Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01902 and MPMX19_01903 are separated by 83 nucleotides MPMX19_01903 and MPMX19_01904 are separated by 829 nucleotides
MPMX19_01902: MPMX19_01902 - hypothetical protein, at 1,988,044 to 1,988,988
_01902
MPMX19_01903: MPMX19_01903 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 1,989,072 to 1,989,740
_01903
MPMX19_01904: MPMX19_01904 - tRNA-Gly, at 1,990,570 to 1,990,644
_01904
Position (kb) 1989
1990 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.144 kb on + strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.145 kb on - strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.162 kb on + strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.163 kb on - strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.639 kb on + strand, within MPMX19_01902 at 1988.640 kb on - strand, within MPMX19_01902 at 1988.640 kb on - strand, within MPMX19_01902 at 1988.640 kb on - strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.780 kb on + strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.781 kb on - strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.864 kb on + strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.865 kb on - strand, within MPMX19_01902 at 1988.918 kb on + strand at 1988.919 kb on - strand at 1988.919 kb on - strand at 1989.059 kb on + strand at 1989.059 kb on + strand at 1989.060 kb on - strand at 1989.060 kb on - strand at 1989.060 kb on - strand at 1989.594 kb on - strand, within MPMX19_01903 at 1989.712 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.724 kb on + strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.725 kb on - strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.734 kb on + strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.735 kb on - strand at 1989.759 kb on + strand at 1989.759 kb on + strand at 1989.759 kb on + strand at 1989.759 kb on + strand at 1989.760 kb on - strand at 1989.760 kb on - strand at 1989.760 kb on - strand at 1989.787 kb on - strand at 1990.332 kb on + strand at 1990.332 kb on + strand at 1990.332 kb on + strand at 1990.333 kb on - strand at 1990.333 kb on - strand at 1990.340 kb on + strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.341 kb on - strand at 1990.438 kb on - strand at 1990.465 kb on + strand at 1990.465 kb on + strand at 1990.465 kb on + strand at 1990.466 kb on - strand at 1990.466 kb on - strand at 1990.466 kb on - strand at 1990.554 kb on - strand at 1990.554 kb on - strand at 1990.716 kb on + strand at 1990.716 kb on + strand at 1990.716 kb on + strand at 1990.716 kb on + strand at 1990.717 kb on - strand at 1990.717 kb on - strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.718 kb on + strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand at 1990.719 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 1,988,144 + MPMX19_01902 0.11 -0.1 1,988,144 + MPMX19_01902 0.11 -0.1 1,988,144 + MPMX19_01902 0.11 +0.1 1,988,144 + MPMX19_01902 0.11 -0.2 1,988,144 + MPMX19_01902 0.11 -1.4 1,988,144 + MPMX19_01902 0.11 -1.4 1,988,144 + MPMX19_01902 0.11 +0.1 1,988,144 + MPMX19_01902 0.11 -1.2 1,988,144 + MPMX19_01902 0.11 -0.9 1,988,144 + MPMX19_01902 0.11 -1.6 1,988,145 - MPMX19_01902 0.11 -0.9 1,988,145 - MPMX19_01902 0.11 -0.2 1,988,145 - MPMX19_01902 0.11 -0.0 1,988,145 - MPMX19_01902 0.11 +0.3 1,988,145 - MPMX19_01902 0.11 +0.1 1,988,145 - MPMX19_01902 0.11 +0.1 1,988,145 - MPMX19_01902 0.11 +0.1 1,988,162 + MPMX19_01902 0.12 -1.2 1,988,162 + MPMX19_01902 0.12 -2.6 1,988,162 + MPMX19_01902 0.12 -2.5 1,988,162 + MPMX19_01902 0.12 -1.1 1,988,162 + MPMX19_01902 0.12 -0.4 1,988,162 + MPMX19_01902 0.12 -1.4 1,988,162 + MPMX19_01902 0.12 -0.7 1,988,162 + MPMX19_01902 0.12 -1.2 1,988,163 - MPMX19_01902 0.13 -1.8 1,988,163 - MPMX19_01902 0.13 -1.2 1,988,163 - MPMX19_01902 0.13 -1.5 1,988,163 - MPMX19_01902 0.13 +0.6 1,988,163 - MPMX19_01902 0.13 -2.7 1,988,639 + MPMX19_01902 0.63 -0.4 1,988,639 + MPMX19_01902 0.63 -2.4 1,988,639 + MPMX19_01902 0.63 -1.5 1,988,639 + MPMX19_01902 0.63 -0.8 1,988,639 + MPMX19_01902 0.63 -1.6 1,988,639 + MPMX19_01902 0.63 +1.1 1,988,639 + MPMX19_01902 0.63 -0.4 1,988,639 + MPMX19_01902 0.63 +0.5 1,988,640 - MPMX19_01902 0.63 +0.3 1,988,640 - MPMX19_01902 0.63 -0.1 1,988,640 - MPMX19_01902 0.63 -1.6 1,988,780 + MPMX19_01902 0.78 -1.0 1,988,780 + MPMX19_01902 0.78 -0.7 1,988,780 + MPMX19_01902 0.78 +0.5 1,988,780 + MPMX19_01902 0.78 +0.4 1,988,780 + MPMX19_01902 0.78 +0.5 1,988,780 + MPMX19_01902 0.78 +0.1 1,988,780 + MPMX19_01902 0.78 +0.3 1,988,780 + MPMX19_01902 0.78 +0.4 1,988,780 + MPMX19_01902 0.78 -0.1 1,988,781 - MPMX19_01902 0.78 +0.1 1,988,781 - MPMX19_01902 0.78 -1.1 1,988,781 - MPMX19_01902 0.78 -1.8 1,988,781 - MPMX19_01902 0.78 -1.1 1,988,781 - MPMX19_01902 0.78 -1.8 1,988,781 - MPMX19_01902 0.78 -0.5 1,988,781 - MPMX19_01902 0.78 -0.4 1,988,781 - MPMX19_01902 0.78 -0.9 1,988,781 - MPMX19_01902 0.78 -1.1 1,988,781 - MPMX19_01902 0.78 -0.6 1,988,781 - MPMX19_01902 0.78 -0.6 1,988,781 - MPMX19_01902 0.78 -0.9 1,988,781 - MPMX19_01902 0.78 -0.4 1,988,781 - MPMX19_01902 0.78 -0.4 1,988,781 - MPMX19_01902 0.78 -1.1 1,988,864 + MPMX19_01902 0.87 -1.7 1,988,864 + MPMX19_01902 0.87 -1.4 1,988,864 + MPMX19_01902 0.87 +0.2 1,988,864 + MPMX19_01902 0.87 -0.7 1,988,864 + MPMX19_01902 0.87 +0.1 1,988,864 + MPMX19_01902 0.87 +0.2 1,988,864 + MPMX19_01902 0.87 -0.0 1,988,864 + MPMX19_01902 0.87 +0.3 1,988,864 + MPMX19_01902 0.87 -1.6 1,988,864 + MPMX19_01902 0.87 -0.1 1,988,864 + MPMX19_01902 0.87 -0.2 1,988,864 + MPMX19_01902 0.87 -0.6 1,988,864 + MPMX19_01902 0.87 -2.6 1,988,864 + MPMX19_01902 0.87 -0.7 1,988,864 + MPMX19_01902 0.87 -0.9 1,988,864 + MPMX19_01902 0.87 -0.7 1,988,864 + MPMX19_01902 0.87 -0.7 1,988,864 + MPMX19_01902 0.87 +1.0 1,988,864 + MPMX19_01902 0.87 -1.6 1,988,864 + MPMX19_01902 0.87 -2.0 1,988,864 + MPMX19_01902 0.87 -0.6 1,988,864 + MPMX19_01902 0.87 -0.2 1,988,864 + MPMX19_01902 0.87 -1.5 1,988,864 + MPMX19_01902 0.87 +0.5 1,988,864 + MPMX19_01902 0.87 -1.8 1,988,864 + MPMX19_01902 0.87 -0.2 1,988,864 + MPMX19_01902 0.87 +0.4 1,988,864 + MPMX19_01902 0.87 +0.1 1,988,864 + MPMX19_01902 0.87 -1.1 1,988,864 + MPMX19_01902 0.87 -1.1 1,988,864 + MPMX19_01902 