Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00953

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00951 and MPMX19_00952 overlap by 49 nucleotidesMPMX19_00952 and MPMX19_00953 are separated by 79 nucleotidesMPMX19_00953 and MPMX19_00954 are separated by 213 nucleotides MPMX19_00951: MPMX19_00951 - ATP-dependent DNA helicase RecG, at 990,342 to 992,489 _00951 MPMX19_00952: MPMX19_00952 - hypothetical protein, at 992,441 to 993,295 _00952 MPMX19_00953: MPMX19_00953 - hypothetical protein, at 993,375 to 993,776 _00953 MPMX19_00954: MPMX19_00954 - Cyclic AMP receptor protein, at 993,990 to 994,724 _00954 Position (kb) 993 994Strain fitness (log2 ratio) -2 -1 0 1 2at 992.443 kb on - strandat 992.649 kb on + strand, within MPMX19_00952at 992.650 kb on - strand, within MPMX19_00952at 992.650 kb on - strand, within MPMX19_00952at 992.781 kb on + strand, within MPMX19_00952at 992.782 kb on - strand, within MPMX19_00952at 992.859 kb on + strand, within MPMX19_00952at 992.859 kb on + strand, within MPMX19_00952at 992.859 kb on + strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.860 kb on - strand, within MPMX19_00952at 992.928 kb on + strand, within MPMX19_00952at 992.928 kb on + strand, within MPMX19_00952at 992.928 kb on + strand, within MPMX19_00952at 992.928 kb on + strand, within MPMX19_00952at 992.928 kb on + strand, within MPMX19_00952at 992.928 kb on + strand, within MPMX19_00952at 992.928 kb on + strand, within MPMX19_00952at 992.929 kb on - strand, within MPMX19_00952at 992.929 kb on - strand, within MPMX19_00952at 992.929 kb on - strand, within MPMX19_00952at 992.929 kb on - strand, within MPMX19_00952at 993.009 kb on + strand, within MPMX19_00952at 993.009 kb on + strand, within MPMX19_00952at 993.009 kb on + strand, within MPMX19_00952at 993.009 kb on + strand, within MPMX19_00952at 993.009 kb on + strand, within MPMX19_00952at 993.010 kb on - strand, within MPMX19_00952at 993.010 kb on - strand, within MPMX19_00952at 993.010 kb on - strand, within MPMX19_00952at 993.010 kb on - strand, within MPMX19_00952at 993.024 kb on + strand, within MPMX19_00952at 993.024 kb on + strand, within MPMX19_00952at 993.024 kb on + strand, within MPMX19_00952at 993.024 kb on + strand, within MPMX19_00952at 993.024 kb on + strand, within MPMX19_00952at 993.025 kb on - strand, within MPMX19_00952at 993.025 kb on - strand, within MPMX19_00952at 993.025 kb on - strand, within MPMX19_00952at 993.025 kb on - strand, within MPMX19_00952at 993.050 kb on - strand, within MPMX19_00952at 993.050 kb on - strand, within MPMX19_00952at 993.051 kb on + strand, within MPMX19_00952at 993.051 kb on + strand, within MPMX19_00952at 993.051 kb on + strand, within MPMX19_00952at 993.051 kb on + strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.052 kb on - strand, within MPMX19_00952at 993.086 kb on - strand, within MPMX19_00952at 993.086 kb on - strand, within MPMX19_00952at 993.086 kb on - strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.087 kb on + strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.088 kb on - strand, within MPMX19_00952at 993.135 kb on + strand, within MPMX19_00952at 993.135 kb on + strand, within MPMX19_00952at 993.135 kb on + strand, within