Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01797

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01795 and MPMX19_01796 are separated by 31 nucleotidesMPMX19_01796 and MPMX19_01797 are separated by 63 nucleotidesMPMX19_01797 and MPMX19_01798 are separated by 51 nucleotidesMPMX19_01798 and MPMX19_01799 are separated by 165 nucleotides MPMX19_01795: MPMX19_01795 - hypothetical protein, at 1,880,416 to 1,880,772 _01795 MPMX19_01796: MPMX19_01796 - hypothetical protein, at 1,880,804 to 1,881,274 _01796 MPMX19_01797: MPMX19_01797 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,881,338 to 1,882,630 _01797 MPMX19_01798: MPMX19_01798 - dCTP deaminase, at 1,882,682 to 1,883,236 _01798 MPMX19_01799: MPMX19_01799 - Acetyltransferase, at 1,883,402 to 1,883,833 _01799 Position (kb) 1881 1882 1883Strain fitness (log2 ratio) -2 -1 0 1 2at 1880.382 kb on + strandat 1880.383 kb on - strandat 1880.383 kb on - strandat 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.707 kb on + strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.708 kb on - strand, within MPMX19_01795at 1880.750 kb on - strandat 1881.054 kb on + strand, within MPMX19_01796at 1881.055 kb on - strand, within MPMX19_01796at 1881.055 kb on - strand, within MPMX19_01796at 1881.339 kb on + strandat 1881.339 kb on + strandat 1881.339 kb on + strandat 1881.340 kb on - strandat 1881.340 kb on - strandat 1881.340 kb on - strandat 1882.674 kb on - strandat 1883.258 kb on - strandat 1883.294 kb on - strandat 1883.294 kb on - strandat 1883.356 kb on - strandat 1883.356 kb on - strandat 1883.356 kb on - strandat 1883.356 kb on - strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.388 kb on + strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.389 kb on - strandat 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.465 kb on + strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.466 kb on - strand, within MPMX19_01799at 1883.483 kb on + strand, within MPMX19_01799at 1883.483 kb on + strand, within MPMX19_01799at 1883.483 kb on + strand, within MPMX19_01799at 1883.483 kb on + strand, within MPMX19_01799at 1883.483 kb on + strand, within MPMX19_01799at 1883.483 kb on + strand, within MPMX19_01799at 1883.484 kb on - strand, within MPMX19_01799at 1883.484 kb on - strand, within MPMX19_01799at 1883.484 kb on - strand, within MPMX19_01799at 1883.484 kb on - strand, within MPMX19_01799at 1883.484 kb on - strand, within MPMX19_01799at 1883.510 kb on + strand, within MPMX19_01799at 1883.510 kb on + strand, within MPMX19_01799at 1883.510 kb on + strand, within MPMX19_01799at 1883.511 kb on - strand, within MPMX19_01799at 1883.511 kb on - strand, within MPMX19_01799at 