - MPMX19_02791 0.56 -2.3
25,298 - MPMX19_02791 0.56 +0.2
25,537 + MPMX19_02791 0.71 -0.2
25,537 + MPMX19_02791 0.71 -0.3
25,537 + MPMX19_02791 0.71 -0.1
25,537 + MPMX19_02791 0.71 +1.6
25,537 + MPMX19_02791 0.71 -1.9
25,537 + MPMX19_02791 0.71 -0.4
25,537 + MPMX19_02791 0.71 -0.6
25,538 - MPMX19_02791 0.71 -0.4
25,538 - MPMX19_02791 0.71 +0.6
25,538 - MPMX19_02791 0.71 -1.2
25,538 - MPMX19_02791 0.71 -0.9
25,538 - MPMX19_02791 0.71 -0.3
25,538 - MPMX19_02791 0.71 -1.6
25,538 - MPMX19_02791 0.71 -1.1
25,538 - MPMX19_02791 0.71 -1.9
25,538 - MPMX19_02791 0.71 -2.3
25,538 - MPMX19_02791 0.71 -1.3
25,538 - MPMX19_02791 0.71 -0.1
25,723 + MPMX19_02791 0.83 -2.0
25,724 - MPMX19_02791 0.83 +1.1
25,735 + MPMX19_02791 0.83 -0.6
25,736 - MPMX19_02791 0.84 +0.5
25,753 + MPMX19_02791 0.85 -1.4
25,900 + -1.1
25,925 + +0.6
25,925 + +1.6
25,926 - -0.4
25,926 - +0.3
25,946 - -0.2
25,999 + -1.3
25,999 + +0.3
25,999 + -0.0
26,000 - -0.5
26,000 - -1.3
26,000 - +0.1
26,007 + -1.1
26,007 + -0.5
26,007 + +0.1
26,007 + -1.3
26,008 - +0.7
26,008 - -0.3
26,008 - +0.4
26,110 + +1.1
26,110 + -0.6
26,111 - +0.5
26,373 - MPMX19_02792 0.36 -1.5
26,373 - MPMX19_02792 0.36 -0.5
26,416 + MPMX19_02792 0.41 -1.1
26,416 + MPMX19_02792 0.41 -1.8
26,417 - MPMX19_02792 0.41 -0.5
26,417 - MPMX19_02792 0.41 -0.4
26,417 - MPMX19_02792 0.41 +0.1
26,542 + MPMX19_02792 0.55 -0.3
26,542 + MPMX19_02792 0.55 +0.6
26,543 - MPMX19_02792 0.55 -1.3
26,543 - MPMX19_02792 0.55 +1.1
26,543 - MPMX19_02792 0.55 -1.3
26,671 + MPMX19_02792 0.70 -0.1
26,672 - MPMX19_02792 0.70 -0.9
26,672 - MPMX19_02792 0.70 +1.1
26,672 - MPMX19_02792 0.70 -0.6
26,672 - MPMX19_02792 0.70 +0.1
26,672 - MPMX19_02792 0.70 -0.6
26,804 - MPMX19_02792 0.84 -1.4
26,804 - MPMX19_02792 0.84 -0.8
26,942 + +0.7
26,942 + -0.5
26,943 - +0.5
26,958 - -0.0
27,322 + -1.9
27,322 + -0.8
27,322 + -0.9
27,322 + -0.1
27,322 + -1.4
27,322 + -0.3
27,322 + -0.8
27,322 + +0.6
27,323 - -0.2
27,323 - -0.6
27,323 - +0.5
27,323 - +0.3
27,323 - -1.4
27,323 - -0.1
27,323 - -0.3
27,323 - -0.9
27,323 - +0.1
27,323 - -0.1
27,323 - -1.4
27,323 - +0.7
27,323 - +1.1
27,323 - -1.3
27,413 + MPMX19_02793 0.10 +0.5
27,413 + MPMX19_02793 0.10 -1.5
27,414 - MPMX19_02793 0.10 -1.0
27,414 - MPMX19_02793 0.10 +0.6
27,614 + MPMX19_02793 0.33 -0.5
27,614 + MPMX19_02793 0.33 -0.6
27,614 + MPMX19_02793 0.33 +0.3
27,615 - MPMX19_02793 0.33 -1.3
27,615 - MPMX19_02793 0.33 +0.7
27,615 - MPMX19_02793 0.33 -0.9
27,681 + MPMX19_02793 0.40 +0.5
27,681 + MPMX19_02793 0.40 +0.6
27,681 + MPMX19_02793 0.40 -1.4
27,681 + MPMX19_02793 0.40 +0.2
27,681 + MPMX19_02793 0.40 -0.9
27,681 + MPMX19_02793 0.40 -1.2
27,681 + MPMX19_02793 0.40 -0.8
27,681 + MPMX19_02793 0.40 -0.8
27,681 + MPMX19_02793 0.40 -1.7
27,681 + MPMX19_02793 0.40 +0.4
27,681 + MPMX19_02793 0.40 +0.2
27,681 + MPMX19_02793 0.40 -2.9
27,681 + MPMX19_02793 0.40 -1.9
27,682 - MPMX19_02793 0.40 -0.3
27,682 - MPMX19_02793 0.40 -0.6
27,682 - MPMX19_02793 0.40 -0.6
27,682 - MPMX19_02793 0.40 -0.2
27,682 - MPMX19_02793 0.40 -0.1
27,682 - MPMX19_02793 0.40 +0.1
27,682 - MPMX19_02793 0.40 -0.9
27,682 - MPMX19_02793 0.40 -0.4
27,682 - MPMX19_02793 0.40 -3.1
27,682 - MPMX19_02793 0.40 -0.5
27,755 + MPMX19_02793 0.48 +1.1
27,755 + MPMX19_02793 0.48 -1.8
27,755 + MPMX19_02793 0.48 -1.3
27,756 - MPMX19_02793 0.49 +0.3
27,756 - MPMX19_02793 0.49 -0.5
27,756 - MPMX19_02793 0.49 -2.3
27,761 + MPMX19_02793 0.49 -1.3
27,761 + MPMX19_02793 0.49 -1.3
27,761 + MPMX19_02793 0.49 -1.4
27,762 - MPMX19_02793 0.49 -1.1
27,762 - MPMX19_02793 0.49 -0.2
27,762 - MPMX19_02793 0.49 +0.7
27,762 - MPMX19_02793 0.49 -0.6
27,762 - MPMX19_02793 0.49 -0.5
27,762 - MPMX19_02793 0.49 -0.0

Or see this region's nucleotide sequence