Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_01168 and MPMX19_01169 overlap by 4 nucleotides MPMX19_01169 and MPMX19_01170 overlap by 1 nucleotides
MPMX19_01168: MPMX19_01168 - Protein-L-isoaspartate O-methyltransferase, at 1,206,791 to 1,207,444
_01168
MPMX19_01169: MPMX19_01169 - 5'-nucleotidase SurE, at 1,207,441 to 1,208,223
_01169
MPMX19_01170: MPMX19_01170 - Serine--tRNA ligase, at 1,208,223 to 1,209,494
_01170
Position (kb)
1207
1208
1209 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1206.866 kb on - strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.007 kb on + strand, within MPMX19_01168 at 1207.008 kb on - strand, within MPMX19_01168 at 1207.008 kb on - strand, within MPMX19_01168 at 1207.008 kb on - strand, within MPMX19_01168 at 1207.008 kb on - strand, within MPMX19_01168 at 1207.008 kb on - strand, within MPMX19_01168 at 1207.008 kb on - strand, within MPMX19_01168 at 1207.008 kb on - strand, within MPMX19_01168 at 1207.009 kb on + strand, within MPMX19_01168 at 1207.009 kb on + strand, within MPMX19_01168 at 1207.009 kb on + strand, within MPMX19_01168 at 1207.010 kb on - strand, within MPMX19_01168 at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.437 kb on + strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.438 kb on - strand at 1207.479 kb on + strand at 1207.479 kb on + strand at 1207.479 kb on + strand at 1207.479 kb on + strand at 1207.480 kb on - strand at 1207.480 kb on - strand at 1207.480 kb on - strand at 1207.480 kb on - strand at 1207.480 kb on - strand at 1207.480 kb on - strand at 1207.496 kb on + strand at 1207.496 kb on + strand at 1207.496 kb on + strand at 1207.497 kb on - strand at 1207.497 kb on - strand at 1207.497 kb on - strand at 1207.497 kb on - strand at 1207.497 kb on - strand at 1207.497 kb on - strand at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.592 kb on + strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.593 kb on - strand, within MPMX19_01169 at 1207.811 kb on + strand, within MPMX19_01169 at 1207.811 kb on + strand, within MPMX19_01169 at 1207.811 kb on + strand, within MPMX19_01169 at 1207.812 kb on - strand, within MPMX19_01169 at 1207.812 kb on - strand, within MPMX19_01169 at 1207.812 kb on - strand, within MPMX19_01169 at 1207.812 kb on - strand, within MPMX19_01169 at 1207.812 kb on - strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.883 kb on + strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1207.884 kb on - strand, within MPMX19_01169 at 1208.146 kb on + strand at 1208.146 kb on + strand at 1208.146 kb on + strand at 1208.146 kb on + strand at 1208.146 kb on + strand at 1208.146 kb on + strand at 1208.146 kb on + strand at 1208.146 kb on + strand at 1208.147 kb on - strand at 1208.147 kb on - strand at 1208.147 kb on - strand at 1208.147 kb on - strand at 1208.147 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 1,206,866 - MPMX19_01168 0.11 -0.5 1,207,007 + MPMX19_01168 0.33 -0.9 1,207,007 + MPMX19_01168 0.33 +0.8 1,207,007 + MPMX19_01168 0.33 -0.5 1,207,007 + MPMX19_01168 0.33 -1.6 1,207,007 + MPMX19_01168 0.33 +1.0 1,207,007 + MPMX19_01168 0.33 -1.0 1,207,007 + MPMX19_01168 0.33 -1.2 1,207,007 + MPMX19_01168 0.33 -1.0 1,207,008 - MPMX19_01168 0.33 -0.4 1,207,008 - MPMX19_01168 0.33 +0.4 1,207,008 - MPMX19_01168 0.33 -1.1 1,207,008 - MPMX19_01168 0.33 -0.4 1,207,008 - MPMX19_01168 0.33 -1.3 1,207,008 - MPMX19_01168 0.33 -0.9 1,207,008 - MPMX19_01168 0.33 +0.1 1,207,009 + MPMX19_01168 0.33 +0.4 1,207,009 + MPMX19_01168 0.33 -1.0 1,207,009 + MPMX19_01168 0.33 -1.6 1,207,010 - MPMX19_01168 0.33 -0.9 1,207,437 + -1.6 1,207,437 + +1.1 1,207,437 + -0.5 1,207,437 + -0.2 1,207,437 + -1.0 1,207,437 + -0.8 1,207,437 + -0.2 1,207,437 + -1.9 1,207,437 + +0.2 1,207,437 + -1.3 1,207,437 + -0.0 1,207,437 + +0.2 1,207,437 + -1.4 1,207,437 + -1.0 1,207,437 + -0.8 1,207,437 + -2.0 1,207,437 + +0.2 1,207,437 + +0.7 1,207,437 + -0.3 1,207,438 - -2.8 1,207,438 - -1.9 1,207,438 - -0.8 1,207,438 - -1.5 1,207,438 - -0.3 1,207,438 - -1.6 1,207,438 - -1.8 1,207,438 - -1.0 1,207,438 - +0.5 1,207,438 - +0.4 1,207,438 - -0.0 1,207,438 - +0.3 1,207,438 - +1.3 1,207,438 - +1.0 1,207,438 - -1.6 1,207,438 - +0.7 1,207,438 - -1.5 1,207,438 - +0.4 1,207,438 - -1.8 1,207,438 - -0.5 1,207,438 - -1.4 1,207,479 + -1.7 1,207,479 + -0.6 1,207,479 + -2.8 1,207,479 + -0.3 1,207,480 - -1.0 1,207,480 - -0.0 1,207,480 - -0.8 1,207,480 - -0.5 1,207,480 - -0.3 1,207,480 - -0.9 1,207,496 + -0.7 1,207,496 + -0.0 1,207,496 + +0.1 1,207,497 - -1.2 1,207,497 - +0.1 1,207,497 - -0.0 1,207,497 - -0.4 1,207,497 - -1.3 1,207,497 - -0.5 1,207,592 + MPMX19_01169 0.19 -0.3 1,207,592 + MPMX19_01169 0.19 -0.4 1,207,592 + MPMX19_01169 0.19 -2.4 1,207,592 + MPMX19_01169 0.19 -0.4 1,207,592 + MPMX19_01169 0.19 +0.2 1,207,592 + MPMX19_01169 0.19 +0.6 1,207,592 + MPMX19_01169 0.19 -1.8 1,207,592 + MPMX19_01169 0.19 -0.8 1,207,592 + MPMX19_01169 0.19 +0.4 1,207,592 + MPMX19_01169 0.19 -0.6 1,207,592 + MPMX19_01169 0.19 -0.8 1,207,592 + MPMX19_01169 0.19 -2.3 1,207,592 + MPMX19_01169 0.19 -1.3 1,207,592 + MPMX19_01169 0.19 +1.1 1,207,592 + MPMX19_01169 0.19 +1.2 1,207,592 + MPMX19_01169 0.19 +0.2 1,207,593 - MPMX19_01169 0.19 -0.1 1,207,593 - MPMX19_01169 0.19 -1.0 1,207,593 - MPMX19_01169 0.19 +1.0 1,207,593 - MPMX19_01169 0.19 -0.3 1,207,593 - MPMX19_01169 0.19 -1.2 1,207,593 - MPMX19_01169 0.19 -0.8 1,207,593 - MPMX19_01169 0.19 -1.3 1,207,593 - MPMX19_01169 0.19 -0.0 1,207,593 - MPMX19_01169 0.19 -0.4 1,207,593 - MPMX19_01169 0.19 -2.1 1,207,593 - MPMX19_01169 0.19 -0.6 1,207,593 - MPMX19_01169 0.19 -0.8 1,207,593 - MPMX19_01169 0.19 -1.1 1,207,593 - MPMX19_01169 0.19 -1.7 1,207,811 + MPMX19_01169 0.47 -1.3 1,207,811 + MPMX19_01169 0.47 -0.5 1,207,811 + MPMX19_01169 0.47 -0.3 1,207,812 - MPMX19_01169 0.47 +1.2 1,207,812 - MPMX19_01169 0.47 -0.3 1,207,812 - MPMX19_01169 0.47 -1.5 1,207,812 - MPMX19_01169 0.47 -1.0 1,207,812 - MPMX19_01169 0.47 -0.3 1,207,883 + MPMX19_01169 0.56 -0.8 1,207,883 + MPMX19_01169 0.56 -0.3 1,207,883 + MPMX19_01169 0.56 +0.6 1,207,883 + MPMX19_01169 0.56 -0.5 1,207,883 + MPMX19_01169 0.56 -0.0 1,207,883 + MPMX19_01169 0.56 +0.2 1,207,883 + MPMX19_01169 0.56 +1.0 1,207,883 + MPMX19_01169 0.56 -1.5 1,207,883 + MPMX19_01169 0.56 -0.3 1,207,883 + MPMX19_01169 0.56 -0.6 1,207,884 - MPMX19_01169 0.57 +0.2 1,207,884 - MPMX19_01169 0.57 -1.1 1,207,884 - MPMX19_01169 0.57 -1.3 1,207,884 - MPMX19_01169 0.57 -2.6 1,207,884 - MPMX19_01169 0.57 -0.7 1,207,884 - MPMX19_01169 0.57 -0.2 1,207,884 - MPMX19_01169 0.57 -0.0 1,207,884 - MPMX19_01169 0.57 -1.0 1,207,884 - MPMX19_01169 0.57 -2.3 1,208,146 + +0.8 1,208,146 + -1.3 1,208,146 + -1.7 1,208,146 + +0.2 1,208,146 + -0.3 1,208,146 + -0.0 1,208,146 + +0.4 1,208,146 + +1.2 1,208,147 - +0.4 1,208,147 - -1.3 1,208,147 - +1.3 1,208,147 - -1.2 1,208,147 - -0.8
Or see this region's nucleotide sequence