Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00854 and MPMX19_00855 are separated by 70 nucleotides MPMX19_00855 and MPMX19_00856 are separated by 170 nucleotides
MPMX19_00854: MPMX19_00854 - hypothetical protein, at 884,976 to 888,590
_00854
MPMX19_00855: MPMX19_00855 - Immunogenic protein MPT70, at 888,661 to 889,206
_00855
MPMX19_00856: MPMX19_00856 - Low affinity potassium transport system protein kup, at 889,377 to 891,275
_00856
Position (kb) 888
889
890 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 887.697 kb on + strand, within MPMX19_00854 at 887.697 kb on + strand, within MPMX19_00854 at 887.697 kb on + strand, within MPMX19_00854 at 887.697 kb on + strand, within MPMX19_00854 at 887.698 kb on - strand, within MPMX19_00854 at 887.698 kb on - strand, within MPMX19_00854 at 887.802 kb on + strand, within MPMX19_00854 at 887.802 kb on + strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.803 kb on - strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.850 kb on + strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 887.851 kb on - strand, within MPMX19_00854 at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.524 kb on + strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.525 kb on - strand at 888.549 kb on + strand at 888.550 kb on - strand at 888.550 kb on - strand at 888.588 kb on + strand at 888.588 kb on + strand at 888.588 kb on + strand at 888.588 kb on + strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.589 kb on - strand at 888.612 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.613 kb on + strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.614 kb on - strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.646 kb on + strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.647 kb on - strand at 888.828 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.893 kb on + strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 888.894 kb on - strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.112 kb on + strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.113 kb on - strand, within MPMX19_00855 at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.206 kb on + strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.207 kb on - strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.248 kb on + strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.249 kb on - strand at 889.257 kb on + strand at 889.293 kb on + strand at 889.293 kb on + strand at 889.294 kb on - strand at 889.294 kb on - strand at 889.378 kb on + strand at 889.378 kb on + strand at 889.378 kb on + strand at 889.379 kb on - strand at 889.379 kb on - strand at 889.379 kb on - strand at 889.379 kb on - strand at 889.387 kb on - strand at 889.387 kb on - strand at 889.387 kb on - strand at 889.387 kb on - strand at 889.645 kb on + strand, within MPMX19_00856 at 889.645 kb on + strand, within MPMX19_00856 at 889.645 kb on + strand, within MPMX19_00856 at 889.646 kb on - strand, within MPMX19_00856 at 889.646 kb on - strand, within MPMX19_00856 at 889.646 kb on - strand, within MPMX19_00856 at 890.150 kb on - strand, within MPMX19_00856
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 887,697 + MPMX19_00854 0.75 -1.6 887,697 + MPMX19_00854 0.75 -0.8 887,697 + MPMX19_00854 0.75 -0.1 887,697 + MPMX19_00854 0.75 -0.9 887,698 - MPMX19_00854 0.75 -0.9 887,698 - MPMX19_00854 0.75 -1.0 887,802 + MPMX19_00854 0.78 -0.1 887,802 + MPMX19_00854 0.78 -0.0 887,803 - MPMX19_00854 0.78 -2.2 887,803 - MPMX19_00854 0.78 -3.3 887,803 - MPMX19_00854 0.78 -2.3 887,803 - MPMX19_00854 0.78 -1.9 887,803 - MPMX19_00854 0.78 -0.7 887,803 - MPMX19_00854 0.78 +0.2 887,803 - MPMX19_00854 0.78 -1.0 887,803 - MPMX19_00854 0.78 -0.7 887,803 - MPMX19_00854 0.78 +0.5 887,803 - MPMX19_00854 0.78 -0.8 887,803 - MPMX19_00854 0.78 -0.8 887,803 - MPMX19_00854 0.78 -0.7 887,850 + MPMX19_00854 0.80 -1.2 887,850 + MPMX19_00854 0.80 -0.6 887,850 + MPMX19_00854 0.80 -2.0 887,850 + MPMX19_00854 0.80 -0.0 887,850 + MPMX19_00854 0.80 -0.8 887,850 + MPMX19_00854 0.80 +1.0 887,851 - MPMX19_00854 0.80 +0.2 887,851 - MPMX19_00854 0.80 +1.0 887,851 - MPMX19_00854 0.80 -0.0 887,851 - MPMX19_00854 0.80 -1.0 887,851 - MPMX19_00854 0.80 -1.8 887,851 - MPMX19_00854 0.80 -0.6 887,851 - MPMX19_00854 0.80 -1.2 887,851 - MPMX19_00854 0.80 -0.3 887,851 - MPMX19_00854 0.80 -0.3 887,851 - MPMX19_00854 0.80 -0.4 888,524 + +0.1 888,524 + -0.2 888,524 + -1.5 888,524 + -0.3 888,524 + -2.0 888,524 + -1.0 888,524 + -1.6 888,524 + -0.8 888,524 + -1.5 888,524 + -0.3 888,525 - -0.3 888,525 - -1.8 888,525 - -0.0 888,525 - -0.2 888,525 - -0.0 888,525 - -1.9 888,525 - -0.6 888,525 - -0.6 888,525 - -1.8 888,525 - -0.5 888,525 - +0.2 888,525 - -1.7 888,525 - +0.9 888,549 + -1.6 888,550 - -1.0 888,550 - -1.5 888,588 + +1.0 888,588 + -0.0 888,588 + +1.2 888,588 + +0.2 888,589 - -1.8 888,589 - +0.5 888,589 - +0.3 888,589 - -0.7 888,589 - +0.3 888,589 - -0.2 888,589 - -0.5 888,589 - -1.1 888,612 + -1.1 888,613 + +1.0 888,613 + -0.0 888,613 + +0.6 888,613 + -2.1 888,614 - -0.8 888,614 - -0.5 888,614 - -0.5 888,614 - -1.5 888,646 + -1.0 888,646 + +0.7 888,646 + +0.2 888,646 + -1.1 888,646 + -1.0 888,646 + -0.3 888,647 - -2.7 888,647 - +0.7 888,647 - +1.0 888,647 - -1.1 888,647 - -0.2 888,647 - -1.0 888,647 - +0.4 888,647 - -2.0 888,647 - -3.1 888,647 - -1.3 888,828 + MPMX19_00855 0.31 -0.6 888,893 + MPMX19_00855 0.42 +0.1 888,893 + MPMX19_00855 0.42 +0.4 888,893 + MPMX19_00855 0.42 -2.6 888,893 + MPMX19_00855 0.42 +1.4 888,893 + MPMX19_00855 0.42 -0.6 888,893 + MPMX19_00855 0.42 -1.6 888,893 + MPMX19_00855 0.42 -1.0 888,894 - MPMX19_00855 0.43 -1.5 888,894 - MPMX19_00855 0.43 -0.5 888,894 - MPMX19_00855 0.43 -0.3 888,894 - MPMX19_00855 0.43 -0.5 888,894 - MPMX19_00855 0.43 -0.3 888,894 - MPMX19_00855 0.43 -0.7 888,894 - MPMX19_00855 0.43 +0.4 888,894 - MPMX19_00855 0.43 -0.8 888,894 - MPMX19_00855 0.43 +0.4 888,894 - MPMX19_00855 0.43 -0.2 888,894 - MPMX19_00855 0.43 -1.5 888,894 - MPMX19_00855 0.43 -0.3 888,894 - MPMX19_00855 0.43 -0.8 888,894 - MPMX19_00855 0.43 -0.2 888,894 - MPMX19_00855 0.43 -0.6 888,894 - MPMX19_00855 0.43 -1.0 888,894 - MPMX19_00855 0.43 -1.3 888,894 - MPMX19_00855 0.43 -0.0 888,894 - MPMX19_00855 0.43 -0.7 889,112 + MPMX19_00855 0.83 -0.1 889,112 + MPMX19_00855 0.83 -1.0 889,112 + MPMX19_00855 0.83 -1.7 889,112 + MPMX19_00855 0.83 -0.0 889,112 + MPMX19_00855 0.83 -0.6 889,112 + MPMX19_00855 0.83 +0.2 889,113 - MPMX19_00855 0.83 -0.7 889,113 - MPMX19_00855 0.83 -1.5 889,113 - MPMX19_00855 0.83 -1.3 889,113 - MPMX19_00855 0.83 +0.4 889,113 - MPMX19_00855 0.83 -0.3 889,113 - MPMX19_00855 0.83 -2.1 889,113 - MPMX19_00855 0.83 -2.0 889,113 - MPMX19_00855 0.83 +0.1 889,113 - MPMX19_00855 0.83 -0.0 889,113 - MPMX19_00855 0.83 -0.3 889,206 + +0.5 889,206 + -1.0 889,206 + -0.5 889,206 + +1.0 889,206 + -1.6 889,206 + -1.4 889,206 + -0.2 889,206 + -2.0 889,206 + -0.6 889,206 + -1.2 889,206 + -0.5 889,206 + +1.2 889,207 - -1.8 889,207 - +0.3 889,207 - -1.0 889,207 - -2.1 889,207 - -0.6 889,248 + +0.2 889,248 + -0.3 889,248 + +0.4 889,248 + -0.0 889,248 + -1.3 889,248 + -1.2 889,248 + -0.2 889,248 + -0.5 889,248 + -0.0 889,248 + +0.1 889,248 + +1.1 889,248 + -0.6 889,248 + -1.6 889,248 + -1.0 889,248 + -0.0 889,249 - -0.7 889,249 - -2.1 889,249 - -0.6 889,249 - -1.1 889,249 - -0.6 889,249 - -1.3 889,249 - +0.1 889,249 - -0.8 889,249 - +0.7 889,249 - -0.7 889,249 - +0.7 889,249 - -0.5 889,249 - -1.0 889,249 - -0.0 889,249 - -0.4 889,249 - -0.8 889,249 - -0.5 889,257 + -1.7 889,293 + -0.2 889,293 + +1.0 889,294 - -0.3 889,294 - -0.2 889,378 + -0.6 889,378 + +0.2 889,378 + -0.7 889,379 - -2.3 889,379 - -0.3 889,379 - -1.7 889,379 - -0.8 889,387 - +0.4 889,387 - -0.3 889,387 - -1.0 889,387 - -1.2 889,645 + MPMX19_00856 0.14 -0.3 889,645 + MPMX19_00856 0.14 -0.6 889,645 + MPMX19_00856 0.14 +0.6 889,646 - MPMX19_00856 0.14 -1.0 889,646 - MPMX19_00856 0.14 -0.3 889,646 - MPMX19_00856 0.14 -0.6 890,150 - MPMX19_00856 0.41 -1.2
Or see this region's nucleotide sequence