Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01227

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01225 and MPMX19_01226 are separated by 141 nucleotidesMPMX19_01226 and MPMX19_01227 are separated by 209 nucleotidesMPMX19_01227 and MPMX19_01228 are separated by 76 nucleotidesMPMX19_01228 and MPMX19_01229 are separated by 64 nucleotidesMPMX19_01229 and MPMX19_01230 are separated by 75 nucleotidesMPMX19_01230 and MPMX19_01231 are separated by 155 nucleotides MPMX19_01225: MPMX19_01225 - Phosphopantetheine adenylyltransferase, at 1,277,001 to 1,277,564 _01225 MPMX19_01226: MPMX19_01226 - tRNA-Lys, at 1,277,706 to 1,277,781 _01226 MPMX19_01227: MPMX19_01227 - hypothetical protein, at 1,277,991 to 1,279,682 _01227 MPMX19_01228: MPMX19_01228 - tRNA-Arg, at 1,279,759 to 1,279,835 _01228 MPMX19_01229: MPMX19_01229 - hypothetical protein, at 1,279,900 to 1,280,196 _01229 MPMX19_01230: MPMX19_01230 - tRNA-Pro, at 1,280,272 to 1,280,349 _01230 MPMX19_01231: MPMX19_01231 - hypothetical protein, at 1,280,505 to 1,280,909 _01231 Position (kb) 1277 1278 1279 1280Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1277.798 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.829 kb on + strandat 1277.830 kb on - strandat 1277.830 kb on - strandat 1277.921 kb on + strandat 1277.921 kb on + strandat 1277.921 kb on + strandat 1277.921 kb on + strandat 1277.933 kb on + strandat 1277.933 kb on + strandat 1277.950 kb on + strandat 1277.950 kb on + strandat 1277.951 kb on - strandat 1277.951 kb on - strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.953 kb on + strandat 1277.954 kb on - strandat 1277.954 kb on - strandat 1277.976 kb on + strandat 1277.976 kb on + strandat 1277.977 kb on - strandat 1278.053 kb on - strandat 1278.168 kb on + strand, within MPMX19_01227at 1278.168 kb on + strand, within MPMX19_01227at 1278.168 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.180 kb on + strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.181 kb on - strand, within MPMX19_01227at 1278.217 kb on + strand, within MPMX19_01227at 1278.218 kb on - strand, within MPMX19_01227at 1278.297 kb on + strand, within MPMX19_01227at 1278.297 kb on + strand, within MPMX19_01227at 1278.297 kb on + strand, within MPMX19_01227at 1278.297 kb on + strand, within MPMX19_01227at 1278.298 kb on - strand, within MPMX19_01227at 1278.298 kb on - strand, within MPMX19_01227at 1278.298 kb on - strand, within MPMX19_01227at 1278.298 kb on - strand, within MPMX19_01227at 1278.336 kb on + strand, within MPMX19_01227at 1278.336 kb on + strand, within MPMX19_01227at 1278.337 kb on - strand, within MPMX19_01227at 1278.367 kb on - strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.549 kb on + strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.550 kb on - strand, within MPMX19_01227at 1278.640 kb on + strand, within MPMX19_01227at 1278.640 kb on + strand, within MPMX19_01227at 1278.640 kb on + strand, within MPMX19_01227at 1278.640 kb on + strand, within MPMX19_01227at 1278.641 kb on - strand, within MPMX19_01227at 1278.641 kb on - strand, within MPMX19_01227at 1278.641 kb on - strand, within MPMX19_01227at 1279.838 kb on - strandat 1279.894 kb on - strandat 1279.894 kb on - strandat 1279.894 kb on - strandat 1279.899 kb on - strandat 1279.899 kb on - strandat 1279.899 kb on - strandat 1279.899 kb on - strandat 1279.899 kb on - strandat 1279.899 kb on - strandat 1279.899 kb on - strandat 1279.938 kb on - strand, within MPMX19_01229at 1279.938 kb on - strand, within MPMX19_01229at 1279.938 kb on - strand, within MPMX19_01229at 1279.938 kb on - strand, within MPMX19_01229at 1279.938 kb on - strand, within MPMX19_01229at 1279.938 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.981 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1279.983 kb on - strand, within MPMX19_01229at 1280.118 kb on - strand, within MPMX19_01229at 1280.118 kb on - strand, within MPMX19_01229at 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.181 kb on - strandat 1280.367 kb on - strandat 1280.367 kb on - strandat 1280.367 kb on - strandat 1280.367 kb on - strandat 1280.367 kb on - strandat 1280.367 kb on - strandat 1280.367 kb on - strandat 1280.367 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,277,798 + -0.1
1,277,829 + -0.9
1,277,829 + +0.7
1,277,829 + +0.0
1,277,829 + -0.2
1,277,829 + +1.4
1,277,829 + +0.8
1,277,829 + -0.0
1,277,829 + -0.1
1,277,829 + -0.0
1,277,830 - -0.2
1,277,830 - -1.0
1,277,921 + -0.7
1,277,921 + -0.7
1,277,921 + -0.6
1,277,921 + -1.1
1,277,933 + -1.8
1,277,933 + -1.2
1,277,950 + -0.6
1,277,950 + -0.9
1,277,951 - -1.4
1,277,951 - -0.9
1,277,953 + -1.4
1,277,953 + -0.0
1,277,953 + -0.3
1,277,953 + +0.3
1,277,953 + -0.9
1,277,953 + +0.2
1,277,954 - +1.7
1,277,954 - -1.3
1,277,976 + +0.2
1,277,976 + +0.4
1,277,977 - +1.0
1,278,053 - +0.4
1,278,168 + MPMX19_01227 0.10 -1.2
1,278,168 + MPMX19_01227 0.10 +0.2
1,278,168 + MPMX19_01227 0.10 -1.7
1,278,180 + MPMX19_01227 0.11 -1.5
1,278,180 + MPMX19_01227 0.11 -1.1
1,278,180 + MPMX19_01227 0.11 +0.7
1,278,180 + MPMX19_01227 0.11 +0.1
1,278,180 + MPMX19_01227 0.11 -1.2
1,278,180 + MPMX19_01227 0.11 -0.3
1,278,180 + MPMX19_01227 0.11 -0.9
1,278,180 + MPMX19_01227 0.11 -2.0
1,278,181 - MPMX19_01227 0.11 -1.2
1,278,181 - MPMX19_01227 0.11 -0.6
1,278,181 - MPMX19_01227 0.11 -0.2
1,278,181 - MPMX19_01227 0.11 +1.2
1,278,181 - MPMX19_01227 0.11 +1.6
1,278,181 - MPMX19_01227 0.11 -1.3
1,278,181 - MPMX19_01227 0.11 -0.0
1,278,181 - MPMX19_01227 0.11 -1.3
1,278,181 - MPMX19_01227 0.11 -0.3
1,278,181 - MPMX19_01227 0.11 -0.9
1,278,217 + MPMX19_01227 0.13 +0.2
1,278,218 - MPMX19_01227 0.13 -2.1
1,278,297 + MPMX19_01227 0.18 -2.5
1,278,297 + MPMX19_01227 0.18 -1.2
1,278,297 + MPMX19_01227 0.18 -1.8
1,278,297 + MPMX19_01227 0.18 +0.5
