Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00948 and MPMX19_00949 are separated by 56 nucleotides MPMX19_00949 and MPMX19_00950 are separated by 52 nucleotides
MPMX19_00948: MPMX19_00948 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 985,410 to 986,489
_00948
MPMX19_00949: MPMX19_00949 - Protein-glutamate methylesterase/protein-glutamine glutaminase, at 986,546 to 986,968
_00949
MPMX19_00950: MPMX19_00950 - hypothetical protein, at 987,021 to 989,990
_00950
Position (kb) 986
987 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.027 kb on + strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.028 kb on - strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.223 kb on + strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.224 kb on - strand, within MPMX19_00948 at 986.444 kb on + strand at 986.444 kb on + strand at 986.444 kb on + strand at 986.445 kb on - strand at 986.445 kb on - strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.530 kb on + strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.531 kb on - strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.541 kb on + strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 986.542 kb on - strand at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.454 kb on + strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.455 kb on - strand, within MPMX19_00950 at 987.746 kb on + strand, within MPMX19_00950 at 987.747 kb on - strand, within MPMX19_00950 at 987.747 kb on - strand, within MPMX19_00950 at 987.747 kb on - strand, within MPMX19_00950
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 986,027 + MPMX19_00948 0.57 -1.1 986,027 + MPMX19_00948 0.57 -0.2 986,027 + MPMX19_00948 0.57 -0.3 986,027 + MPMX19_00948 0.57 -2.1 986,027 + MPMX19_00948 0.57 +0.7 986,027 + MPMX19_00948 0.57 -0.2 986,027 + MPMX19_00948 0.57 -2.1 986,027 + MPMX19_00948 0.57 -0.0 986,027 + MPMX19_00948 0.57 -0.7 986,027 + MPMX19_00948 0.57 -1.2 986,027 + MPMX19_00948 0.57 -0.2 986,027 + MPMX19_00948 0.57 -0.3 986,027 + MPMX19_00948 0.57 -2.1 986,027 + MPMX19_00948 0.57 -0.2 986,027 + MPMX19_00948 0.57 -0.4 986,028 - MPMX19_00948 0.57 -0.8 986,028 - MPMX19_00948 0.57 +0.9 986,028 - MPMX19_00948 0.57 -0.3 986,028 - MPMX19_00948 0.57 -1.0 986,028 - MPMX19_00948 0.57 -0.9 986,028 - MPMX19_00948 0.57 -0.5 986,028 - MPMX19_00948 0.57 -0.5 986,028 - MPMX19_00948 0.57 +0.4 986,028 - MPMX19_00948 0.57 -0.0 986,028 - MPMX19_00948 0.57 -0.3 986,028 - MPMX19_00948 0.57 -1.0 986,028 - MPMX19_00948 0.57 -1.6 986,028 - MPMX19_00948 0.57 -0.7 986,223 + MPMX19_00948 0.75 -0.8 986,223 + MPMX19_00948 0.75 -0.6 986,223 + MPMX19_00948 