Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00816 and MPMX19_00817 are separated by 48 nucleotides MPMX19_00817 and MPMX19_00818 are separated by 5 nucleotides MPMX19_00818 and MPMX19_00819 are separated by 117 nucleotides MPMX19_00819 and MPMX19_00820 are separated by 70 nucleotides
MPMX19_00816: MPMX19_00816 - Alpha-2-macroglobulin, at 839,129 to 844,342
_00816
MPMX19_00817: MPMX19_00817 - Penicillin-binding protein 1C, at 844,391 to 846,430
_00817
MPMX19_00818: MPMX19_00818 - hypothetical protein, at 846,436 to 846,708
_00818
MPMX19_00819: MPMX19_00819 - hypothetical protein, at 846,826 to 847,212
_00819
MPMX19_00820: MPMX19_00820 - Multicopper oxidase MmcO, at 847,283 to 848,896
_00820
Position (kb) 844
845
846
847 Strain fitness (log2 ratio) -2
-1
0
1
2 at 843.392 kb on + strand, within MPMX19_00816 at 843.392 kb on + strand, within MPMX19_00816 at 843.393 kb on - strand, within MPMX19_00816 at 843.393 kb on - strand, within MPMX19_00816 at 843.546 kb on - strand, within MPMX19_00816 at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.133 kb on + strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.134 kb on - strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.166 kb on + strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.167 kb on - strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.247 kb on + strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.248 kb on - strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.280 kb on + strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.281 kb on - strand at 844.367 kb on - strand at 844.604 kb on + strand, within MPMX19_00817 at 844.604 kb on + strand, within MPMX19_00817 at 844.604 kb on + strand, within MPMX19_00817 at 844.604 kb on + strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.605 kb on - strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.835 kb on + strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.836 kb on - strand, within MPMX19_00817 at 844.853 kb on + strand, within MPMX19_00817 at 844.854 kb on - strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.306 kb on + strand, within MPMX19_00817 at 845.307 kb on - strand, within MPMX19_00817 at 845.307 kb on - strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.405 kb on + strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.406 kb on - strand, within MPMX19_00817 at 845.717 kb on + strand, within MPMX19_00817 at 845.718 kb on - strand, within MPMX19_00817 at 845.718 kb on - strand, within MPMX19_00817 at 845.921 kb on + strand, within MPMX19_00817 at 845.921 kb on + strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.922 kb on - strand, within MPMX19_00817 at 845.963 kb on + strand, within MPMX19_00817 at 845.963 kb on + strand, within MPMX19_00817 at 845.963 kb on + strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.964 kb on - strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.965 kb on + strand, within MPMX19_00817 at 845.966 kb on + strand, within MPMX19_00817 at 845.966 kb on - strand, within MPMX19_00817 at 845.966 kb on - strand, within MPMX19_00817 at 846.017 kb on + strand, within MPMX19_00817 at 846.017 kb on + strand, within MPMX19_00817 at 846.018 kb on - strand, within MPMX19_00817 at 846.018 kb on - strand, within MPMX19_00817 at 846.018 kb on - strand, within MPMX19_00817 at 846.438 kb on - strand at 846.530 kb on + strand, within MPMX19_00818 at 846.530 kb on + strand, within MPMX19_00818 at 846.530 kb on + strand, within MPMX19_00818 at 