Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00946

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00945 and MPMX19_00946 overlap by 4 nucleotidesMPMX19_00946 and MPMX19_00947 overlap by 4 nucleotides MPMX19_00945: MPMX19_00945 - hypothetical protein, at 981,810 to 983,051 _00945 MPMX19_00946: MPMX19_00946 - Chemotaxis protein methyltransferase, at 983,048 to 983,974 _00946 MPMX19_00947: MPMX19_00947 - hypothetical protein, at 983,971 to 985,413 _00947 Position (kb) 983 984Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 982.251 kb on + strand, within MPMX19_00945at 982.251 kb on + strand, within MPMX19_00945at 982.251 kb on + strand, within MPMX19_00945at 982.251 kb on + strand, within MPMX19_00945at 982.252 kb on - strand, within MPMX19_00945at 982.252 kb on - strand, within MPMX19_00945at 982.252 kb on - strand, within MPMX19_00945at 982.901 kb on + strand, within MPMX19_00945at 982.901 kb on + strand, within MPMX19_00945at 982.901 kb on + strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 982.902 kb on - strand, within MPMX19_00945at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.300 kb on + strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.301 kb on - strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.330 kb on + strand, within MPMX19_00946at 983.331 kb on - strand, within MPMX19_00946at 983.331 kb on - strand, within MPMX19_00946at 983.331 kb on - strand, within MPMX19_00946at 983.331 kb on - strand, within MPMX19_00946at 983.331 kb on - strand, within MPMX19_00946at 983.331 kb on - strand, within MPMX19_00946at 983.429 kb on + strand, within MPMX19_00946at 983.429 kb on + strand, within MPMX19_00946at 983.429 kb on + strand, within MPMX19_00946at 983.429 kb on + strand, within MPMX19_00946at 983.429 kb on + strand, within MPMX19_00946at 983.429 kb on + strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.430 kb on - strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.576 kb on + strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.577 kb on - strand, within MPMX19_00946at 983.621 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.792 kb on + strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.793 kb on - strand, within MPMX19_00946at 983.949 kb on - strandat 983.986 kb on + strandat 983.986 kb on + strandat 983.986 kb on + strandat 983.986 kb on + strandat 983.987 kb on - strandat 983.987 kb on - strandat 984.009 kb on + strandat 984.010 kb on - strandat 984.010 kb on - strandat 984.010 kb on - strandat 984.010 kb on - strandat 984.259 kb on - strand, within MPMX19_00947at 984.259 kb on - strand, within MPMX19_00947at 984.279 kb on - strand, within MPMX19_00947at 984.688 kb on + strand, within MPMX19_00947at 984.688 kb on + strand, within MPMX19_00947at 984.688 kb on + strand, within MPMX19_00947at 984.728 kb on + strand, within MPMX19_00947at 984.728 kb on + strand, within MPMX19_00947at 984.729 kb on - strand, within MPMX19_00947at 984.729 kb on - strand, within MPMX19_00947at 984.729 kb on - strand, within MPMX19_00947at 984.729 kb on - strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.817 kb on + strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.818 kb on - strand, within MPMX19_00947at 984.952 kb on + strand, within MPMX19_00947at 984.952 kb on + strand, within MPMX19_00947at 984.953 kb on - strand, within MPMX19_00947at 984.953 kb on - strand, within MPMX19_00947at 984.953 kb on - strand, within MPMX19_00947