0.87 -1.6 1,988,864 + MPMX19_01902 0.87 -0.6 1,988,864 + MPMX19_01902 0.87 -0.9 1,988,864 + MPMX19_01902 0.87 -0.9 1,988,864 + MPMX19_01902 0.87 -1.1 1,988,864 + MPMX19_01902 0.87 -0.4 1,988,864 + MPMX19_01902 0.87 +1.6 1,988,864 + MPMX19_01902 0.87 +0.3 1,988,864 + MPMX19_01902 0.87 -0.6 1,988,864 + MPMX19_01902 0.87 +1.1 1,988,865 - MPMX19_01902 0.87 -0.2 1,988,865 - MPMX19_01902 0.87 -0.1 1,988,865 - MPMX19_01902 0.87 -2.8 1,988,865 - MPMX19_01902 0.87 +0.8 1,988,865 - MPMX19_01902 0.87 -1.6 1,988,865 - MPMX19_01902 0.87 -0.2 1,988,865 - MPMX19_01902 0.87 +1.3 1,988,865 - MPMX19_01902 0.87 +1.1 1,988,865 - MPMX19_01902 0.87 +0.2 1,988,865 - MPMX19_01902 0.87 -0.5 1,988,865 - MPMX19_01902 0.87 +0.7 1,988,865 - MPMX19_01902 0.87 -0.5 1,988,865 - MPMX19_01902 0.87 +1.1 1,988,865 - MPMX19_01902 0.87 +0.1 1,988,865 - MPMX19_01902 0.87 -0.7 1,988,865 - MPMX19_01902 0.87 -0.9 1,988,865 - MPMX19_01902 0.87 -1.1 1,988,865 - MPMX19_01902 0.87 -0.9 1,988,865 - MPMX19_01902 0.87 -0.4 1,988,865 - MPMX19_01902 0.87 -0.5 1,988,865 - MPMX19_01902 0.87 -0.4 1,988,865 - MPMX19_01902 0.87 +0.2 1,988,865 - MPMX19_01902 0.87 +0.1 1,988,865 - MPMX19_01902 0.87 -0.1 1,988,865 - MPMX19_01902 0.87 -1.4 1,988,865 - MPMX19_01902 0.87 -0.1 1,988,865 - MPMX19_01902 0.87 -0.4 1,988,865 - MPMX19_01902 0.87 -0.5 1,988,865 - MPMX19_01902 0.87 -1.6 1,988,865 - MPMX19_01902 0.87 -0.6 1,988,865 - MPMX19_01902 0.87 -2.2 1,988,865 - MPMX19_01902 0.87 +0.2 1,988,865 - MPMX19_01902 0.87 +0.2 1,988,918 + -2.5 1,988,919 - -1.2 1,988,919 - -2.2 1,989,059 + -0.1 1,989,059 + -1.4 1,989,060 - -2.5 1,989,060 - +0.4 1,989,060 - -0.2 1,989,594 - MPMX19_01903 0.78 -0.1 1,989,712 + -0.3 1,989,724 + -0.9 1,989,724 + +0.3 1,989,724 + -1.8 1,989,724 + -0.2 1,989,724 + -1.8 1,989,724 + -0.5 1,989,725 - -0.5 1,989,725 - -0.8 1,989,725 - -1.0 1,989,725 - -1.7 1,989,725 - -1.2 1,989,734 + +1.1 1,989,734 + -0.5 1,989,734 + -1.4 1,989,734 + -0.5 1,989,734 + +2.8 1,989,734 + -0.9 1,989,734 + -2.0 1,989,734 + -0.5 1,989,734 + -0.2 1,989,734 + +1.1 1,989,734 + -1.0 1,989,734 + -1.2 1,989,735 - -0.5 1,989,735 - -0.7 1,989,735 - -0.8 1,989,735 - -1.2 1,989,735 - +1.7 1,989,735 - -0.7 1,989,735 - -1.4 1,989,735 - +0.2 1,989,735 - -0.6 1,989,735 - -0.7 1,989,759 + -1.0 1,989,759 + +0.2 1,989,759 + +0.8 1,989,759 + -1.4 1,989,760 - +0.1 1,989,760 - -1.4 1,989,760 - -0.0 1,989,787 - -0.9 1,990,332 + -1.2 1,990,332 + -1.6 1,990,332 + -1.6 1,990,333 - -0.4 1,990,333 - +0.5 1,990,340 + +0.5 1,990,341 - -2.6 1,990,341 - -0.4 1,990,341 - +0.1 1,990,341 - -1.6 1,990,341 - -0.2 1,990,341 - -0.5 1,990,438 - +0.2 1,990,465 + -0.8 1,990,465 + -0.2 1,990,465 + -0.4 1,990,466 - -1.0 1,990,466 - -1.2 1,990,466 - +1.5 1,990,554 - -0.7 1,990,554 - -0.7 1,990,716 + -0.5 1,990,716 + +0.9 1,990,716 + -1.4 1,990,716 + -1.7 1,990,717 - -1.6 1,990,717 - -0.7 1,990,718 + +0.9 1,990,718 + -0.2 1,990,718 + -0.2 1,990,718 + -1.6 1,990,718 + -1.5 1,990,718 + -1.2 1,990,719 - -1.8 1,990,719 - +0.4 1,990,719 - +0.8 1,990,719 - -0.7 1,990,719 - -0.5 1,990,719 - -0.7 1,990,719 - -0.2 1,990,719 - +0.7
Or see this region's nucleotide sequence