MPMX19_00952at 993.136 kb on - strand, within MPMX19_00952at 993.136 kb on - strand, within MPMX19_00952at 993.136 kb on - strand, within MPMX19_00952at 993.197 kb on - strand, within MPMX19_00952at 993.311 kb on + strandat 993.311 kb on + strandat 993.311 kb on + strandat 993.312 kb on - strandat 993.312 kb on - strandat 993.347 kb on + strandat 993.499 kb on + strand, within MPMX19_00953at 993.499 kb on + strand, within MPMX19_00953at 993.499 kb on + strand, within MPMX19_00953at 993.499 kb on + strand, within MPMX19_00953at 993.499 kb on + strand, within MPMX19_00953at 993.499 kb on + strand, within MPMX19_00953at 993.499 kb on + strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.500 kb on - strand, within MPMX19_00953at 993.586 kb on + strand, within MPMX19_00953at 993.586 kb on + strand, within MPMX19_00953at 993.586 kb on + strand, within MPMX19_00953at 993.586 kb on + strand, within MPMX19_00953at 993.587 kb on - strand, within MPMX19_00953at 993.587 kb on - strand, within MPMX19_00953at 993.879 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.932 kb on + strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.933 kb on - strandat 993.934 kb on - strandat 994.744 kb on + strandat 994.744 kb on + strandat 994.744 kb on + strandat 994.744 kb on + strandat 994.744 kb on + strandat 994.744 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
992,443 - -0.8
992,649 + MPMX19_00952 0.24 +0.1
992,650 - MPMX19_00952 0.24 +0.4
992,650 - MPMX19_00952 0.24 -0.6
992,781 + MPMX19_00952 0.40 -0.0
992,782 - MPMX19_00952 0.40 -1.6
992,859 + MPMX19_00952 0.49 -0.8
992,859 + MPMX19_00952 0.49 -0.5
992,859 + MPMX19_00952 0.49 -0.3
992,860 - MPMX19_00952 0.49 +0.7
992,860 - MPMX19_00952 0.49 +1.0
992,860 - MPMX19_00952 0.49 +1.0
992,860 - MPMX19_00952 0.49 +0.8
992,860 - MPMX19_00952 0.49 -0.7
992,860 - MPMX19_00952 0.49 -1.6
992,860 - MPMX19_00952 0.49 -2.6
992,860 - MPMX19_00952 0.49 +1.3
992,860 - MPMX19_00952 0.49 -0.3
992,860 - MPMX19_00952 0.49 -0.6
992,928 + MPMX19_00952 0.57 -0.0
992,928 + MPMX19_00952 0.57 -1.3
992,928 + MPMX19_00952 0.57 +1.4
992,928 + MPMX19_00952 0.57 +0.2
992,928 + MPMX19_00952 0.57 -1.6
992,928 + MPMX19_00952 0.57 +0.5
992,928 + MPMX19_00952 0.57 -0.6
992,929 - MPMX19_00952 0.57 -0.6
992,929 - MPMX19_00952 0.57 +0.8
992,929 - MPMX19_00952 0.57 +0.2
992,929 - MPMX19_00952 0.57 -1.3
993,009 + MPMX19_00952 0.66 +1.6
993,009 + MPMX19_00952 0.66 +0.7
993,009 + MPMX19_00952 0.66 -0.0
993,009 + MPMX19_00952 0.66 -0.0
993,009 + MPMX19_00952 0.66 -1.0
993,010 - MPMX19_00952 0.67 -0.3
993,010 - MPMX19_00952 0.67 -1.0
993,010 - MPMX19_00952 0.67 +0.4
993,010 - MPMX19_00952 0.67 -1.0
993,024 + MPMX19_00952 0.68 +0.4
993,024 + MPMX19_00952 0.68 -0.5
993,024 + MPMX19_00952 0.68 -0.3
993,024 + MPMX19_00952 0.68 +1.4
993,024 + MPMX19_00952 0.68 -0.2
993,025 - MPMX19_00952 0.68 -1.8
993,025 - MPMX19_00952 0.68 +0.6
993,025 - MPMX19_00952 0.68 -0.5
993,025 - MPMX19_00952 0.68 -1.5
993,050 - MPMX19_00952 0.71 -0.0
993,050 - MPMX19_00952 0.71 +0.4
993,051 + MPMX19_00952 0.71 -0.8
993,051 + MPMX19_00952 0.71 -1.6
993,051 + MPMX19_00952 0.71 +0.2
993,051 + MPMX19_00952 0.71 -1.7
993,052 - MPMX19_00952 0.71 -0.2
993,052 - MPMX19_00952 0.71 -1.3
993,052 - MPMX19_00952 0.71 -0.3
