Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01902

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01901 and MPMX19_01902 are separated by 622 nucleotidesMPMX19_01902 and MPMX19_01903 are separated by 83 nucleotides MPMX19_01901: MPMX19_01901 - hypothetical protein, at 1,985,724 to 1,987,421 _01901 MPMX19_01902: MPMX19_01902 - hypothetical protein, at 1,988,044 to 1,988,988 _01902 MPMX19_01903: MPMX19_01903 - 4-carboxy-4-hydroxy-2-oxoadipate aldolase, at 1,989,072 to 1,989,740 _01903 Position (kb) 1988 1989Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.210 kb on + strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.211 kb on - strand, within MPMX19_01901at 1987.724 kb on - strandat 1987.728 kb on + strandat 1987.728 kb on + strandat 1987.751 kb on - strandat 1987.802 kb on - strandat 1987.807 kb on - strandat 1987.899 kb on + strandat 1987.987 kb on - strandat 1987.997 kb on + strandat 1987.997 kb on + strandat 1987.998 kb on - strandat 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.144 kb on + strand, within MPMX19_01902at 1988.145 kb on - strand, within MPMX19_01902at 1988.145 kb on - strand, within MPMX19_01902at 1988.145 kb on - strand, within MPMX19_01902at 1988.145 kb on - strand, within MPMX19_01902at 1988.145 kb on - strand, within MPMX19_01902at 1988.145 kb on - strand, within MPMX19_01902at 1988.145 kb on - strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.162 kb on + strand, within MPMX19_01902at 1988.163 kb on - strand, within MPMX19_01902at 1988.163 kb on - strand, within MPMX19_01902at 1988.163 kb on - strand, within MPMX19_01902at 1988.163 kb on - strand, within MPMX19_01902at 1988.163 kb on - strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.639 kb on + strand, within MPMX19_01902at 1988.640 kb on - strand, within MPMX19_01902at 1988.640 kb on - strand, within MPMX19_01902at 1988.640 kb on - strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.780 kb on + strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.781 kb on - strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.864 kb on + strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.865 kb on - strand, within MPMX19_01902at 1988.918 kb on + strandat 1988.919 kb on - strandat 1988.919 kb on - strandat 1989.059 kb on + strandat 1989.059 kb on + strandat 1989.060 kb on - strandat 1989.060 kb on - strandat 1989.060 kb on - strandat 1989.594 kb on - strand, within MPMX19_01903at 1989.712 kb on + strandat 1989.724 kb on + strandat 1989.724 kb on + strandat 1989.724 