Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_01093

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_01092 and MPMX19_01093 are separated by 231 nucleotidesMPMX19_01093 and MPMX19_01094 are separated by 10 nucleotidesMPMX19_01094 and MPMX19_01095 are separated by 2 nucleotides MPMX19_01092: MPMX19_01092 - Ribulose-phosphate 3-epimerase, at 1,128,181 to 1,128,834 _01092 MPMX19_01093: MPMX19_01093 - Molybdate-binding protein ModA, at 1,129,066 to 1,129,875 _01093 MPMX19_01094: MPMX19_01094 - Molybdenum transport system permease protein ModB, at 1,129,886 to 1,130,581 _01094 MPMX19_01095: MPMX19_01095 - Sulfate/thiosulfate import ATP-binding protein CysA, at 1,130,584 to 1,131,705 _01095 Position (kb) 1129 1130Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1128.086 kb on + strandat 1128.086 kb on + strandat 1128.087 kb on - strandat 1128.087 kb on - strandat 1128.087 kb on - strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.177 kb on + strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.178 kb on - strandat 1128.891 kb on - strandat 1128.891 kb on - strandat 1128.891 kb on - strandat 1128.900 kb on + strandat 1128.900 kb on + strandat 1128.900 kb on + strandat 1128.900 kb on + strandat 1128.901 kb on - strandat 1128.901 kb on - strandat 1128.937 kb on - strandat 1129.020 kb on - strandat 1129.034 kb on - strandat 1129.203 kb on + strand, within MPMX19_01093at 1129.203 kb on + strand, within MPMX19_01093at 1129.203 kb on + strand, within MPMX19_01093at 1129.203 kb on + strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.204 kb on - strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.357 kb on + strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.358 kb on - strand, within MPMX19_01093at 1129.543 kb on + strand, within MPMX19_01093at 1129.543 kb on + strand, within MPMX19_01093at 1129.543 kb on + strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.544 kb on - strand, within MPMX19_01093at 1129.669 kb on + strand, within MPMX19_01093at 1129.669 kb on + strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.670 kb on - strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.732 kb on + strand, within MPMX19_01093at 1129.733 kb on - strand, within MPMX19_01093at 1129.733 kb on - strand, within MPMX19_01093at 1129.747 kb on + strand, within MPMX19_01093at 1129.747 kb on + strand, within MPMX19_01093at 1129.748 kb on - strand, within MPMX19_01093at 1129.748 kb on - strand, within MPMX19_01093at 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.804 kb on + strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.805 kb on - strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.873 kb on + strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1129.874 kb on - strandat 1130.003 kb on + strand, within MPMX19_01094at 1130.003 kb on + strand, within MPMX19_01094at 1130.004 kb on - strand, within MPMX19_01094at 1130.078 kb on + strand, within MPMX19_01094at 1130.078 kb on + strand, within MPMX19_01094at 1130.078 kb on + strand, within MPMX19_01094at 1130.078 kb on + strand, within MPMX19_01094at 1130.078 kb on + strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.079 kb on - strand, within MPMX19_01094at 1130.080 kb on + strand, within MPMX19_01094at 1130.080 kb on + strand, within MPMX19_01094at 1130.080 kb on + strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.081 kb on - strand, within