993,052 - MPMX19_00952 0.71 +1.0
993,052 - MPMX19_00952 0.71 +0.7
993,052 - MPMX19_00952 0.71 -1.0
993,052 - MPMX19_00952 0.71 -0.0
993,052 - MPMX19_00952 0.71 -2.2
993,086 - MPMX19_00952 0.75 +0.7
993,086 - MPMX19_00952 0.75 -0.3
993,086 - MPMX19_00952 0.75 -0.8
993,087 + MPMX19_00952 0.76 -1.0
993,087 + MPMX19_00952 0.76 -1.3
993,087 + MPMX19_00952 0.76 -1.0
993,087 + MPMX19_00952 0.76 +0.1
993,087 + MPMX19_00952 0.76 -0.3
993,087 + MPMX19_00952 0.76 -0.6
993,087 + MPMX19_00952 0.76 +0.8
993,087 + MPMX19_00952 0.76 -1.7
993,087 + MPMX19_00952 0.76 +0.2
993,087 + MPMX19_00952 0.76 +0.2
993,087 + MPMX19_00952 0.76 -0.8
993,087 + MPMX19_00952 0.76 +0.4
993,087 + MPMX19_00952 0.76 +0.4
993,087 + MPMX19_00952 0.76 -1.5
993,087 + MPMX19_00952 0.76 -0.2
993,087 + MPMX19_00952 0.76 +0.4
993,087 + MPMX19_00952 0.76 -1.2
993,087 + MPMX19_00952 0.76 -0.6
993,088 - MPMX19_00952 0.76 -0.8
993,088 - MPMX19_00952 0.76 -0.6
993,088 - MPMX19_00952 0.76 +0.2
993,088 - MPMX19_00952 0.76 -0.2
993,088 - MPMX19_00952 0.76 -0.9
993,088 - MPMX19_00952 0.76 -1.0
993,088 - MPMX19_00952 0.76 -0.7
993,088 - MPMX19_00952 0.76 +1.4
993,088 - MPMX19_00952 0.76 +0.4
993,088 - MPMX19_00952 0.76 -2.3
993,135 + MPMX19_00952 0.81 -0.8
993,135 + MPMX19_00952 0.81 +1.0
993,135 + MPMX19_00952 0.81 -1.1
993,136 - MPMX19_00952 0.81 -0.3
993,136 - MPMX19_00952 0.81 +1.2
993,136 - MPMX19_00952 0.81 +2.4
993,197 - MPMX19_00952 0.88 -2.0
993,311 + +0.2
993,311 + +0.4
993,311 + +0.3
993,312 - -0.0
993,312 - +0.4
993,347 + -1.6
993,499 + MPMX19_00953 0.31 -1.0
993,499 + MPMX19_00953 0.31 +0.4
993,499 + MPMX19_00953 0.31 +0.2
993,499 + MPMX19_00953 0.31 -2.3
993,499 + MPMX19_00953 0.31 -1.2
993,499 + MPMX19_00953 0.31 +0.1
993,499 + MPMX19_00953 0.31 +0.4
993,500 - MPMX19_00953 0.31 +0.7
993,500 - MPMX19_00953 0.31 -0.8
993,500 - MPMX19_00953 0.31 -0.9
993,500 - MPMX19_00953 0.31 -0.5
993,500 - MPMX19_00953 0.31 +0.2
993,500 - MPMX19_00953 0.31 -1.3
993,500 - MPMX19_00953 0.31 -1.0
993,500 - MPMX19_00953 0.31 -0.8
993,500 - MPMX19_00953 0.31 -1.8
993,500 - MPMX19_00953 0.31 -0.3
993,586 + MPMX19_00953 0.52 -0.3
993,586 + MPMX19_00953 0.52 -0.2
993,586 + MPMX19_00953 0.52 -1.6
993,586 + MPMX19_00953 0.52 -0.2
993,587 - MPMX19_00953 0.53 -0.6
993,587 - MPMX19_00953 0.53 -1.7
993,879 + -0.1
993,932 + +0.1
993,932 + -0.5
993,932 + -1.3
993,932 + -0.4
993,932 + +0.7
993,932 + -0.2
993,932 + -0.5
993,932 + -0.9
993,932 + -0.0
993,932 + -0.0
993,932 + -0.0
993,932 + -0.1
993,932 + -0.3
993,932 + -1.8
993,932 + -0.4
993,932 + +0.2
993,932 + -0.9
993,932 + -0.8
993,932 + -2.2
993,932 + -1.9
993,932 + -0.7
993,932 + -1.3
993,932 + -2.3
993,932 + -1.3
993,933 - -2.1
993,933 - -1.0
993,933 - -0.3
993,933 - +1.9
993,933 - -1.6
993,933 - +0.4
993,933 - -0.1
993,933 - -0.9
993,933 - -0.6
993,933 - -2.7
993,933 - -0.8
993,933 - +0.1
993,933 - -1.0
993,933 - +0.7
993,933 - -0.0
993,933 - -0.0
993,933 - +0.2
993,933 - +0.8
993,933 - -1.3
993,933 - -1.9
993,933 - +1.3
993,933 - +0.0
993,933 - -0.9
993,933 - -0.6
993,933 - -1.0
993,933 - -1.3
993,933 - -1.5
993,933 - -0.4
993,933 - +0.2
993,934 - -0.5
994,744 + +0.4
994,744 + -0.3
994,744 + -0.6
994,744 + +1.0
994,744 + -0.6
994,744 + -1.0

Or see this region's nucleotide sequence