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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982,251 + MPMX19_00945 0.36 -0.3
982,251 + MPMX19_00945 0.36 +0.7
982,251 + MPMX19_00945 0.36 +0.1
982,251 + MPMX19_00945 0.36 -0.0
982,252 - MPMX19_00945 0.36 -1.3
982,252 - MPMX19_00945 0.36 -0.8
982,252 - MPMX19_00945 0.36 -0.1
982,901 + MPMX19_00945 0.88 -0.9
982,901 + MPMX19_00945 0.88 +0.1
982,901 + MPMX19_00945 0.88 +0.2
982,902 - MPMX19_00945 0.88 -1.6
982,902 - MPMX19_00945 0.88 -1.5
982,902 - MPMX19_00945 0.88 -1.3
982,902 - MPMX19_00945 0.88 -0.7
982,902 - MPMX19_00945 0.88 -0.3
982,902 - MPMX19_00945 0.88 -0.6
982,902 - MPMX19_00945 0.88 -0.7
982,902 - MPMX19_00945 0.88 -1.9
982,902 - MPMX19_00945 0.88 -1.2
982,902 - MPMX19_00945 0.88 -0.0
983,300 + MPMX19_00946 0.27 +0.6
983,300 + MPMX19_00946 0.27 +0.2
983,300 + MPMX19_00946 0.27 -0.8
983,300 + MPMX19_00946 0.27 +0.1
983,300 + MPMX19_00946 0.27 -0.6
983,300 + MPMX19_00946 0.27 -0.0
983,300 + MPMX19_00946 0.27 -1.3
983,300 + MPMX19_00946 0.27 +0.3
983,300 + MPMX19_00946 0.27 -1.3
983,300 + MPMX19_00946 0.27 -1.2
983,300 + MPMX19_00946 0.27 -1.3
983,301 - MPMX19_00946 0.27 -0.3
983,301 - MPMX19_00946 0.27 +0.9
983,301 - MPMX19_00946 0.27 +0.4
983,301 - MPMX19_00946 0.27 +0.2
983,301 - MPMX19_00946 0.27 -1.2
983,301 - MPMX19_00946 0.27 -0.9
983,301 - MPMX19_00946 0.27 -1.3
983,301 - MPMX19_00946 0.27 -0.2
983,301 - MPMX19_00946 0.27 +0.1
983,301 - MPMX19_00946 0.27 -1.4
983,301 - MPMX19_00946 0.27 -0.7
983,301 - MPMX19_00946 0.27 -0.6
983,301 - MPMX19_00946 0.27 +0.0
983,301 - MPMX19_00946 0.27 -0.1
983,301 - MPMX19_00946 0.27 +0.2
983,301 - MPMX19_00946 0.27 +0.4
983,301 - MPMX19_00946 0.27 -0.8
983,330 + MPMX19_00946 0.30 +0.4
983,330 + MPMX19_00946 0.30 -0.6
983,330 + MPMX19_00946 0.30 -0.5
983,330 + MPMX19_00946 0.30 -0.6
983,330 + MPMX19_00946 0.30 -1.6
983,330 + MPMX19_00946 0.30 -2.1
983,330 + MPMX19_00946 0.30 +0.8
983,330 + MPMX19_00946 0.30 +1.0
983,330 + MPMX19_00946 0.30 -0.7
983,330 + MPMX19_00946 0.30 -2.1
983,330 + MPMX19_00946 0.30 -0.6
983,331 - MPMX19_00946 0.31 -1.0
983,331 - MPMX19_00946 0.31 -0.3
983,331 - MPMX19_00946 0.31 -0.9
983,331 - MPMX19_00946 0.31 -1.9
983,331 - MPMX19_00946 0.31 -0.0
983,331 - MPMX19_00946 0.31 +0.3
983,429 + MPMX19_00946 0.41 +0.5
983,429 + MPMX19_00946 0.41 +1.2
983,429 + MPMX19_00946 0.41 -0.6
983,429 + MPMX19_00946 0.41 -0.3
983,429 + MPMX19_00946 0.41 -0.5
983,429 + MPMX19_00946 0.41 -1.8
983,430 - MPMX19_00946 0.41 +0.7
983,430 - MPMX19_00946 0.41 -1.1
983,430 - MPMX19_00946 0.41 -0.5
983,430 - MPMX19_00946 0.41 -1.7
983,430 - MPMX19_00946 0.41 -0.7
983,430 - MPMX19_00946 0.41 -0.6
983,430 - MPMX19_00946 0.41 +0.4
983,430 - MPMX19_00946 0.41 -2.3
983,576 + MPMX19_00946 0.57 -1.7
983,576 + MPMX19_00946 0.57 -1.0
983,576 + MPMX19_00946 0.57 -0.8
983,576 + MPMX19_00946 0.57 -0.1
983,576 + MPMX19_00946 0.57 +0.8
983,576 + MPMX19_00946 0.57 -0.9
983,576 + MPMX19_00946 0.57 -0.4
