Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00822

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00820 and MPMX19_00821 are separated by 17 nucleotidesMPMX19_00821 and MPMX19_00822 are separated by 76 nucleotidesMPMX19_00822 and MPMX19_00823 are separated by 226 nucleotides MPMX19_00820: MPMX19_00820 - Multicopper oxidase MmcO, at 847,283 to 848,896 _00820 MPMX19_00821: MPMX19_00821 - Protein SlyX, at 848,914 to 849,141 _00821 MPMX19_00822: MPMX19_00822 - Divalent metal cation transporter MntH, at 849,218 to 850,513 _00822 MPMX19_00823: MPMX19_00823 - hypothetical protein, at 850,740 to 852,953 _00823 Position (kb) 849 850 851Strain fitness (log2 ratio) -2 -1 0 1 2at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.586 kb on + strand, within MPMX19_00820at 848.586 kb on + strand, within MPMX19_00820at 848.586 kb on + strand, within MPMX19_00820at 848.587 kb on - strand, within MPMX19_00820at 848.587 kb on - strand, within MPMX19_00820at 848.722 kb on - strand, within MPMX19_00820at 848.880 kb on - strandat 848.880 kb on - strandat 848.880 kb on - strandat 848.880 kb on - strandat 848.880 kb on - strandat 848.918 kb on + strandat 848.918 kb on + strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.961 kb on - strand, within MPMX19_00821at 848.961 kb on - strand, within MPMX19_00821at 849.071 kb on + strand, within MPMX19_00821at 849.071 kb on + strand, within MPMX19_00821at 849.072 kb on - strand, within MPMX19_00821at 849.072 kb on - strand, within MPMX19_00821at 849.072 kb on - strand, within MPMX19_00821at 849.141 kb on + strandat 849.141 kb on + strandat 849.141 kb on + strandat 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 850.396 kb on + strandat 850.396 kb on + strandat 850.396 kb on + strandat 850.396 kb on + strandat 850.397 kb on - strandat 850.397 kb on - strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.398 kb on + strandat 850.399 kb on - strandat 850.399 kb on - strandat 850.399 kb on - strandat 850.924 kb on + strandat 850.924 kb on + strandat 850.924 kb on + strandat 850.924 kb on + strandat 850.925 kb on - strandat 850.925 kb on - strandat 850.925 kb on - strandat 850.925 kb on - strandat 850.925 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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848,573 + MPMX19_00820 0.80 -0.8
848,573 + MPMX19_00820 0.80 +0.7
848,573 + MPMX19_00820 0.80 -0.3
848,573 + MPMX19_00820 0.80 -1.2
848,573 + MPMX19_00820 0.80 -2.2
848,573 + MPMX19_00820 0.80 -1.3
848,573 + MPMX19_00820 0.80 -0.7
848,573 + MPMX19_00820 0.80 +0.0
848,573 + MPMX19_00820 0.80 +0.5
848,573 + MPMX19_00820 0.80 -0.1
848,573 + MPMX19_00820 0.80 +0.2
848,574 - MPMX19_00820 0.80 -1.3
848,574 - MPMX19_00820 0.80 -1.2
848,574 - MPMX19_00820 0.80 +0.9
848,574 - MPMX19_00820 0.80 +2.0