MPMX19_01094at 1130.129 kb on + strand, within MPMX19_01094at 1130.129 kb on + strand, within MPMX19_01094at 1130.129 kb on + strand, within MPMX19_01094at 1130.129 kb on + strand, within MPMX19_01094at 1130.129 kb on + strand, within MPMX19_01094at 1130.130 kb on - strand, within MPMX19_01094at 1130.130 kb on - strand, within MPMX19_01094at 1130.130 kb on - strand, within MPMX19_01094at 1130.130 kb on - strand, within MPMX19_01094at 1130.130 kb on - strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.444 kb on + strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.445 kb on - strand, within MPMX19_01094at 1130.746 kb on - strand, within MPMX19_01095at 1130.746 kb on - strand, within MPMX19_01095at 1130.760 kb on + strand, within MPMX19_01095at 1130.821 kb on + strand, within MPMX19_01095at 1130.821 kb on + strand, within MPMX19_01095at 1130.821 kb on + strand, within MPMX19_01095at 1130.821 kb on + strand, within MPMX19_01095at 1130.821 kb on + strand, within MPMX19_01095at 1130.821 kb on + strand, within MPMX19_01095at 1130.821 kb on + strand, within MPMX19_01095at 1130.822 kb on - strand, within MPMX19_01095at 1130.822 kb on - strand, within MPMX19_01095at 1130.822 kb on - strand, within MPMX19_01095

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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1,128,086 + -1.2
1,128,086 + -0.8
1,128,087 - -1.1
1,128,087 - -3.1
1,128,087 - -1.4
1,128,177 + -0.5
1,128,177 + -1.7
1,128,177 + -1.2
1,128,177 + +0.6
1,128,177 + +0.0
1,128,177 + -0.5
1,128,177 + -0.4
1,128,178 - +0.2
1,128,178 - -0.5
1,128,178 - +0.4
1,128,178 - -2.1
1,128,178 - -0.6
1,128,891 - -0.5
1,128,891 - -0.7
1,128,891 - -0.4
1,128,900 + -0.3
1,128,900 + -1.3
1,128,900 + +0.6
1,128,900 + -0.3
1,128,901 - -0.3
1,128,901 - +0.0
1,128,937 - -1.1
1,129,020 - -0.0
1,129,034 - -0.3
1,129,203 + MPMX19_01093 0.17 +1.4
1,129,203 + MPMX19_01093 0.17 -0.8
1,129,203 + MPMX19_01093 0.17 -1.8
1,129,203 + MPMX19_01093 0.17 -0.8
1,129,204 - MPMX19_01093 0.17 -0.3
1,129,204 - MPMX19_01093 0.17 -1.2
1,129,204 - MPMX19_01093 0.17 -1.8
1,129,204 - MPMX19_01093 0.17 +1.4
1,129,204 - MPMX19_01093 0.17 +0.4
1,129,204 - MPMX19_01093 0.17 -0.0
1,129,357 + MPMX19_01093 0.36 -1.3
1,129,357 + MPMX19_01093 0.36 -0.7
1,129,357 + MPMX19_01093 0.36 -0.7
1,129,357 + MPMX19_01093 0.36 +0.3
1,129,357 + MPMX19_01093 0.36 +0.8
1,129,357 + MPMX19_01093 0.36 -0.2
1,129,357 + MPMX19_01093 0.36 -0.4
1,129,357 + MPMX19_01093 0.36 -1.0
1,129,357 + MPMX19_01093 0.36 +1.2
1,129,358 - MPMX19_01093 0.36 -1.0
1,129,358 - MPMX19_01093 0.36 -1.7
1,129,358 - MPMX19_01093 0.36 +0.1
1,129,358 - MPMX19_01093 0.36 +0.3
1,129,358 - MPMX19_01093 0.36 -1.6
1,129,358 - MPMX19_01093 0.36 -0.7
1,129,543 + MPMX19_01093 0.59 -1.0
1,129,543 + MPMX19_01093 0.59 -1.8
1,129,543 + MPMX19_01093 0.59 +1.0
1,129,544 - MPMX19_01093 0.59 -1.0
1,129,544 - MPMX19_01093 0.59 -1.3
1,129,544 - MPMX19_01093 0.59 -0.0
1,129,544 - MPMX19_01093 0.59 -1.7
1,129,669 + MPMX19_01093 0.74 -0.6
1,129,669 + MPMX19_01093 0.74 -0.3
1,129,670 - MPMX19_01093 0.75 +0.2
1,129,670 - MPMX19_01093 0.75 -1.3
1,129,670 - MPMX19_01093 0.75 +0.7
1,129,670 - MPMX19_01093 0.75 -1.2
1,129,732 + MPMX19_01093 0.82 -0.3
1,129,732 + MPMX19_01093 0.82 -0.7
1,129,732 + MPMX19_01093 0.82 -0.2
1,129,732 + MPMX19_01093 0.82 +0.2
1,129,732 + MPMX19_01093 0.82 -1.9
1,129,733 - MPMX19_01093 0.82 -0.2
1,129,733 - MPMX19_01093 0.82 +0.5