1883.511 kb on - strand, within MPMX19_01799at 1883.511 kb on - strand, within MPMX19_01799at 1883.511 kb on - strand, within MPMX19_01799at 1883.511 kb on - strand, within MPMX19_01799at 1883.579 kb on + strand, within MPMX19_01799at 1883.579 kb on + strand, within MPMX19_01799at 1883.580 kb on - strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.600 kb on + strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799at 1883.601 kb on - strand, within MPMX19_01799

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,880,382 + -1.4
1,880,383 - +0.9
1,880,383 - -0.5
1,880,707 + MPMX19_01795 0.82 +0.3
1,880,707 + MPMX19_01795 0.82 -1.4
1,880,707 + MPMX19_01795 0.82 -0.4
1,880,707 + MPMX19_01795 0.82 -0.8
1,880,707 + MPMX19_01795 0.82 +0.1
1,880,707 + MPMX19_01795 0.82 -0.1
1,880,707 + MPMX19_01795 0.82 -0.6
1,880,707 + MPMX19_01795 0.82 -0.4
1,880,707 + MPMX19_01795 0.82 +0.3
1,880,707 + MPMX19_01795 0.82 -0.7
1,880,707 + MPMX19_01795 0.82 -1.7
1,880,707 + MPMX19_01795 0.82 -0.7
1,880,707 + MPMX19_01795 0.82 -0.6
1,880,707 + MPMX19_01795 0.82 +0.6
1,880,708 - MPMX19_01795 0.82 +1.4
1,880,708 - MPMX19_01795 0.82 -0.6
1,880,708 - MPMX19_01795 0.82 -0.1
1,880,708 - MPMX19_01795 0.82 -0.3
1,880,708 - MPMX19_01795 0.82 -0.5
1,880,708 - MPMX19_01795 0.82 -1.1
1,880,708 - MPMX19_01795 0.82 +0.6
1,880,708 - MPMX19_01795 0.82 -1.7
1,880,708 - MPMX19_01795 0.82 -1.3
1,880,708 - MPMX19_01795 0.82 -0.4
1,880,750 - -0.5
1,881,054 + MPMX19_01796 0.53 -0.2
1,881,055 - MPMX19_01796 0.53 -0.9
1,881,055 - MPMX19_01796 0.53 -0.8
1,881,339 + -0.6
1,881,339 + -0.7
1,881,339 + +0.9
1,881,340 - -0.1
1,881,340 - -0.5
1,881,340 - +0.6
1,882,674 - +0.3
1,883,258 - +0.5
1,883,294 - +1.7
1,883,294 - -0.4
1,883,356 - -1.4
1,883,356 - +0.2
1,883,356 - -0.1
1,883,356 - +0.7
1,883,388 + -1.3
1,883,388 + -0.9
1,883,388 + -0.5
1,883,388 + -1.2
1,883,388 + -0.8
1,883,388 + -0.7
1,883,388 + +0.5
1,883,388 + -1.1
1,883,388 + -0.5
1,883,388 + -0.5
1,883,388 + -1.3
1,883,388 + +0.2
1,883,388 + +0.3
1,883,388 + +0.2
1,883,388 + -1.6
1,883,388 + -1.5
1,883,389 - -2.0
1,883,389 - -0.9
1,883,389 - -0.4
1,883,389 - +2.1
1,883,389 - -1.2
1,883,389 - +0.7
1,883,389 - +0.5
1,883,389 - -0.4
1,883,389 - -1.6
1,883,389 - -1.0
1,883,389 - -1.8
1,883,465 + MPMX19_01799 0.15 -1.4
1,883,465 + MPMX19_01799 0.15 -1.8
1,883,465 + MPMX19_01799 0.15 -0.2
1,883,465 + MPMX19_01799 0.15 +0.5
1,883,465 + MPMX19_01799 0.15 -1.4
1,883,465 + MPMX19_01799 0.15 +0.2
1,883,465 + MPMX19_01799 0.15 +0.2
1,883,465 + MPMX19_01799 0.15 -0.5
1,883,465 + MPMX19_01799 0.15 -1.9
1,883,466 - MPMX19_01799 0.15 -0.8
1,883,466 - MPMX19_01799 0.15 -0.5
1,883,466 - MPMX19_01799 0.15 -0.4
1,883,466 - MPMX19_01799 0.15 -1.0
