Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01653

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01652 and MPMX19_01653 are separated by 346 nucleotidesMPMX19_01653 and MPMX19_01654 overlap by 4 nucleotidesMPMX19_01654 and MPMX19_01655 are separated by 45 nucleotides MPMX19_01652: MPMX19_01652 - hypothetical protein, at 1,735,215 to 1,735,877 _01652 MPMX19_01653: MPMX19_01653 - Serine acetyltransferase, at 1,736,224 to 1,737,009 _01653 MPMX19_01654: MPMX19_01654 - HTH-type transcriptional regulator IscR, at 1,737,006 to 1,737,491 _01654 MPMX19_01655: MPMX19_01655 - Cysteine desulfurase NifS, at 1,737,537 to 1,738,688 _01655 Position (kb) 1736 1737 1738Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1735.262 kb on - strandat 1735.594 kb on + strand, within MPMX19_01652at 1735.594 kb on + strand, within MPMX19_01652at 1735.594 kb on + strand, within MPMX19_01652at 1735.594 kb on + strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.595 kb on - strand, within MPMX19_01652at 1735.654 kb on + strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.655 kb on - strand, within MPMX19_01652at 1735.719 kb on - strand, within MPMX19_01652at 1735.828 kb on + strandat 1735.828 kb on + strandat 1735.829 kb on - strandat 1736.050 kb on + strandat 1736.050 kb on + strandat 1736.050 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.052 kb on + strandat 1736.126 kb on + strandat 1736.126 kb on + strandat 1736.126 kb on + strandat 1736.239 kb on + strandat 1736.239 kb on + strandat 1736.239 kb on + strandat 1736.241 kb on + strandat 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.560 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.803 kb on + strand, within MPMX19_01653at 1736.804 kb on - strand, within MPMX19_01653at 1736.937 kb on + strandat 1736.937 kb on + strandat 1736.937 kb on + strandat 1736.937 kb on + strandat 1736.937 kb on + strandat 1736.938 kb on - strandat 1736.938 kb on - strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.030 kb on + strandat 1737.126 kb on + strand, within MPMX19_01654at 1737.126 kb on + strand, within MPMX19_01654at 1737.126 kb on + strand, within MPMX19_01654at 1737.126 kb on + strand, within MPMX19_01654at 1737.198 kb on + strand, within MPMX19_01654at 1737.198 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.368 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.372 kb on + strand, within MPMX19_01654at 1737.561 kb on + strandat 1737.561 kb on + strandat 1737.561 kb on + strandat 1737.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,735,262 - -1.1
1,735,594 + MPMX19_01652 0.57 +0.5
1,735,594 + MPMX19_01652 0.57 +0.1