1,129,747 + MPMX19_01093 0.84 -0.6
1,129,747 + MPMX19_01093 0.84 -2.5
1,129,748 - MPMX19_01093 0.84 -0.6
1,129,748 - MPMX19_01093 0.84 -1.3
1,129,804 + -0.8
1,129,804 + +0.6
1,129,804 + -1.1
1,129,804 + -0.2
1,129,804 + +0.1
1,129,804 + -0.0
1,129,804 + -0.0
1,129,805 - -1.5
1,129,805 - -0.6
1,129,805 - -1.1
1,129,805 - -0.0
1,129,805 - -1.6
1,129,805 - -0.8
1,129,805 - -0.6
1,129,805 - -0.7
1,129,805 - -2.0
1,129,873 + +0.2
1,129,873 + -0.5
1,129,873 + +0.6
1,129,873 + -1.3
1,129,873 + -2.3
1,129,873 + -0.8
1,129,873 + -2.5
1,129,873 + -0.6
1,129,873 + -0.7
1,129,873 + +1.6
1,129,873 + +0.9
1,129,873 + -0.3
1,129,873 + -1.6
1,129,873 + +0.4
1,129,873 + -1.0
1,129,874 - -0.2
1,129,874 - -0.8
1,129,874 - -0.2
1,129,874 - -0.7
1,129,874 - -0.2
1,129,874 - -1.3
1,129,874 - +0.8
1,129,874 - -1.6
1,129,874 - -1.6
1,129,874 - +0.7
1,129,874 - +0.3
1,129,874 - -0.3
1,130,003 + MPMX19_01094 0.17 -1.4
1,130,003 + MPMX19_01094 0.17 -0.8
1,130,004 - MPMX19_01094 0.17 +0.7
1,130,078 + MPMX19_01094 0.28 +0.2
1,130,078 + MPMX19_01094 0.28 -0.1
1,130,078 + MPMX19_01094 0.28 -0.7
1,130,078 + MPMX19_01094 0.28 -0.6
1,130,078 + MPMX19_01094 0.28 -0.6
1,130,079 - MPMX19_01094 0.28 -0.2
1,130,079 - MPMX19_01094 0.28 -1.1
1,130,079 - MPMX19_01094 0.28 -0.6
1,130,079 - MPMX19_01094 0.28 +0.7
1,130,079 - MPMX19_01094 0.28 -1.3
1,130,079 - MPMX19_01094 0.28 -2.1
1,130,079 - MPMX19_01094 0.28 -0.8
1,130,079 - MPMX19_01094 0.28 +2.0
1,130,079 - MPMX19_01094 0.28 -0.8
1,130,080 + MPMX19_01094 0.28 +1.2
1,130,080 + MPMX19_01094 0.28 -0.6
1,130,080 + MPMX19_01094 0.28 -0.7
1,130,081 - MPMX19_01094 0.28 +0.8
1,130,081 - MPMX19_01094 0.28 -0.6
1,130,081 - MPMX19_01094 0.28 +1.5
1,130,081 - MPMX19_01094 0.28 -0.4
1,130,081 - MPMX19_01094 0.28 -1.3
1,130,081 - MPMX19_01094 0.28 -1.6
1,130,081 - MPMX19_01094 0.28 +1.3
1,130,081 - MPMX19_01094 0.28 +0.2
1,130,081 - MPMX19_01094 0.28 +1.4
1,130,081 - MPMX19_01094 0.28 -1.6
1,130,129 + MPMX19_01094 0.35 -0.7
1,130,129 + MPMX19_01094 0.35 -0.6
1,130,129 + MPMX19_01094 0.35 -0.0
1,130,129 + MPMX19_01094 0.35 +2.3
1,130,129 + MPMX19_01094 0.35 -1.3
1,130,130 - MPMX19_01094 0.35 -0.5
1,130,130 - MPMX19_01094 0.35 -1.6
1,130,130 - MPMX19_01094 0.35 -1.6
1,130,130 - MPMX19_01094 0.35 -1.3
1,130,130 - MPMX19_01094 0.35 -0.2
1,130,444 + MPMX19_01094 0.80 -0.3
1,130,444 + MPMX19_01094 0.80 -0.0
1,130,444 + MPMX19_01094 0.80 -0.0
1,130,444 + MPMX19_01094 0.80 -0.2
1,130,444 + MPMX19_01094 0.80 -1.0
1,130,444 + MPMX19_01094 0.80 +0.8
1,130,444 + MPMX19_01094 0.80 -0.2
1,130,444 + MPMX19_01094 0.80 +0.8
1,130,444 + MPMX19_01094 0.80 -1.1
1,130,444 + MPMX19_01094 0.80 -0.8
1,130,444 + MPMX19_01094 0.80 -0.7
1,130,445 - MPMX19_01094 0.80 -1.0
1,130,445 - MPMX19_01094 0.80 +1.1
1,130,445 - MPMX19_01094 0.80 +0.8
1,130,445 - MPMX19_01094 0.80 -1.3
1,130,445 - MPMX19_01094 0.80 -1.6
1,130,445 - MPMX19_01094 0.80 -1.5
1,130,445 - MPMX19_01094 0.80 +0.4
1,130,445 - MPMX19_01094 0.80 -0.1
1,130,746 - MPMX19_01095 0.14 +0.2
1,130,746 - MPMX19_01095 0.14 -2.1
1,130,760 + MPMX19_01095 0.16 -1.5
1,130,821 + MPMX19_01095 0.21 -1.0
1,130,821 + MPMX19_01095 0.21 -0.8
1,130,821 + MPMX19_01095 0.21 -0.2
1,130,821 + MPMX19_01095 0.21 +0.6
1,130,821 + MPMX19_01095 0.21 +0.3
1,130,821 + MPMX19_01095 0.21 -2.5
1,130,821 + MPMX19_01095 0.21 -0.5
1,130,822 - MPMX19_01095 0.21 -1.3
1,130,822 - MPMX19_01095 0.21 -1.4
1,130,822 - MPMX19_01095 0.21 +0.7

Or see this region's nucleotide sequence