1,883,466 - MPMX19_01799 0.15 -0.1
1,883,466 - MPMX19_01799 0.15 -0.4
1,883,466 - MPMX19_01799 0.15 -0.4
1,883,466 - MPMX19_01799 0.15 -0.7
1,883,466 - MPMX19_01799 0.15 +0.1
1,883,483 + MPMX19_01799 0.19 +0.1
1,883,483 + MPMX19_01799 0.19 -2.1
1,883,483 + MPMX19_01799 0.19 +0.4
1,883,483 + MPMX19_01799 0.19 -0.7
1,883,483 + MPMX19_01799 0.19 -0.8
1,883,483 + MPMX19_01799 0.19 -0.3
1,883,484 - MPMX19_01799 0.19 +0.1
1,883,484 - MPMX19_01799 0.19 -2.0
1,883,484 - MPMX19_01799 0.19 -0.9
1,883,484 - MPMX19_01799 0.19 +0.5
1,883,484 - MPMX19_01799 0.19 -0.3
1,883,510 + MPMX19_01799 0.25 +0.1
1,883,510 + MPMX19_01799 0.25 -0.6
1,883,510 + MPMX19_01799 0.25 -1.4
1,883,511 - MPMX19_01799 0.25 -2.7
1,883,511 - MPMX19_01799 0.25 -0.1
1,883,511 - MPMX19_01799 0.25 +0.3
1,883,511 - MPMX19_01799 0.25 +0.1
1,883,511 - MPMX19_01799 0.25 +1.1
1,883,511 - MPMX19_01799 0.25 -1.4
1,883,579 + MPMX19_01799 0.41 -0.7
1,883,579 + MPMX19_01799 0.41 -0.3
1,883,580 - MPMX19_01799 0.41 -0.7
1,883,600 + MPMX19_01799 0.46 +1.1
1,883,600 + MPMX19_01799 0.46 -0.9
1,883,600 + MPMX19_01799 0.46 -0.7
1,883,600 + MPMX19_01799 0.46 -1.6
1,883,600 + MPMX19_01799 0.46 -0.8
1,883,600 + MPMX19_01799 0.46 -1.3
1,883,600 + MPMX19_01799 0.46 -2.4
1,883,600 + MPMX19_01799 0.46 -2.3
1,883,600 + MPMX19_01799 0.46 -2.1
1,883,600 + MPMX19_01799 0.46 +0.8
1,883,600 + MPMX19_01799 0.46 -0.4
1,883,600 + MPMX19_01799 0.46 -1.7
1,883,600 + MPMX19_01799 0.46 -0.7
1,883,600 + MPMX19_01799 0.46 -1.2
1,883,600 + MPMX19_01799 0.46 +0.7
1,883,600 + MPMX19_01799 0.46 +1.1
1,883,600 + MPMX19_01799 0.46 -1.6
1,883,600 + MPMX19_01799 0.46 -0.5
1,883,600 + MPMX19_01799 0.46 +0.7
1,883,600 + MPMX19_01799 0.46 -1.5
1,883,600 + MPMX19_01799 0.46 -0.3
1,883,600 + MPMX19_01799 0.46 +0.3
1,883,600 + MPMX19_01799 0.46 -0.4
1,883,601 - MPMX19_01799 0.46 +0.1
1,883,601 - MPMX19_01799 0.46 -0.3
1,883,601 - MPMX19_01799 0.46 -0.7
1,883,601 - MPMX19_01799 0.46 -1.4
1,883,601 - MPMX19_01799 0.46 -0.4
1,883,601 - MPMX19_01799 0.46 +0.2
1,883,601 - MPMX19_01799 0.46 +0.1
1,883,601 - MPMX19_01799 0.46 -1.5
1,883,601 - MPMX19_01799 0.46 +1.1
1,883,601 - MPMX19_01799 0.46 +0.3
1,883,601 - MPMX19_01799 0.46 -0.1
1,883,601 - MPMX19_01799 0.46 -1.8
1,883,601 - MPMX19_01799 0.46 -0.9
1,883,601 - MPMX19_01799 0.46 -0.4
1,883,601 - MPMX19_01799 0.46 -0.8
1,883,601 - MPMX19_01799 0.46 -0.9
1,883,601 - MPMX19_01799 0.46 -0.6
1,883,601 - MPMX19_01799 0.46 -0.8
1,883,601 - MPMX19_01799 0.46 +0.2
1,883,601 - MPMX19_01799 0.46 -1.6
1,883,601 - MPMX19_01799 0.46 -0.6
1,883,601 - MPMX19_01799 0.46 -0.0
1,883,601 - MPMX19_01799 0.46 -0.4
1,883,601 - MPMX19_01799 0.46 -0.4

Or see this region's nucleotide sequence