848,574 - MPMX19_00820 0.80 -0.1
848,574 - MPMX19_00820 0.80 -0.2
848,574 - MPMX19_00820 0.80 -0.9
848,574 - MPMX19_00820 0.80 -0.3
848,574 - MPMX19_00820 0.80 -0.0
848,586 + MPMX19_00820 0.81 -0.3
848,586 + MPMX19_00820 0.81 -1.0
848,586 + MPMX19_00820 0.81 +1.4
848,587 - MPMX19_00820 0.81 -0.8
848,587 - MPMX19_00820 0.81 -1.9
848,722 - MPMX19_00820 0.89 -1.2
848,880 - -1.3
848,880 - +0.3
848,880 - +0.3
848,880 - -0.0
848,880 - +0.2
848,918 + -2.2
848,918 + -0.9
848,919 - -0.8
848,919 - -0.6
848,919 - -0.7
848,919 - -1.4
848,919 - -0.1
848,919 - -0.5
848,919 - -1.1
848,919 - -1.8
848,960 + MPMX19_00821 0.20 -0.6
848,960 + MPMX19_00821 0.20 -1.3
848,960 + MPMX19_00821 0.20 -1.0
848,960 + MPMX19_00821 0.20 -1.7
848,960 + MPMX19_00821 0.20 -1.4
848,960 + MPMX19_00821 0.20 -0.5
848,961 - MPMX19_00821 0.21 -0.6
848,961 - MPMX19_00821 0.21 -0.3
849,071 + MPMX19_00821 0.69 +0.2
849,071 + MPMX19_00821 0.69 -0.9
849,072 - MPMX19_00821 0.69 -1.7
849,072 - MPMX19_00821 0.69 -0.5
849,072 - MPMX19_00821 0.69 +0.2
849,141 + +0.2
849,141 + -1.3
849,141 + +0.2
849,894 + MPMX19_00822 0.52 +0.4
849,894 + MPMX19_00822 0.52 +0.2
849,894 + MPMX19_00822 0.52 +0.9
849,894 + MPMX19_00822 0.52 +0.7
849,894 + MPMX19_00822 0.52 -0.6
849,894 + MPMX19_00822 0.52 +0.4
849,894 + MPMX19_00822 0.52 -0.2
849,894 + MPMX19_00822 0.52 -0.7
849,894 + MPMX19_00822 0.52 -0.3
849,894 + MPMX19_00822 0.52 -0.8
849,894 + MPMX19_00822 0.52 +1.4
849,894 + MPMX19_00822 0.52 +0.2
849,894 + MPMX19_00822 0.52 -0.9
849,894 + MPMX19_00822 0.52 +0.8
849,894 + MPMX19_00822 0.52 +0.9
849,894 + MPMX19_00822 0.52 +1.0
849,894 + MPMX19_00822 0.52 -0.3
849,894 + MPMX19_00822 0.52 +1.0
849,894 + MPMX19_00822 0.52 +1.2
849,895 - MPMX19_00822 0.52 +1.4
849,895 - MPMX19_00822 0.52 -0.5
849,895 - MPMX19_00822 0.52 -0.3
849,895 - MPMX19_00822 0.52 +0.3
849,895 - MPMX19_00822 0.52 -0.7
849,895 - MPMX19_00822 0.52 -0.0
849,895 - MPMX19_00822 0.52 +0.8
849,895 - MPMX19_00822 0.52 -0.1
849,895 - MPMX19_00822 0.52 -0.5
849,895 - MPMX19_00822 0.52 +0.7
849,895 - MPMX19_00822 0.52 +0.1
849,895 - MPMX19_00822 0.52 +1.2
849,895 - MPMX19_00822 0.52 -0.1
849,895 - MPMX19_00822 0.52 +0.1
849,895 - MPMX19_00822 0.52 -0.6
849,895 - MPMX19_00822 0.52 -0.0
849,895 - MPMX19_00822 0.52 -0.9
849,895 - MPMX19_00822 0.52 +0.4
849,895 - MPMX19_00822 0.52 -0.7
850,396 + -1.1
850,396 + -0.3
850,396 + -0.8
850,396 + +0.1
850,397 - -0.3
850,397 - -1.2
850,398 + -1.5
850,398 + +2.4
850,398 + -1.1
850,398 + +0.1
850,398 + -0.6
850,398 + -1.5
850,398 + -1.3
850,398 + -0.4
850,398 + -0.4
850,398 + -0.8
850,398 + -0.3
850,398 + -1.4
850,399 - -0.0
850,399 - -1.2
850,399 - +0.1
850,924 + -0.2
850,924 + -0.9
850,924 + +0.6
850,924 + +0.9
850,925 - -0.3
850,925 - +0.2
850,925 - -0.6
850,925 - -0.0
850,925 - -0.1

Or see this region's nucleotide sequence