Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_02662 and MPMX19_02663 are separated by 121 nucleotides MPMX19_02663 and MPMX19_02664 are separated by 195 nucleotides MPMX19_02664 and MPMX19_02665 are separated by 52 nucleotides MPMX19_02665 and MPMX19_02666 overlap by 4 nucleotides
MPMX19_02662: MPMX19_02662 - tRNA-Leu, at 2,782,787 to 2,782,873
_02662
MPMX19_02663: MPMX19_02663 - Ribonuclease D, at 2,782,995 to 2,783,621
_02663
MPMX19_02664: MPMX19_02664 - Arabinose 5-phosphate isomerase KdsD, at 2,783,817 to 2,784,860
_02664
MPMX19_02665: MPMX19_02665 - Lipopolysaccharide export system protein LptC, at 2,784,913 to 2,785,680
_02665
MPMX19_02666: MPMX19_02666 - LPS-assembly protein LptD, at 2,785,677 to 2,786,573
_02666
Position (kb)
2783
2784
2785 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2782.882 kb on + strand at 2782.953 kb on + strand at 2782.953 kb on + strand at 2782.953 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2783.723 kb on + strand at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664 at 2784.512 kb on + strand, within MPMX19_02664
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 2,782,882 + -1.1 2,782,953 + -1.5 2,782,953 + -0.3 2,782,953 + -0.9 2,783,723 + -0.8 2,783,723 + -0.8 2,783,723 + -2.1 2,783,723 + -1.5 2,783,723 + -0.4 2,783,723 + +0.2 2,783,723 + -0.7 2,784,512 + MPMX19_02664 0.67 -0.1 2,784,512 + MPMX19_02664 0.67 +2.2 2,784,512 + MPMX19_02664 0.67 +0.4 2,784,512 + MPMX19_02664 0.67 -0.3 2,784,512 + MPMX19_02664 0.67 +0.7 2,784,512 + MPMX19_02664 0.67 -0.1 2,784,512 + MPMX19_02664 0.67 -0.1 2,784,512 + MPMX19_02664 0.67 -0.1
Or see this region's nucleotide sequence