Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00922 and MPMX19_00923 are separated by 42 nucleotides MPMX19_00923 and MPMX19_00924 overlap by 1 nucleotides MPMX19_00924 and MPMX19_00925 are separated by 174 nucleotides
MPMX19_00922: MPMX19_00922 - Isocitrate dehydrogenase [NADP], at 961,525 to 962,970
_00922
MPMX19_00923: MPMX19_00923 - hypothetical protein, at 963,013 to 963,564
_00923
MPMX19_00924: MPMX19_00924 - hypothetical protein, at 963,564 to 964,364
_00924
MPMX19_00925: MPMX19_00925 - hypothetical protein, at 964,539 to 964,907
_00925
Position (kb) 963
964 Strain fitness (log2 ratio) -2
-1
0
1
2 at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.991 kb on + strand at 962.992 kb on - strand at 962.992 kb on - strand at 963.106 kb on + strand, within MPMX19_00923 at 963.106 kb on + strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.107 kb on - strand, within MPMX19_00923 at 963.436 kb on + strand, within MPMX19_00923 at 963.437 kb on - strand, within MPMX19_00923 at 963.437 kb on - strand, within MPMX19_00923 at 963.782 kb on + strand, within MPMX19_00924 at 964.152 kb on + strand, within MPMX19_00924 at 964.369 kb on - strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.380 kb on + strand at 964.381 kb on - strand at 964.381 kb on - strand at 964.381 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 962,991 + -0.2 962,991 + -1.0 962,991 + +2.0 962,991 + +0.8 962,991 + -0.7 962,992 - -0.4 962,992 - -0.3 963,106 + MPMX19_00923 0.17 -0.6 963,106 + MPMX19_00923 0.17 -0.3 963,107 - MPMX19_00923 0.17 -1.0 963,107 - MPMX19_00923 0.17 +1.6 963,107 - MPMX19_00923 0.17 -1.6 963,107 - MPMX19_00923 0.17 -0.0 963,107 - MPMX19_00923 0.17 -1.7 963,107 - MPMX19_00923 0.17 -1.1 963,107 - MPMX19_00923 0.17 -1.6 963,436 + MPMX19_00923 0.77 -0.0 963,437 - MPMX19_00923 0.77 -0.5 963,437 - MPMX19_00923 0.77 +0.3 963,782 + MPMX19_00924 0.27 -0.5 964,152 + MPMX19_00924 0.73 +0.4 964,369 - +0.2 964,380 + -0.8 964,380 + -0.3 964,380 + -2.0 964,380 + +0.6 964,380 + -1.6 964,380 + -0.3 964,380 + -1.3 964,381 - -0.6 964,381 - -0.0 964,381 - -0.8
Or see this region's nucleotide sequence