983,576 + MPMX19_00946 0.57 -0.9
983,576 + MPMX19_00946 0.57 +1.0
983,576 + MPMX19_00946 0.57 -1.4
983,576 + MPMX19_00946 0.57 -1.8
983,576 + MPMX19_00946 0.57 -0.1
983,576 + MPMX19_00946 0.57 -1.4
983,576 + MPMX19_00946 0.57 +0.1
983,576 + MPMX19_00946 0.57 -1.5
983,576 + MPMX19_00946 0.57 -0.3
983,577 - MPMX19_00946 0.57 -0.6
983,577 - MPMX19_00946 0.57 +0.4
983,577 - MPMX19_00946 0.57 +0.1
983,577 - MPMX19_00946 0.57 -0.6
983,577 - MPMX19_00946 0.57 -0.7
983,577 - MPMX19_00946 0.57 +2.8
983,577 - MPMX19_00946 0.57 -0.0
983,577 - MPMX19_00946 0.57 -2.8
983,577 - MPMX19_00946 0.57 -0.0
983,577 - MPMX19_00946 0.57 +0.4
983,577 - MPMX19_00946 0.57 -2.0
983,577 - MPMX19_00946 0.57 +0.4
983,577 - MPMX19_00946 0.57 -1.1
983,621 + MPMX19_00946 0.62 +1.0
983,792 + MPMX19_00946 0.80 -0.2
983,792 + MPMX19_00946 0.80 +1.7
983,792 + MPMX19_00946 0.80 -0.6
983,792 + MPMX19_00946 0.80 -0.1
983,792 + MPMX19_00946 0.80 +0.2
983,792 + MPMX19_00946 0.80 -1.3
983,792 + MPMX19_00946 0.80 -0.5
983,792 + MPMX19_00946 0.80 -0.2
983,793 - MPMX19_00946 0.80 -1.3
983,793 - MPMX19_00946 0.80 -1.2
983,793 - MPMX19_00946 0.80 -0.7
983,793 - MPMX19_00946 0.80 -0.7
983,793 - MPMX19_00946 0.80 -0.0
983,793 - MPMX19_00946 0.80 +0.1
983,793 - MPMX19_00946 0.80 -0.3
983,793 - MPMX19_00946 0.80 -1.6
983,793 - MPMX19_00946 0.80 +0.8
983,793 - MPMX19_00946 0.80 -1.2
983,793 - MPMX19_00946 0.80 +0.2
983,793 - MPMX19_00946 0.80 -0.2
983,949 - +0.2
983,986 + -0.7
983,986 + -0.8
983,986 + -0.0
983,986 + -0.3
983,987 - -0.1
983,987 - -1.6
984,009 + +0.6
984,010 - -0.8
984,010 - -0.8
984,010 - -0.7
984,010 - +0.4
984,259 - MPMX19_00947 0.20 -1.5
984,259 - MPMX19_00947 0.20 -1.0
984,279 - MPMX19_00947 0.21 +0.6
984,688 + MPMX19_00947 0.50 -1.3
984,688 + MPMX19_00947 0.50 +0.7
984,688 + MPMX19_00947 0.50 +0.7
984,728 + MPMX19_00947 0.52 +0.4
984,728 + MPMX19_00947 0.52 +1.0
984,729 - MPMX19_00947 0.53 +0.2
984,729 - MPMX19_00947 0.53 -3.1
984,729 - MPMX19_00947 0.53 -1.0
984,729 - MPMX19_00947 0.53 -0.6
984,817 + MPMX19_00947 0.59 -0.0
984,817 + MPMX19_00947 0.59 -1.3
984,817 + MPMX19_00947 0.59 -0.5
984,817 + MPMX19_00947 0.59 -0.0
984,817 + MPMX19_00947 0.59 -2.7
984,817 + MPMX19_00947 0.59 +0.6
984,817 + MPMX19_00947 0.59 -0.8
984,817 + MPMX19_00947 0.59 +0.3
984,817 + MPMX19_00947 0.59 -1.2
984,817 + MPMX19_00947 0.59 -0.3
984,817 + MPMX19_00947 0.59 -0.5
984,817 + MPMX19_00947 0.59 -2.0
984,817 + MPMX19_00947 0.59 -2.0
984,818 - MPMX19_00947 0.59 -0.8
984,818 - MPMX19_00947 0.59 +0.1
984,818 - MPMX19_00947 0.59 -0.4
984,818 - MPMX19_00947 0.59 +0.1
984,818 - MPMX19_00947 0.59 -0.0
984,818 - MPMX19_00947 0.59 +0.0
984,818 - MPMX19_00947 0.59 +0.1
984,818 - MPMX19_00947 0.59 +0.4
984,818 - MPMX19_00947 0.59 -1.9
984,818 - MPMX19_00947 0.59 -0.3
984,818 - MPMX19_00947 0.59 -0.0
984,818 - MPMX19_00947 0.59 -1.0
984,818 - MPMX19_00947 0.59 -0.3
984,818 - MPMX19_00947 0.59 +0.6
984,818 - MPMX19_00947 0.59 -0.0
984,818 - MPMX19_00947 0.59 +1.0
984,818 - MPMX19_00947 0.59 -0.6
984,818 - MPMX19_00947 0.59 +0.6
984,952 + MPMX19_00947 0.68 -0.8
984,952 + MPMX19_00947 0.68 +0.3
984,953 - MPMX19_00947 0.68 -0.6
984,953 - MPMX19_00947 0.68 -1.4
984,953 - MPMX19_00947 0.68 +1.0

Or see this region's nucleotide sequence