0.75 -1.4 986,223 + MPMX19_00948 0.75 -1.7 986,223 + MPMX19_00948 0.75 -0.0 986,223 + MPMX19_00948 0.75 -0.6 986,223 + MPMX19_00948 0.75 -0.3 986,223 + MPMX19_00948 0.75 +0.2 986,223 + MPMX19_00948 0.75 -0.2 986,223 + MPMX19_00948 0.75 -0.3 986,223 + MPMX19_00948 0.75 -1.4 986,223 + MPMX19_00948 0.75 -0.0 986,223 + MPMX19_00948 0.75 +0.2 986,223 + MPMX19_00948 0.75 -1.5 986,223 + MPMX19_00948 0.75 -1.7 986,223 + MPMX19_00948 0.75 -0.1 986,223 + MPMX19_00948 0.75 +1.2 986,223 + MPMX19_00948 0.75 -0.5 986,223 + MPMX19_00948 0.75 +0.1 986,223 + MPMX19_00948 0.75 -1.1 986,223 + MPMX19_00948 0.75 -0.2 986,223 + MPMX19_00948 0.75 -1.7 986,223 + MPMX19_00948 0.75 -0.9 986,223 + MPMX19_00948 0.75 -1.1 986,223 + MPMX19_00948 0.75 -0.4 986,223 + MPMX19_00948 0.75 -0.8 986,223 + MPMX19_00948 0.75 +0.7 986,223 + MPMX19_00948 0.75 +0.2 986,223 + MPMX19_00948 0.75 -1.1 986,223 + MPMX19_00948 0.75 +0.7 986,223 + MPMX19_00948 0.75 -0.1 986,223 + MPMX19_00948 0.75 +0.7 986,223 + MPMX19_00948 0.75 +2.2 986,223 + MPMX19_00948 0.75 -0.8 986,223 + MPMX19_00948 0.75 -1.1 986,223 + MPMX19_00948 0.75 +0.5 986,223 + MPMX19_00948 0.75 +0.2 986,223 + MPMX19_00948 0.75 -0.1 986,223 + MPMX19_00948 0.75 -0.3 986,223 + MPMX19_00948 0.75 -1.5 986,224 - MPMX19_00948 0.75 -0.2 986,224 - MPMX19_00948 0.75 -0.5 986,224 - MPMX19_00948 0.75 -0.4 986,224 - MPMX19_00948 0.75 -1.3 986,224 - MPMX19_00948 0.75 -1.3 986,224 - MPMX19_00948 0.75 -2.4 986,224 - MPMX19_00948 0.75 +1.5 986,224 - MPMX19_00948 0.75 -0.5 986,224 - MPMX19_00948 0.75 +0.6 986,224 - MPMX19_00948 0.75 -0.1 986,224 - MPMX19_00948 0.75 -1.3 986,224 - MPMX19_00948 0.75 -0.3 986,224 - MPMX19_00948 0.75 -1.1 986,224 - MPMX19_00948 0.75 -0.5 986,224 - MPMX19_00948 0.75 -1.7 986,224 - MPMX19_00948 0.75 -1.5 986,224 - MPMX19_00948 0.75 +0.2 986,224 - MPMX19_00948 0.75 -1.3 986,224 - MPMX19_00948 0.75 -0.2 986,224 - MPMX19_00948 0.75 -0.8 986,224 - MPMX19_00948 0.75 +0.7 986,224 - MPMX19_00948 0.75 -0.2 986,224 - MPMX19_00948 0.75 -0.3 986,224 - MPMX19_00948 0.75 -1.3 986,224 - MPMX19_00948 0.75 -0.6 986,224 - MPMX19_00948 0.75 +0.2 986,224 - MPMX19_00948 0.75 -0.1 986,224 - MPMX19_00948 0.75 +0.8 986,224 - MPMX19_00948 0.75 +1.6 986,224 - MPMX19_00948 0.75 -2.4 986,224 - MPMX19_00948 0.75 +1.6 986,224 - MPMX19_00948 0.75 -0.3 986,224 - MPMX19_00948 0.75 -1.1 986,224 - MPMX19_00948 0.75 -0.8 986,224 - MPMX19_00948 0.75 -1.1 986,224 - MPMX19_00948 0.75 -0.8 986,224 - MPMX19_00948 0.75 -1.6 986,224 - MPMX19_00948 0.75 -0.7 986,224 - MPMX19_00948 0.75 -1.3 986,224 - MPMX19_00948 0.75 -1.0 986,224 - MPMX19_00948 0.75 -1.2 986,224 - MPMX19_00948 0.75 -2.0 986,224 - MPMX19_00948 