kb on + strandat 1989.724 kb on + strandat 1989.724 kb on + strandat 1989.724 kb on + strandat 1989.725 kb on - strandat 1989.725 kb on - strandat 1989.725 kb on - strandat 1989.725 kb on - strandat 1989.725 kb on - strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.734 kb on + strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.735 kb on - strandat 1989.759 kb on + strandat 1989.759 kb on + strandat 1989.759 kb on + strandat 1989.759 kb on + strandat 1989.760 kb on - strandat 1989.760 kb on - strandat 1989.760 kb on - strandat 1989.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,987,210 + MPMX19_01901 0.88 -0.4
1,987,210 + MPMX19_01901 0.88 -0.9
1,987,210 + MPMX19_01901 0.88 -0.8
1,987,210 + MPMX19_01901 0.88 +0.7
1,987,210 + MPMX19_01901 0.88 -1.2
1,987,210 + MPMX19_01901 0.88 -0.2
1,987,210 + MPMX19_01901 0.88 -0.2
1,987,210 + MPMX19_01901 0.88 -1.4
1,987,210 + MPMX19_01901 0.88 -1.0
1,987,210 + MPMX19_01901 0.88 -1.6
1,987,210 + MPMX19_01901 0.88 -1.4
1,987,210 + MPMX19_01901 0.88 -0.2
1,987,210 + MPMX19_01901 0.88 -1.0
1,987,210 + MPMX19_01901 0.88 -0.9
1,987,210 + MPMX19_01901 0.88 -0.1
1,987,210 + MPMX19_01901 0.88 +0.7
1,987,211 - MPMX19_01901 0.88 +0.3
1,987,211 - MPMX19_01901 0.88 -1.6
1,987,211 - MPMX19_01901 0.88 -0.9
1,987,211 - MPMX19_01901 0.88 -0.5
1,987,211 - MPMX19_01901 0.88 +0.2
1,987,211 - MPMX19_01901 0.88 -1.0
1,987,211 - MPMX19_01901 0.88 -0.7
1,987,211 - MPMX19_01901 0.88 -0.2
1,987,211 - MPMX19_01901 0.88 -0.6
1,987,211 - MPMX19_01901 0.88 -0.1
1,987,211 - MPMX19_01901 0.88 -1.6
1,987,211 - MPMX19_01901 0.88 -1.2
1,987,211 - MPMX19_01901 0.88 -1.2
1,987,211 - MPMX19_01901 0.88 +1.8
1,987,724 - -1.2
1,987,728 + -0.2
1,987,728 + +0.3
1,987,751 - -2.4
1,987,802 - -0.5
1,987,807 - -0.1
1,987,899 + +0.3
1,987,987 - -0.2
1,987,997 + -1.2
1,987,997 + -1.2
1,987,998 - -1.2
1,988,144 + MPMX19_01902 0.11 -0.1
1,988,144 + MPMX19_01902 0.11 -0.1
1,988,144 + MPMX19_01902 0.11 +0.1
1,988,144 + MPMX19_01902 0.11 -0.2
1,988,144 + MPMX19_01902 0.11 -1.4
1,988,144 + MPMX19_01902 0.11 -1.4
1,988,144 + MPMX19_01902 0.11 +0.1
1,988,144 + MPMX19_01902 0.11 -1.2
1,988,144 + MPMX19_01902 0.11 -0.9
1,988,144 + MPMX19_01902 0.11 -1.6
1,988,145 - MPMX19_01902 0.11 -0.9
1,988,145 - MPMX19_01902 0.11 -0.2
1,988,145 - MPMX19_01902 0.11 -0.0
1,988,145 - MPMX19_01902 0.11 +0.3
1,988,145 - MPMX19_01902 0.11 +0.1
1,988,145 - MPMX19_01902 0.11 +0.1
1,988,145 - MPMX19_01902 0.11 +0.1
1,988,162 + MPMX19_01902 0.12 -1.2
1,988,162 + MPMX19_01902 0.12 -2.6
1,988,162 + MPMX19_01902 0.12 -2.5