1,278,298 - MPMX19_01227 0.18 +1.0
1,278,298 - MPMX19_01227 0.18 -1.3
1,278,298 - MPMX19_01227 0.18 -0.6
1,278,298 - MPMX19_01227 0.18 -1.2
1,278,336 + MPMX19_01227 0.20 -2.3
1,278,336 + MPMX19_01227 0.20 -1.5
1,278,337 - MPMX19_01227 0.20 +0.4
1,278,367 - MPMX19_01227 0.22 +0.6
1,278,549 + MPMX19_01227 0.33 -0.7
1,278,549 + MPMX19_01227 0.33 -1.4
1,278,549 + MPMX19_01227 0.33 -0.9
1,278,549 + MPMX19_01227 0.33 -0.6
1,278,549 + MPMX19_01227 0.33 -1.9
1,278,549 + MPMX19_01227 0.33 -0.0
1,278,549 + MPMX19_01227 0.33 -2.2
1,278,549 + MPMX19_01227 0.33 -0.3
1,278,549 + MPMX19_01227 0.33 +0.9
1,278,549 + MPMX19_01227 0.33 +0.7
1,278,550 - MPMX19_01227 0.33 -0.6
1,278,550 - MPMX19_01227 0.33 -0.8
1,278,550 - MPMX19_01227 0.33 -0.3
1,278,550 - MPMX19_01227 0.33 -1.0
1,278,550 - MPMX19_01227 0.33 -1.3
1,278,550 - MPMX19_01227 0.33 +0.4
1,278,550 - MPMX19_01227 0.33 +0.4
1,278,550 - MPMX19_01227 0.33 -0.0
1,278,550 - MPMX19_01227 0.33 -0.8
1,278,640 + MPMX19_01227 0.38 -1.3
1,278,640 + MPMX19_01227 0.38 +0.5
1,278,640 + MPMX19_01227 0.38 +2.3
1,278,640 + MPMX19_01227 0.38 -0.0
1,278,641 - MPMX19_01227 0.38 +4.0
1,278,641 - MPMX19_01227 0.38 +0.2
1,278,641 - MPMX19_01227 0.38 +1.0
1,279,838 - -1.1
1,279,894 - +0.4
1,279,894 - -0.0
1,279,894 - -0.0
1,279,899 - -1.7
1,279,899 - +0.3
1,279,899 - +0.4
1,279,899 - +0.5
1,279,899 - -0.1
1,279,899 - -0.5
1,279,899 - -0.1
1,279,938 - MPMX19_01229 0.13 +0.4
1,279,938 - MPMX19_01229 0.13 -0.9
1,279,938 - MPMX19_01229 0.13 -1.4
1,279,938 - MPMX19_01229 0.13 +0.3
1,279,938 - MPMX19_01229 0.13 -0.4
1,279,938 - MPMX19_01229 0.13 +1.4
1,279,981 - MPMX19_01229 0.27 +0.3
1,279,981 - MPMX19_01229 0.27 +0.6
1,279,981 - MPMX19_01229 0.27 -0.0
1,279,981 - MPMX19_01229 0.27 -1.3
1,279,981 - MPMX19_01229 0.27 -1.0
1,279,981 - MPMX19_01229 0.27 -1.5
1,279,981 - MPMX19_01229 0.27 -0.8
1,279,981 - MPMX19_01229 0.27 -0.8
1,279,983 - MPMX19_01229 0.28 -1.6
1,279,983 - MPMX19_01229 0.28 -1.6
1,279,983 - MPMX19_01229 0.28 -0.3
1,279,983 - MPMX19_01229 0.28 +1.0
1,279,983 - MPMX19_01229 0.28 -0.2
1,279,983 - MPMX19_01229 0.28 -1.9
1,279,983 - MPMX19_01229 0.28 -0.6
1,279,983 - MPMX19_01229 0.28 -1.0
1,279,983 - MPMX19_01229 0.28 -0.6
1,279,983 - MPMX19_01229 0.28 -0.3
1,279,983 - MPMX19_01229 0.28 +0.5
1,279,983 - MPMX19_01229 0.28 -0.4
1,279,983 - MPMX19_01229 0.28 -0.2
1,279,983 - MPMX19_01229 0.28 +0.1
1,280,118 - MPMX19_01229 0.73 +1.0
1,280,118 - MPMX19_01229 0.73 -2.5
1,280,181 - -1.6
1,280,181 - +0.4
1,280,181 - +0.5
1,280,181 - +0.8
1,280,181 - +1.0
1,280,181 - -0.6
1,280,181 - -1.2
1,280,181 - -0.8
1,280,181 - -0.5
1,280,181 - -0.6
1,280,181 - +0.4
1,280,181 - -2.7
1,280,181 - +0.8
1,280,181 - -1.0
1,280,181 - +0.8
1,280,181 - -0.3
1,280,367 - -1.3
1,280,367 - -1.3
1,280,367 - -0.6
1,280,367 - -2.0
1,280,367 - +0.6
1,280,367 - +1.3
1,280,367 - -1.7
1,280,367 - +0.5

Or see this region's nucleotide sequence