0.75 -1.2 986,224 - MPMX19_00948 0.75 -1.5 986,224 - MPMX19_00948 0.75 -1.5 986,224 - MPMX19_00948 0.75 -1.7 986,224 - MPMX19_00948 0.75 -1.8 986,444 + -0.7 986,444 + +1.0 986,444 + -2.3 986,445 - +0.2 986,445 - +0.7 986,530 + -1.4 986,530 + +0.7 986,530 + -1.3 986,530 + -1.0 986,530 + +0.2 986,530 + +0.3 986,530 + -1.5 986,530 + +0.4 986,530 + -0.9 986,530 + -1.1 986,530 + -0.0 986,530 + -0.7 986,530 + +1.0 986,530 + -0.8 986,530 + -0.3 986,530 + +0.6 986,530 + +0.5 986,530 + -0.8 986,530 + -0.0 986,530 + -1.2 986,530 + -0.0 986,530 + -0.2 986,530 + +0.7 986,530 + -1.7 986,530 + -0.0 986,530 + -0.3 986,530 + -0.8 986,530 + +0.7 986,530 + -0.3 986,530 + +0.8 986,530 + +0.7 986,530 + +1.2 986,530 + +0.2 986,530 + +0.3 986,530 + -0.9 986,530 + -0.7 986,530 + +0.5 986,530 + -0.9 986,530 + +0.1 986,531 - +1.0 986,531 - +0.6 986,531 - -0.1 986,531 - +0.1 986,531 - +0.4 986,531 - -0.1 986,531 - -0.7 986,531 - -0.9 986,531 - +1.0 986,531 - -1.2 986,531 - -0.9 986,531 - -2.8 986,531 - -1.5 986,531 - -1.8 986,531 - +0.0 986,531 - +0.4 986,531 - -0.3 986,531 - +1.2 986,531 - -0.2 986,531 - -1.7 986,531 - +0.8 986,531 - -1.1 986,531 - -0.0 986,531 - -1.8 986,531 - -0.8 986,531 - -0.0 986,531 - -0.1 986,531 - -1.0 986,531 - -1.3 986,531 - -1.8 986,531 - -1.2 986,531 - +0.8 986,531 - -0.0 986,531 - -0.2 986,531 - -0.6 986,531 - +1.6 986,531 - +0.5 986,531 - -0.1 986,531 - -1.7 986,531 - -2.2 986,541 + -1.6 986,541 + -0.0 986,541 + -1.7 986,541 + +0.2 986,541 + -1.3 986,541 + -1.5 986,541 + +0.5 986,541 + -2.1 986,541 + +0.2 986,541 + -1.7 986,542 - -0.7 986,542 - -1.0 986,542 - -0.8 986,542 - -1.2 986,542 - +0.4 986,542 - -0.3 986,542 - +0.3 986,542 - -1.6 986,542 - -0.3 986,542 - -0.1 986,542 - -0.0 986,542 - -1.0 986,542 - -1.4 986,542 - +1.4 987,454 + MPMX19_00950 0.15 -0.6 987,454 + MPMX19_00950 0.15 -1.1 987,454 + MPMX19_00950 0.15 -2.1 987,454 + MPMX19_00950 0.15 +1.0 987,454 + MPMX19_00950 0.15 -0.6 987,454 + MPMX19_00950 0.15 -1.6 987,454 + MPMX19_00950 0.15 -0.6 987,454 + MPMX19_00950 0.15 -1.3 987,454 + MPMX19_00950 0.15 -0.1 987,454 + MPMX19_00950 0.15 -0.2 987,455 - MPMX19_00950 0.15 -1.9 987,455 - MPMX19_00950 0.15 -0.7 987,455 - MPMX19_00950 0.15 -0.9 987,455 - MPMX19_00950 0.15 -2.8 987,455 - MPMX19_00950 0.15 -0.5 987,455 - MPMX19_00950 0.15 -1.2 987,455 - MPMX19_00950 0.15 +0.4 987,455 - MPMX19_00950 0.15 +0.1 987,455 - MPMX19_00950 0.15 -0.8 987,455 - MPMX19_00950 0.15 -0.0 987,455 - MPMX19_00950 0.15 -2.0 987,746 + MPMX19_00950 0.24 -0.4 987,747 - MPMX19_00950 0.24 -0.2 987,747 - MPMX19_00950 0.24 -0.1 987,747 - MPMX19_00950 0.24 -0.3
Or see this region's nucleotide sequence