1,735,594 + MPMX19_01652 0.57 -0.8
1,735,594 + MPMX19_01652 0.57 +0.1
1,735,595 - MPMX19_01652 0.57 +0.5
1,735,595 - MPMX19_01652 0.57 +0.5
1,735,595 - MPMX19_01652 0.57 +1.1
1,735,595 - MPMX19_01652 0.57 -1.4
1,735,595 - MPMX19_01652 0.57 -1.1
1,735,654 + MPMX19_01652 0.66 +0.2
1,735,655 - MPMX19_01652 0.66 -0.6
1,735,655 - MPMX19_01652 0.66 -1.3
1,735,655 - MPMX19_01652 0.66 +0.1
1,735,655 - MPMX19_01652 0.66 -0.3
1,735,655 - MPMX19_01652 0.66 +0.8
1,735,719 - MPMX19_01652 0.76 -0.3
1,735,828 + +0.5
1,735,828 + +0.7
1,735,829 - -1.6
1,736,050 + +0.1
1,736,050 + +0.5
1,736,050 + -0.6
1,736,052 + +0.1
1,736,052 + -0.3
1,736,052 + -0.3
1,736,052 + +0.1
1,736,052 + +0.7
1,736,052 + -0.3
1,736,126 + -0.3
1,736,126 + -0.8
1,736,126 + +2.1
1,736,239 + -0.8
1,736,239 + +1.6
1,736,239 + -1.6
1,736,241 + +0.2
1,736,560 + MPMX19_01653 0.43 -0.3
1,736,560 + MPMX19_01653 0.43 -0.2
1,736,560 + MPMX19_01653 0.43 -0.5
1,736,560 + MPMX19_01653 0.43 +0.3
1,736,560 + MPMX19_01653 0.43 -0.2
1,736,560 + MPMX19_01653 0.43 -0.3
1,736,560 + MPMX19_01653 0.43 +0.3
1,736,560 + MPMX19_01653 0.43 +0.5
1,736,560 + MPMX19_01653 0.43 -1.3
1,736,560 + MPMX19_01653 0.43 +0.7
1,736,560 + MPMX19_01653 0.43 -0.5
1,736,560 + MPMX19_01653 0.43 -0.9
1,736,560 + MPMX19_01653 0.43 +0.7
1,736,560 + MPMX19_01653 0.43 +0.3
1,736,560 + MPMX19_01653 0.43 +1.6
1,736,560 + MPMX19_01653 0.43 +0.5
1,736,560 + MPMX19_01653 0.43 -2.5
1,736,560 + MPMX19_01653 0.43 -0.4
1,736,560 + MPMX19_01653 0.43 -0.8
1,736,560 + MPMX19_01653 0.43 -1.1
1,736,560 + MPMX19_01653 0.43 +1.1
1,736,560 + MPMX19_01653 0.43 +0.2
1,736,560 + MPMX19_01653 0.43 -0.3
1,736,560 + MPMX19_01653 0.43 +2.1
1,736,803 + MPMX19_01653 0.74 +0.3
1,736,803 + MPMX19_01653 0.74 +1.1
1,736,803 + MPMX19_01653 0.74 -1.7
1,736,803 + MPMX19_01653 0.74 -0.9
1,736,803 + MPMX19_01653 0.74 -1.8
1,736,804 - MPMX19_01653 0.74 +0.1
1,736,937 + -0.9
1,736,937 + -0.9
1,736,937 + +2.3
1,736,937 + -0.2
1,736,937 + -2.2
1,736,938 - +0.3
1,736,938 - -0.5
1,737,030 + +0.5
1,737,030 + +0.1
1,737,030 + -0.8
1,737,030 + -1.4
1,737,030 + +0.8
1,737,030 + +1.7
1,737,030 + -0.6
1,737,030 + +0.5
1,737,030 + +0.1
1,737,030 + -0.6
1,737,030 + +0.1
1,737,030 + +0.3
1,737,030 + -1.6
1,737,030 + +0.2
1,737,030 + -1.1
1,737,030 + +2.1
1,737,030 + -0.5
1,737,030 + +1.5
1,737,126 + MPMX19_01654 0.25 -0.4
1,737,126 + MPMX19_01654 0.25 -0.8
1,737,126 + MPMX19_01654 0.25 -0.4
1,737,126 + MPMX19_01654 0.25 +0.3
1,737,198 + MPMX19_01654 0.40 +1.2
1,737,198 + MPMX19_01654 0.40 -0.4
1,737,368 + MPMX19_01654 0.74 -0.9
1,737,368 + MPMX19_01654 0.74 +1.6
1,737,368 + MPMX19_01654 0.74 -0.8
1,737,368 + MPMX19_01654 0.74 -0.1
1,737,368 + MPMX19_01654 0.74 +0.5
