Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02783 and MPMX19_02784 are separated by 12 nucleotides MPMX19_02784 and MPMX19_02785 overlap by 4 nucleotides MPMX19_02785 and MPMX19_02786 are separated by 28 nucleotides
MPMX19_02783: MPMX19_02783 - HTH-type transcriptional regulator DmlR, at 16,453 to 17,391
_02783
MPMX19_02784: MPMX19_02784 - phosphoglycerate mutase GpmB, at 17,404 to 18,117
_02784
MPMX19_02785: MPMX19_02785 - hypothetical protein, at 18,114 to 18,497
_02785
MPMX19_02786: MPMX19_02786 - hypothetical protein, at 18,526 to 19,581
_02786
Position (kb) 18
19 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.266 kb on + strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.267 kb on - strand, within MPMX19_02783 at 17.274 kb on - strand, within MPMX19_02783 at 17.274 kb on - strand, within MPMX19_02783 at 17.312 kb on + strand at 17.312 kb on + strand at 17.385 kb on + strand at 17.389 kb on + strand at 17.389 kb on + strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.390 kb on - strand at 17.561 kb on + strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.775 kb on - strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.780 kb on + strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 17.781 kb on - strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.038 kb on + strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.039 kb on - strand, within MPMX19_02784 at 18.068 kb on + strand at 18.069 kb on - strand at 18.069 kb on - strand at 18.696 kb on - strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.749 kb on + strand, within MPMX19_02786 at 18.750 kb on - strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.903 kb on + strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.904 kb on - strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.905 kb on + strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.906 kb on - strand, within MPMX19_02786 at 18.921 kb on - strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.986 kb on + strand, within MPMX19_02786 at 18.987 kb on - strand, within MPMX19_02786 at 19.014 kb on - strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.223 kb on + strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786 at 19.224 kb on - strand, within MPMX19_02786
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 17,266 + MPMX19_02783 0.87 +0.3 17,266 + MPMX19_02783 0.87 +0.1 17,266 + MPMX19_02783 0.87 -1.0 17,266 + MPMX19_02783 0.87 +0.2 17,266 + MPMX19_02783 0.87 -1.1 17,267 - MPMX19_02783 0.87 -0.6 17,267 - MPMX19_02783 0.87 -0.4 17,267 - MPMX19_02783 0.87 -0.6 17,267 - MPMX19_02783 0.87 +1.1 17,267 - MPMX19_02783 0.87 +0.7 17,267 - MPMX19_02783 0.87 -0.3 17,267 - MPMX19_02783 0.87 -0.8 17,274 - MPMX19_02783 0.87 -1.6 17,274 - MPMX19_02783 0.87 +0.5 17,312 + +0.6 17,312 + +0.1 17,385 + -2.9 17,389 + -1.5 17,389 + -0.3 17,390 - -0.3 17,390 - +0.5 17,390 - -1.4 17,390 - -0.4 17,561 + MPMX19_02784 0.22 -0.1 17,775 - MPMX19_02784 0.52 -0.4 17,775 - MPMX19_02784 0.52 -0.9 17,775 - MPMX19_02784 0.52 -0.9 17,775 - MPMX19_02784 0.52 -0.9 17,775 - MPMX19_02784 0.52 +0.1 17,775 - MPMX19_02784 0.52 -1.9 17,780 + MPMX19_02784 0.53 -1.9 17,780 + MPMX19_02784 0.53 -1.1 17,780 + MPMX19_02784 0.53 -0.3 17,780 + MPMX19_02784 0.53 -0.1 17,780 + MPMX19_02784 0.53 -2.1 17,780 + MPMX19_02784 0.53 +0.5 17,780 + MPMX19_02784 0.53 -1.0 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 +0.3 17,780 + MPMX19_02784 0.53 -0.8 17,780 + MPMX19_02784 0.53 -0.9 17,780 + MPMX19_02784 0.53 -1.3 17,780 + MPMX19_02784 0.53 -1.5 17,781 - MPMX19_02784 0.53 +0.1 17,781 - MPMX19_02784 0.53 -1.1 17,781 - MPMX19_02784 0.53 -0.8 17,781 - MPMX19_02784 0.53 +0.5 17,781 - MPMX19_02784 0.53 +0.6 17,781 - MPMX19_02784 0.53 -0.9 17,781 - MPMX19_02784 0.53 +0.2 17,781 - MPMX19_02784 0.53 +2.1 17,781 - MPMX19_02784 0.53 -1.6 18,038 + MPMX19_02784 0.89 +0.5 18,038 + MPMX19_02784 0.89 -0.9 18,038 + MPMX19_02784 0.89 -0.8 18,038 + MPMX19_02784 0.89 -0.1 18,038 + MPMX19_02784 0.89 +2.1 18,038 + MPMX19_02784 0.89 -1.1 18,038 + MPMX19_02784 0.89 -0.9 18,039 - MPMX19_02784 0.89 -0.2 18,039 - MPMX19_02784 0.89 -0.3 18,039 - MPMX19_02784 0.89 -0.9 18,039 - MPMX19_02784 0.89 -0.9 18,039 - MPMX19_02784 0.89 -2.1 18,039 - MPMX19_02784 0.89 -0.5 18,039 - MPMX19_02784 0.89 -0.9 18,068 + -0.3 18,069 - -0.9 18,069 - -0.7 18,696 - MPMX19_02786 0.16 -2.4 18,749 + MPMX19_02786 0.21 -0.8 18,749 + MPMX19_02786 0.21 +1.1 18,750 - MPMX19_02786 0.21 -1.1 18,903 + MPMX19_02786 0.36 +1.4 18,903 + MPMX19_02786 0.36 -2.2 18,903 + MPMX19_02786 0.36 -0.2 18,903 + MPMX19_02786 0.36 -1.4 18,903 + MPMX19_02786 0.36 -0.8 18,903 + MPMX19_02786 0.36 +0.1 18,903 + MPMX19_02786 0.36 -0.3 18,903 + MPMX19_02786 0.36 -1.0 18,903 + MPMX19_02786 0.36 -0.8 18,904 - MPMX19_02786 0.36 -0.1 18,904 - MPMX19_02786 0.36 -1.3 18,904 - MPMX19_02786 0.36 -0.5 18,904 - MPMX19_02786 0.36 -0.3 18,904 - MPMX19_02786 0.36 +0.1 18,904 - MPMX19_02786 0.36 +0.5 18,904 - MPMX19_02786 0.36 -0.5 18,905 + MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 -0.8 18,905 + MPMX19_02786 0.36 -1.3 18,905 + MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 +0.7 18,905 + MPMX19_02786 0.36 -0.8 18,905 + MPMX19_02786 0.36 -1.1 18,905 + MPMX19_02786 0.36 -1.6 18,905 + MPMX19_02786 0.36 -1.5 18,905 + MPMX19_02786 0.36 -1.8 18,905 + MPMX19_02786 0.36 -0.5 18,905 + MPMX19_02786 0.36 +0.1 18,905 + MPMX19_02786 0.36 -0.8 18,905 + MPMX19_02786 0.36 -0.6 18,905 + MPMX19_02786 0.36 +0.7 18,905 + MPMX19_02786 0.36 -1.3 18,905 + MPMX19_02786 0.36 +0.1 18,905 + MPMX19_02786 0.36 +0.4 18,905 + MPMX19_02786 0.36 -0.8 18,905 + MPMX19_02786 0.36 -0.4 18,905 + MPMX19_02786 0.36 -0.7 18,905 + MPMX19_02786 0.36 -2.1 18,906 - MPMX19_02786 0.36 +0.8 18,906 - MPMX19_02786 0.36 -0.0 18,906 - MPMX19_02786 0.36 +0.5 18,906 - MPMX19_02786 0.36 +0.1 18,906 - MPMX19_02786 0.36 -0.1 18,906 - MPMX19_02786 0.36 -1.1 18,906 - MPMX19_02786 0.36 -0.3 18,906 - MPMX19_02786 0.36 -1.2 18,906 - MPMX19_02786 0.36 -0.5 18,906 - MPMX19_02786 0.36 +0.5 18,906 - MPMX19_02786 0.36 +0.2 18,906 - MPMX19_02786 0.36 +0.7 18,906 - MPMX19_02786 0.36 +0.1 18,906 - MPMX19_02786 0.36 +0.6 18,906 - MPMX19_02786 0.36 +0.3 18,906 - MPMX19_02786 0.36 -1.8 18,906 - MPMX19_02786 0.36 -1.1 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 +0.3 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 -1.7 18,906 - MPMX19_02786 0.36 -1.3 18,906 - MPMX19_02786 0.36 -0.2 18,906 - MPMX19_02786 0.36 -0.5 18,906 - MPMX19_02786 0.36 +0.9 18,906 - MPMX19_02786 0.36 -0.1 18,906 - MPMX19_02786 0.36 -2.1 18,906 - MPMX19_02786 0.36 +0.2 18,921 - MPMX19_02786 0.37 +0.2 18,986 + MPMX19_02786 0.44 -1.5 18,986 + MPMX19_02786 0.44 -0.9 18,986 + MPMX19_02786 0.44 -1.8 18,986 + MPMX19_02786 0.44 -1.1 18,987 - MPMX19_02786 0.44 -0.4 19,014 - MPMX19_02786 0.46 -0.9 19,223 + MPMX19_02786 0.66 +0.1 19,223 + MPMX19_02786 0.66 -0.4 19,223 + MPMX19_02786 0.66 +0.1 19,223 + MPMX19_02786 0.66 -1.4 19,223 + MPMX19_02786 0.66 -0.8 19,223 + MPMX19_02786 0.66 -1.5 19,223 + MPMX19_02786 0.66 +0.7 19,223 + MPMX19_02786 0.66 -0.5 19,223 + MPMX19_02786 0.66 -0.1 19,223 + MPMX19_02786 0.66 -0.1 19,223 + MPMX19_02786 0.66 -0.8 19,223 + MPMX19_02786 0.66 +1.8 19,224 - MPMX19_02786 0.66 +0.3 19,224 - MPMX19_02786 0.66 -0.8 19,224 - MPMX19_02786 0.66 -1.5 19,224 - MPMX19_02786 0.66 -0.5 19,224 - MPMX19_02786 0.66 +1.2 19,224 - MPMX19_02786 0.66 -0.7 19,224 - MPMX19_02786 0.66 -1.3
Or see this region's nucleotide sequence