846.530 kb on + strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.531 kb on - strand, within MPMX19_00818 at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.682 kb on + strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.683 kb on - strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.684 kb on + strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.685 kb on - strand at 846.724 kb on + strand at 846.725 kb on - strand at 846.725 kb on - strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.738 kb on + strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.739 kb on - strand at 846.783 kb on + strand at 846.783 kb on + strand at 846.784 kb on - strand at 846.784 kb on - strand at 846.790 kb on + strand at 846.791 kb on - strand at 846.791 kb on - strand at 846.791 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 843,392 + MPMX19_00816 0.82 +0.8 843,392 + MPMX19_00816 0.82 +0.1 843,393 - MPMX19_00816 0.82 -2.5 843,393 - MPMX19_00816 0.82 +0.6 843,546 - MPMX19_00816 0.85 -0.6 844,133 + -0.3 844,133 + +0.1 844,133 + +0.8 844,133 + -0.2 844,134 - +0.9 844,134 - -2.0 844,134 - +0.2 844,134 - -0.0 844,134 - -0.5 844,134 - -1.2 844,134 - -1.2 844,166 + -2.1 844,166 + -0.2 844,166 + -0.6 844,166 + -0.1 844,166 + -1.8 844,167 - -0.3 844,167 - +0.4 844,167 - -0.5 844,167 - +0.7 844,167 - +0.2 844,167 - -1.2 844,247 + -0.8 844,247 + -1.9 844,247 + -1.2 844,247 + -1.0 844,247 + +1.6 844,248 - -0.3 844,248 - +0.7 844,248 - -1.1 844,248 - -0.0 844,248 - -0.3 844,248 - -1.8 844,248 - +0.7 844,248 - -1.2 844,248 - +1.3 844,280 + -0.1 844,280 + -0.4 844,280 + -1.2 844,280 + +0.4 844,280 + -0.6 844,280 + -0.5 844,280 + +0.5 844,280 + -0.7 844,280 + +1.0 844,280 + +0.2 844,280 + -0.8 844,280 + -0.3 844,280 + -0.0 844,280 + -1.1 844,280 + -1.0 844,280 + -0.5 844,280 + -1.2 844,280 + -1.2 844,280 + -0.3 844,280 + +0.3 844,280 + -1.9 844,280 + -2.5 844,280 + +0.4 844,280 + -0.5 844,280 + -1.5 844,280 + -1.2 844,280 + -0.1 844,280 + -1.5 844,280 + -1.0 844,280 + -1.3 844,280 + -0.1 844,280 + +1.0 844,280 + -0.2 844,280 + -0.0 844,281 - -0.8 844,281 - -0.3 844,281 - -0.3 844,281 - +0.1 844,281 - -0.0 844,281 - +0.1 844,281 - +1.0 844,281 - -1.8 844,281 - -1.3 844,281 - -0.6 844,281 - -0.2 844,281 - +0.4 844,281 - +1.4 844,281 - -1.0 844,281 - -0.5 844,281 - -1.2 844,281 - -0.6 844,281 - -0.6 844,281 - -0.3 844,281 - +1.4 844,281 - +0.3 844,281 - -0.9 844,281 - -1.1 844,281 - -0.2 844,281 - -0.0 844,281 - +0.2 844,281 - -0.5 844,281 - -0.8 844,281 - +1.0 844,281 - +0.4 844,281 - -0.5 844,281 - -1.6 844,281 - -1.8 844,281 - -0.0 844,281 - -0.4 844,281 - -0.4 844,281 - -1.8 844,367 - -0.0 844,604 + MPMX19_00817 0.10 -0.3 844,604 + MPMX19_00817 0.10 -0.3 844,604 + MPMX19_00817 0.10 +1.5 844,604 + MPMX19_00817 0.10 +0.6 844,605 - MPMX19_00817 0.10 -0.3 844,605 - MPMX19_00817 0.10 -0.5 844,605 - MPMX19_00817 0.10 +0.6 844,605 - MPMX19_00817 0.10 +0.8 844,835 + MPMX19_00817 0.22 -0.8 844,835 + MPMX19_00817 0.22 -0.4 844,835 + MPMX19_00817 0.22 +0.6 844,835 + MPMX19_00817 0.22 +0.4 844,835 + MPMX19_00817 0.22 -1.7 844,835 + MPMX19_00817 0.22 -0.8 844,835 + MPMX19_00817 0.22 -0.5 844,835 + MPMX19_00817 0.22 -0.1 844,835 + MPMX19_00817 0.22 +1.1 844,836 - MPMX19_00817 0.22 -0.6 844,836 - MPMX19_00817 0.22 +0.2 844,836 - MPMX19_00817 0.22 +1.2 844,836 - MPMX19_00817 0.22 +0.2 844,836 - MPMX19_00817 0.22 -0.9 844,836 - MPMX19_00817 0.22 +2.4 844,836 - MPMX19_00817 0.22 -1.3 844,836 - MPMX19_00817 0.22 +0.7 844,836 - MPMX19_00817 0.22 -0.9 844,836 - MPMX19_00817 