1,737,368 + MPMX19_01654 0.74 +0.4
1,737,368 + MPMX19_01654 0.74 -0.2
1,737,368 + MPMX19_01654 0.74 +0.6
1,737,368 + MPMX19_01654 0.74 -1.3
1,737,368 + MPMX19_01654 0.74 -0.1
1,737,368 + MPMX19_01654 0.74 +0.2
1,737,368 + MPMX19_01654 0.74 -1.0
1,737,368 + MPMX19_01654 0.74 +1.6
1,737,368 + MPMX19_01654 0.74 -1.8
1,737,368 + MPMX19_01654 0.74 +0.5
1,737,368 + MPMX19_01654 0.74 -1.6
1,737,368 + MPMX19_01654 0.74 -0.4
1,737,368 + MPMX19_01654 0.74 -1.1
1,737,368 + MPMX19_01654 0.74 -0.1
1,737,368 + MPMX19_01654 0.74 +0.5
1,737,368 + MPMX19_01654 0.74 -0.6
1,737,368 + MPMX19_01654 0.74 -0.8
1,737,368 + MPMX19_01654 0.74 -1.3
1,737,368 + MPMX19_01654 0.74 +0.3
1,737,368 + MPMX19_01654 0.74 -1.1
1,737,368 + MPMX19_01654 0.74 -0.3
1,737,368 + MPMX19_01654 0.74 -1.9
1,737,368 + MPMX19_01654 0.74 -1.8
1,737,368 + MPMX19_01654 0.74 -1.1
1,737,368 + MPMX19_01654 0.74 -0.4
1,737,368 + MPMX19_01654 0.74 +0.1
1,737,368 + MPMX19_01654 0.74 -0.3
1,737,368 + MPMX19_01654 0.74 +0.1
1,737,368 + MPMX19_01654 0.74 -0.9
1,737,368 + MPMX19_01654 0.74 -0.9
1,737,368 + MPMX19_01654 0.74 -0.8
1,737,368 + MPMX19_01654 0.74 -1.3
1,737,368 + MPMX19_01654 0.74 -0.3
1,737,368 + MPMX19_01654 0.74 -0.4
1,737,368 + MPMX19_01654 0.74 -1.8
1,737,372 + MPMX19_01654 0.75 -0.7
1,737,372 + MPMX19_01654 0.75 -1.3
1,737,372 + MPMX19_01654 0.75 +1.1
1,737,372 + MPMX19_01654 0.75 -0.8
1,737,372 + MPMX19_01654 0.75 +0.1
1,737,372 + MPMX19_01654 0.75 +0.8
1,737,372 + MPMX19_01654 0.75 -1.8
1,737,372 + MPMX19_01654 0.75 +0.1
1,737,372 + MPMX19_01654 0.75 +0.3
1,737,372 + MPMX19_01654 0.75 -0.8
1,737,372 + MPMX19_01654 0.75 +1.1
1,737,372 + MPMX19_01654 0.75 -1.2
1,737,372 + MPMX19_01654 0.75 -1.3
1,737,372 + MPMX19_01654 0.75 -0.5
1,737,372 + MPMX19_01654 0.75 -0.1
1,737,372 + MPMX19_01654 0.75 -1.1
1,737,372 + MPMX19_01654 0.75 -0.8
1,737,372 + MPMX19_01654 0.75 -1.4
1,737,372 + MPMX19_01654 0.75 +0.2
1,737,372 + MPMX19_01654 0.75 -0.2
1,737,372 + MPMX19_01654 0.75 -0.9
1,737,372 + MPMX19_01654 0.75 -0.1
1,737,372 + MPMX19_01654 0.75 -1.4
1,737,372 + MPMX19_01654 0.75 -1.0
1,737,372 + MPMX19_01654 0.75 +0.2
1,737,372 + MPMX19_01654 0.75 -0.8
1,737,372 + MPMX19_01654 0.75 -0.9
1,737,372 + MPMX19_01654 0.75 +0.2
1,737,372 + MPMX19_01654 0.75 -0.8
1,737,372 + MPMX19_01654 0.75 -0.4
1,737,372 + MPMX19_01654 0.75 -0.9
1,737,372 + MPMX19_01654 0.75 -3.1
1,737,372 + MPMX19_01654 0.75 -0.8
1,737,372 + MPMX19_01654 0.75 +0.5
1,737,372 + MPMX19_01654 0.75 -1.9
1,737,372 + MPMX19_01654 0.75 +0.2
1,737,372 + MPMX19_01654 0.75 -0.1
1,737,372 + MPMX19_01654 0.75 -0.5
1,737,561 + -0.9
1,737,561 + -1.1
1,737,561 + -1.3
1,737,591 + -2.1

Or see this region's nucleotide sequence