Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01656 and MPMX19_01657 are separated by 62 nucleotides MPMX19_01657 and MPMX19_01658 are separated by 110 nucleotides MPMX19_01658 and MPMX19_01659 are separated by 168 nucleotides MPMX19_01659 and MPMX19_01660 are separated by 114 nucleotides
MPMX19_01656: MPMX19_01656 - Co-chaperone protein HscB, at 1,738,878 to 1,739,573
_01656
MPMX19_01657: MPMX19_01657 - Ferredoxin-6, at 1,739,636 to 1,739,965
_01657
MPMX19_01658: MPMX19_01658 - tRNA-specific 2-thiouridylase MnmA, at 1,740,076 to 1,741,263
_01658
MPMX19_01659: MPMX19_01659 - tRNA-Met, at 1,741,432 to 1,741,506
_01659
MPMX19_01660: MPMX19_01660 - Response regulator PleD, at 1,741,621 to 1,742,535
_01660
Position (kb) 1740
1741
1742 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.089 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.217 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.412 kb on + strand, within MPMX19_01656 at 1739.587 kb on + strand at 1739.618 kb on + strand at 1739.618 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.063 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.065 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1740.067 kb on + strand at 1741.215 kb on - strand at 1741.215 kb on - strand at 1741.274 kb on + strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.275 kb on - strand at 1741.309 kb on + strand at 1741.510 kb on + strand at 1741.510 kb on + strand at 1741.510 kb on + strand at 1741.510 kb on + strand at 1741.623 kb on - strand at 1741.623 kb on - strand at 1741.698 kb on - strand at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.997 kb on + strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1741.998 kb on - strand, within MPMX19_01660 at 1742.060 kb on + strand, within MPMX19_01660 at 1742.060 kb on + strand, within MPMX19_01660 at 1742.060 kb on + strand, within MPMX19_01660 at 1742.061 kb on - strand, within MPMX19_01660 at 1742.061 kb on - strand, within MPMX19_01660 at 1742.061 kb on - strand, within MPMX19_01660 at 1742.076 kb on + strand, within MPMX19_01660 at 1742.076 kb on + strand, within MPMX19_01660
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 1,739,089 + MPMX19_01656 0.30 +0.3 1,739,089 + MPMX19_01656 0.30 +0.1 1,739,089 + MPMX19_01656 0.30 -0.2 1,739,089 + MPMX19_01656 0.30 -0.4 1,739,089 + MPMX19_01656 0.30 -1.1 1,739,089 + MPMX19_01656 0.30 -0.8 1,739,089 + MPMX19_01656 0.30 -1.2 1,739,089 + MPMX19_01656 0.30 +0.1 1,739,089 + MPMX19_01656 0.30 -0.9 1,739,089 + MPMX19_01656 0.30 -0.6 1,739,089 + MPMX19_01656 0.30 -1.1 1,739,089 + MPMX19_01656 0.30 -1.0 1,739,089 + MPMX19_01656 0.30 -0.2 1,739,089 + MPMX19_01656 0.30 -0.8 1,739,089 + MPMX19_01656 0.30 +0.0 1,739,089 + MPMX19_01656 0.30 -0.4 1,739,217 + MPMX19_01656 0.49 -0.8 1,739,217 + MPMX19_01656 0.49 -2.4 1,739,217 + MPMX19_01656 0.49 -0.1 1,739,217 + MPMX19_01656 0.49 +0.2 1,739,217 + MPMX19_01656 0.49 -1.6 1,739,217 + MPMX19_01656 0.49 +1.1 1,739,217 + MPMX19_01656 0.49 -0.8 1,739,217 + MPMX19_01656 0.49 -0.7 1,739,217 + MPMX19_01656 0.49 -0.4 1,739,217 + MPMX19_01656 0.49 -0.5 1,739,412 + MPMX19_01656 0.77 -0.4 1,739,412 + MPMX19_01656 0.77 -0.1 1,739,412 + MPMX19_01656 0.77 +0.1 1,739,412 + MPMX19_01656 0.77 -0.3 1,739,412 + MPMX19_01656 0.77 -1.2 1,739,412 + MPMX19_01656 0.77 -1.5 1,739,412 + MPMX19_01656 0.77 +0.3 1,739,412 + MPMX19_01656 0.77 +0.5 1,739,412 + MPMX19_01656 0.77 +0.4 1,739,412 + MPMX19_01656 0.77 -1.6 1,739,587 + -1.0 1,739,618 + -0.3 1,739,618 + -1.6 1,740,063 + -0.5 1,740,063 + +0.2 1,740,063 + +0.5 1,740,063 + -2.1 1,740,063 + +0.7 1,740,063 + -0.6 1,740,063 + -0.5 1,740,063 + +0.1 1,740,063 + -1.4 1,740,063 + +0.7 1,740,063 + -0.9 1,740,063 + -0.5 1,740,063 + +0.9 1,740,063 + -0.6 1,740,063 + +0.0 1,740,063 + -0.6 1,740,063 + -0.8 1,740,063 + +0.2 1,740,063 + -0.2 1,740,063 + +1.7 1,740,063 + +0.5 1,740,063 + -0.9 1,740,063 + +0.2 1,740,063 + -0.5 1,740,063 + -0.9 1,740,063 + -1.1 1,740,063 + -1.0 1,740,063 + -1.9 1,740,063 + -0.1 1,740,063 + +0.1 1,740,063 + +0.8 1,740,063 + -0.9 1,740,063 + -0.2 1,740,065 + +0.2 1,740,065 + -0.9 1,740,065 + -1.5 1,740,065 + +0.4 1,740,065 + -0.1 1,740,065 + -0.5 1,740,065 + -2.0 1,740,065 + -0.5 1,740,065 + +0.2 1,740,065 + -0.5 1,740,065 + -0.5 1,740,065 + +1.1 1,740,065 + +0.3 1,740,065 + -1.3 1,740,065 + -0.1 1,740,065 + -1.3 1,740,065 + -0.6 1,740,065 + -0.3 1,740,065 + +0.1 1,740,065 + -0.5 1,740,065 + +0.1 1,740,065 + -0.6 1,740,065 + -0.3 1,740,065 + -0.9 1,740,065 + +0.9 1,740,065 + -0.4 1,740,065 + +0.1 1,740,065 + -0.4 1,740,065 + -0.4 1,740,065 + -1.4 1,740,065 + -1.1 1,740,065 + -0.1 1,740,065 + -1.4 1,740,065 + -1.0 1,740,065 + -0.1 1,740,065 + +0.1 1,740,065 + -0.2 1,740,065 + +0.3 1,740,065 + +0.3 1,740,065 + -0.5 1,740,065 + +0.1 1,740,065 + -1.3 1,740,065 + -1.1 1,740,065 + -0.8 1,740,065 + -0.7 1,740,067 + +0.2 1,740,067 + -0.4 1,740,067 + -1.5 1,740,067 + -1.4 1,740,067 + -0.9 1,740,067 + +0.6 1,740,067 + -1.8 1,740,067 + +1.4 1,740,067 + +1.5 1,740,067 + -0.7 1,740,067 + -0.4 1,740,067 + -1.0 1,740,067 + -0.8 1,740,067 + -1.3 1,740,067 + +0.7 1,741,215 - -0.3 1,741,215 - -1.5 1,741,274 + -1.8 1,741,275 - -0.4 1,741,275 - -0.7 1,741,275 - -0.8 1,741,275 - -0.4 1,741,275 - -0.4 1,741,309 + -1.3 1,741,510 + +1.9 1,741,510 + -0.1 1,741,510 + +0.2 1,741,510 + +0.6 1,741,623 - -0.5 1,741,623 - -0.3 1,741,698 - -1.2 1,741,997 + MPMX19_01660 0.41 -1.6 1,741,997 + MPMX19_01660 0.41 +0.1 1,741,997 + MPMX19_01660 0.41 +0.8 1,741,997 + MPMX19_01660 0.41 -0.9 1,741,997 + MPMX19_01660 0.41 -1.4 1,741,997 + MPMX19_01660 0.41 +1.3 1,741,997 + MPMX19_01660 0.41 +0.6 1,741,997 + MPMX19_01660 0.41 -1.2 1,741,997 + MPMX19_01660 0.41 -0.9 1,741,997 + MPMX19_01660 0.41 -1.9 1,741,997 + MPMX19_01660 0.41 -1.5 1,741,997 + MPMX19_01660 0.41 -1.1 1,741,997 + MPMX19_01660 0.41 -2.6 1,741,997 + MPMX19_01660 0.41 -0.6 1,741,997 + MPMX19_01660 0.41 -1.1 1,741,997 + MPMX19_01660 0.41 -0.9 1,741,997 + MPMX19_01660 0.41 +0.2 1,741,997 + MPMX19_01660 0.41 +0.5 1,741,997 + MPMX19_01660 0.41 -2.9 1,741,997 + MPMX19_01660 0.41 -0.9 1,741,997 + MPMX19_01660 0.41 -0.8 1,741,997 + MPMX19_01660 0.41 +0.5 1,741,997 + MPMX19_01660 0.41 -0.3 1,741,997 + MPMX19_01660 0.41 -0.0 1,741,997 + MPMX19_01660 0.41 -0.9 1,741,997 + MPMX19_01660 0.41 -2.0 1,741,997 + MPMX19_01660 0.41 -1.6 1,741,998 - MPMX19_01660 0.41 +0.5 1,741,998 - MPMX19_01660 0.41 -0.5 1,741,998 - MPMX19_01660 0.41 +0.2 1,741,998 - MPMX19_01660 0.41 -1.9 1,741,998 - MPMX19_01660 0.41 +0.5 1,741,998 - MPMX19_01660 0.41 +0.4 1,741,998 - MPMX19_01660 0.41 -1.5 1,741,998 - MPMX19_01660 0.41 +0.7 1,741,998 - MPMX19_01660 0.41 -0.9 1,741,998 - MPMX19_01660 0.41 -1.8 1,741,998 - MPMX19_01660 0.41 -0.3 1,741,998 - MPMX19_01660 0.41 -0.3 1,741,998 - MPMX19_01660 0.41 +0.2 1,741,998 - MPMX19_01660 0.41 -1.6 1,741,998 - MPMX19_01660 0.41 -0.8 1,741,998 - MPMX19_01660 0.41 -1.3 1,741,998 - MPMX19_01660 0.41 -0.3 1,741,998 - MPMX19_01660 0.41 -0.4 1,741,998 - MPMX19_01660 0.41 -0.3 1,741,998 - MPMX19_01660 0.41 -0.8 1,741,998 - MPMX19_01660 0.41 -0.9 1,741,998 - MPMX19_01660 0.41 -1.1 1,741,998 - MPMX19_01660 0.41 +0.1 1,741,998 - MPMX19_01660 0.41 +0.7 1,742,060 + MPMX19_01660 0.48 -1.4 1,742,060 + MPMX19_01660 0.48 +0.1 1,742,060 + MPMX19_01660 0.48 -0.3 1,742,061 - MPMX19_01660 0.48 -0.1 1,742,061 - MPMX19_01660 0.48 -2.5 1,742,061 - MPMX19_01660 0.48 +0.5 1,742,076 + MPMX19_01660 0.50 -1.3 1,742,076 + MPMX19_01660 0.50 -0.5
Or see this region's nucleotide sequence