0.22 -0.4 844,853 + MPMX19_00817 0.23 +1.4 844,854 - MPMX19_00817 0.23 -1.2 845,306 + MPMX19_00817 0.45 -0.0 845,306 + MPMX19_00817 0.45 +0.7 845,306 + MPMX19_00817 0.45 +0.8 845,306 + MPMX19_00817 0.45 +1.0 845,306 + MPMX19_00817 0.45 +0.1 845,306 + MPMX19_00817 0.45 +0.2 845,306 + MPMX19_00817 0.45 +0.2 845,307 - MPMX19_00817 0.45 -1.7 845,307 - MPMX19_00817 0.45 -0.7 845,405 + MPMX19_00817 0.50 +1.0 845,405 + MPMX19_00817 0.50 -1.0 845,405 + MPMX19_00817 0.50 +1.5 845,405 + MPMX19_00817 0.50 +0.4 845,405 + MPMX19_00817 0.50 -1.0 845,405 + MPMX19_00817 0.50 -0.9 845,405 + MPMX19_00817 0.50 -0.2 845,405 + MPMX19_00817 0.50 -0.3 845,405 + MPMX19_00817 0.50 +0.9 845,405 + MPMX19_00817 0.50 +1.4 845,405 + MPMX19_00817 0.50 -0.3 845,405 + MPMX19_00817 0.50 -0.4 845,405 + MPMX19_00817 0.50 -1.2 845,406 - MPMX19_00817 0.50 -0.6 845,406 - MPMX19_00817 0.50 -0.6 845,406 - MPMX19_00817 0.50 -0.4 845,406 - MPMX19_00817 0.50 +0.3 845,406 - MPMX19_00817 0.50 +0.4 845,406 - MPMX19_00817 0.50 +0.2 845,406 - MPMX19_00817 0.50 -0.2 845,406 - MPMX19_00817 0.50 -1.5 845,406 - MPMX19_00817 0.50 -1.7 845,717 + MPMX19_00817 0.65 -0.0 845,718 - MPMX19_00817 0.65 -0.4 845,718 - MPMX19_00817 0.65 -0.5 845,921 + MPMX19_00817 0.75 +0.3 845,921 + MPMX19_00817 0.75 -0.6 845,922 - MPMX19_00817 0.75 -0.2 845,922 - MPMX19_00817 0.75 +1.0 845,922 - MPMX19_00817 0.75 -0.6 845,922 - MPMX19_00817 0.75 -0.3 845,922 - MPMX19_00817 0.75 -0.6 845,963 + MPMX19_00817 0.77 +0.2 845,963 + MPMX19_00817 0.77 +0.8 845,963 + MPMX19_00817 0.77 +1.3 845,964 - MPMX19_00817 0.77 -0.8 845,964 - MPMX19_00817 0.77 -0.3 845,964 - MPMX19_00817 0.77 -1.0 845,964 - MPMX19_00817 0.77 -0.2 845,964 - MPMX19_00817 0.77 +0.2 845,964 - MPMX19_00817 0.77 -1.1 845,964 - MPMX19_00817 0.77 -1.1 845,965 + MPMX19_00817 0.77 -1.2 845,965 + MPMX19_00817 0.77 -0.1 845,965 + MPMX19_00817 0.77 -1.2 845,965 + MPMX19_00817 0.77 -1.2 845,966 + MPMX19_00817 0.77 -0.1 845,966 - MPMX19_00817 0.77 -0.3 845,966 - MPMX19_00817 0.77 +0.6 846,017 + MPMX19_00817 0.80 -1.0 846,017 + MPMX19_00817 0.80 +0.4 846,018 - MPMX19_00817 0.80 +0.5 846,018 - MPMX19_00817 0.80 -2.4 846,018 - MPMX19_00817 0.80 -0.5 846,438 - -0.6 846,530 + MPMX19_00818 0.34 -0.6 846,530 + MPMX19_00818 0.34 -2.0 846,530 + MPMX19_00818 0.34 +0.5 846,530 + MPMX19_00818 0.34 -1.0 846,531 - MPMX19_00818 0.35 +0.1 846,531 - MPMX19_00818 0.35 -0.4 846,531 - MPMX19_00818 0.35 -0.8 846,531 - MPMX19_00818 0.35 -0.0 846,682 + -0.6 846,682 + -2.2 846,682 + +1.0 846,682 + -1.5 846,682 + -1.2 846,682 + -0.2 846,682 + -1.4 846,682 + -0.6 846,683 - -1.9 846,683 - -0.6 846,683 - -0.1 846,683 - -0.7 846,683 - -1.3 846,683 - -0.0 846,683 - +1.4 846,683 - -1.0 846,683 - -1.3 846,684 + -2.2 846,684 + -0.8 846,684 + -0.5 846,684 + +0.5 846,684 + -0.0 846,684 + -0.6 846,684 + -1.2 846,684 + -1.2 846,684 + -1.6 846,684 + +0.5 846,684 + -1.2 846,685 - -1.1 846,685 - +0.3 846,685 - +0.3 846,685 - -1.5 846,685 - -0.2 846,685 - +0.4 846,685 - -2.2 846,685 - +0.1 846,685 - -0.3 846,724 + -0.9 846,725 - -0.8 846,725 - -1.9 846,738 + -1.2 846,738 + +0.4 846,738 + +0.1 846,738 + -1.5 846,738 + +0.2 846,738 + -0.1 846,738 + +1.7 846,739 - -0.7 846,739 - -1.3 846,739 - -0.3 846,739 - -1.4 846,739 - -0.8 846,739 - +2.7 846,739 - +0.6 846,739 - -1.3 846,739 - +0.4 846,739 - -1.3 846,739 - -0.3 846,739 - -0.8 846,739 - +0.5 846,739 - +0.7 846,783 + +0.4 846,783 + +0.5 846,784 - -0.3 846,784 - -0.3 846,790 + -1.9 846,791 - +0.5 846,791 - -1.3 846,791 - -1.6
Or see this region's nucleotide sequence