1,988,162 + MPMX19_01902 0.12 -1.1
1,988,162 + MPMX19_01902 0.12 -0.4
1,988,162 + MPMX19_01902 0.12 -1.4
1,988,162 + MPMX19_01902 0.12 -0.7
1,988,162 + MPMX19_01902 0.12 -1.2
1,988,163 - MPMX19_01902 0.13 -1.8
1,988,163 - MPMX19_01902 0.13 -1.2
1,988,163 - MPMX19_01902 0.13 -1.5
1,988,163 - MPMX19_01902 0.13 +0.6
1,988,163 - MPMX19_01902 0.13 -2.7
1,988,639 + MPMX19_01902 0.63 -0.4
1,988,639 + MPMX19_01902 0.63 -2.4
1,988,639 + MPMX19_01902 0.63 -1.5
1,988,639 + MPMX19_01902 0.63 -0.8
1,988,639 + MPMX19_01902 0.63 -1.6
1,988,639 + MPMX19_01902 0.63 +1.1
1,988,639 + MPMX19_01902 0.63 -0.4
1,988,639 + MPMX19_01902 0.63 +0.5
1,988,640 - MPMX19_01902 0.63 +0.3
1,988,640 - MPMX19_01902 0.63 -0.1
1,988,640 - MPMX19_01902 0.63 -1.6
1,988,780 + MPMX19_01902 0.78 -1.0
1,988,780 + MPMX19_01902 0.78 -0.7
1,988,780 + MPMX19_01902 0.78 +0.5
1,988,780 + MPMX19_01902 0.78 +0.4
1,988,780 + MPMX19_01902 0.78 +0.5
1,988,780 + MPMX19_01902 0.78 +0.1
1,988,780 + MPMX19_01902 0.78 +0.3
1,988,780 + MPMX19_01902 0.78 +0.4
1,988,780 + MPMX19_01902 0.78 -0.1
1,988,781 - MPMX19_01902 0.78 +0.1
1,988,781 - MPMX19_01902 0.78 -1.1
1,988,781 - MPMX19_01902 0.78 -1.8
1,988,781 - MPMX19_01902 0.78 -1.1
1,988,781 - MPMX19_01902 0.78 -1.8
1,988,781 - MPMX19_01902 0.78 -0.5
1,988,781 - MPMX19_01902 0.78 -0.4
1,988,781 - MPMX19_01902 0.78 -0.9
1,988,781 - MPMX19_01902 0.78 -1.1
1,988,781 - MPMX19_01902 0.78 -0.6
1,988,781 - MPMX19_01902 0.78 -0.6
1,988,781 - MPMX19_01902 0.78 -0.9
1,988,781 - MPMX19_01902 0.78 -0.4
1,988,781 - MPMX19_01902 0.78 -0.4
1,988,781 - MPMX19_01902 0.78 -1.1
1,988,864 + MPMX19_01902 0.87 -1.7
1,988,864 + MPMX19_01902 0.87 -1.4
1,988,864 + MPMX19_01902 0.87 +0.2
1,988,864 + MPMX19_01902 0.87 -0.7
1,988,864 + MPMX19_01902 0.87 +0.1
1,988,864 + MPMX19_01902 0.87 +0.2
1,988,864 + MPMX19_01902 0.87 -0.0
1,988,864 + MPMX19_01902 0.87 +0.3
1,988,864 + MPMX19_01902 0.87 -1.6
1,988,864 + MPMX19_01902 0.87 -0.1
1,988,864 + MPMX19_01902 0.87 -0.2
1,988,864 + MPMX19_01902 0.87 -0.6
1,988,864 + MPMX19_01902 0.87 -2.6
1,988,864 + MPMX19_01902 0.87 -0.7
1,988,864 + MPMX19_01902 0.87 -0.9
1,988,864 + MPMX19_01902 0.87 -0.7
1,988,864 + MPMX19_01902 0.87 -0.7
1,988,864 + MPMX19_01902 0.87 +1.0
1,988,864 + MPMX19_01902 0.87 -1.6
1,988,864 + MPMX19_01902 0.87 -2.0
1,988,864 + MPMX19_01902 0.87 -0.6
1,988,864 + MPMX19_01902 0.87 -0.2
1,988,864 + MPMX19_01902 0.87 -1.5
1,988,864 + MPMX19_01902 0.87 +0.5
1,988,864 + MPMX19_01902 0.87 -1.8
1,988,864 + MPMX19_01902 0.87 -0.2
1,988,864 + MPMX19_01902 0.87 +0.4
1,988,864 + MPMX19_01902 0.87 +0.1
1,988,864 + MPMX19_01902 0.87 -1.1
1,988,864 + MPMX19_01902 0.87 -1.1
1,988,864 + MPMX19_01902 0.87 -1.6
1,988,864 + MPMX19_01902 0.87 -0.6
1,988,864 + MPMX19_01902 0.87 -0.9
1,988,864 + MPMX19_01902 0.87 -0.9
1,988,864 + MPMX19_01902 0.87 -1.1
1,988,864 + MPMX19_01902 0.87 -0.4
1,988,864 + MPMX19_01902 0.87 +1.6
1,988,864 + MPMX19_01902 0.87 +0.3
1,988,864 + MPMX19_01902 0.87 -0.6
1,988,864 + MPMX19_01902 0.87 +1.1
1,988,865 - MPMX19_01902 0.87 -0.2
1,988,865 - MPMX19_01902 0.87 -0.1
1,988,865 - MPMX19_01902 0.87 -2.8
1,988,865 - MPMX19_01902 0.87 +0.8
1,988,865 - MPMX19_01902 0.87 -1.6
1,988,865 - MPMX19_01902 0.87 -0.2
1,988,865 - MPMX19_01902 0.87 +1.3
1,988,865 - MPMX19_01902 0.87 +1.1
1,988,865 - MPMX19_01902 0.87 +0.2
1,988,865 - MPMX19_01902 0.87 -0.5
1,988,865 - MPMX19_01902 0.87 +0.7
1,988,865 - MPMX19_01902 0.87 -0.5
1,988,865 - MPMX19_01902 0.87 +1.1
1,988,865 - MPMX19_01902 0.87 +0.1
1,988,865 - MPMX19_01902 0.87 -0.7
1,988,865 - MPMX19_01902 0.87 -0.9
1,988,865 - MPMX19_01902 0.87 -1.1
1,988,865 - MPMX19_01902 0.87 -0.9
1,988,865 - MPMX19_01902 0.87 -0.4
1,988,865 - MPMX19_01902 0.87 -0.5
1,988,865 - MPMX19_01902 0.87 -0.4
1,988,865 - MPMX19_01902 0.87 +0.2
1,988,865 - MPMX19_01902 0.87 +0.1
1,988,865 - MPMX19_01902 0.87 -0.1
1,988,865 - MPMX19_01902 0.87 -1.4
1,988,865 - MPMX19_01902 0.87 -0.1
1,988,865 - MPMX19_01902 0.87 -0.4
1,988,865 - MPMX19_01902 0.87 -0.5
1,988,865 - MPMX19_01902 0.87 -1.6
1,988,865 - MPMX19_01902 0.87 -0.6
1,988,865 - MPMX19_01902 0.87 -2.2
1,988,865 - MPMX19_01902 0.87 +0.2
1,988,865 - MPMX19_01902 0.87 +0.2
1,988,918 + -2.5
1,988,919 - -1.2
1,988,919 - -2.2
1,989,059 + -0.1
1,989,059 + -1.4
1,989,060 - -2.5
1,989,060 - +0.4
1,989,060 - -0.2
1,989,594 - MPMX19_01903 0.78 -0.1
1,989,712 + -0.3
1,989,724 + -0.9
1,989,724 + +0.3
1,989,724 + -1.8
1,989,724 + -0.2
1,989,724 + -1.8
1,989,724 + -0.5
1,989,725 - -0.5
1,989,725 - -0.8
1,989,725 - -1.0
1,989,725 - -1.7
1,989,725 - -1.2
1,989,734 + +1.1
1,989,734 + -0.5
1,989,734 + -1.4
1,989,734 + -0.5
1,989,734 + +2.8
1,989,734 + -0.9
1,989,734 + -2.0
1,989,734 + -0.5
1,989,734 + -0.2
1,989,734 + +1.1
1,989,734 + -1.0
1,989,734 + -1.2
1,989,735 - -0.5
1,989,735 - -0.7
1,989,735 - -0.8
1,989,735 - -1.2
1,989,735 - +1.7
1,989,735 - -0.7
1,989,735 - -1.4
1,989,735 - +0.2
1,989,735 - -0.6
1,989,735 - -0.7
1,989,759 + -1.0
1,989,759 + +0.2
1,989,759 + +0.8
1,989,759 + -1.4
1,989,760 - +0.1
1,989,760 - -1.4
1,989,760 - -0.0
1,989,787 - -0.9

Or see this region's nucleotide sequence