Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00793 and MPMX19_00794 are separated by 84 nucleotides MPMX19_00794 and MPMX19_00795 are separated by 25 nucleotides
MPMX19_00793: MPMX19_00793 - hypothetical protein, at 812,750 to 814,354
_00793
MPMX19_00794: MPMX19_00794 - Transcriptional activator protein CopR, at 814,439 to 815,125
_00794
MPMX19_00795: MPMX19_00795 - Adaptive-response sensory-kinase SasA, at 815,151 to 816,584
_00795
Position (kb) 814
815
816 Strain fitness (log2 ratio) -2
-1
0
1 at 813.509 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.518 kb on + strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.519 kb on - strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.611 kb on + strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.612 kb on - strand, within MPMX19_00793 at 813.863 kb on + strand, within MPMX19_00793 at 813.863 kb on + strand, within MPMX19_00793 at 813.863 kb on + strand, within MPMX19_00793 at 813.863 kb on + strand, within MPMX19_00793 at 813.863 kb on + strand, within MPMX19_00793 at 813.864 kb on - strand, within MPMX19_00793 at 813.864 kb on - strand, within MPMX19_00793 at 813.864 kb on - strand, within MPMX19_00793 at 813.864 kb on - strand, within MPMX19_00793 at 813.864 kb on - strand, within MPMX19_00793 at 813.864 kb on - strand, within MPMX19_00793 at 813.864 kb on - strand, within MPMX19_00793 at 813.917 kb on - strand, within MPMX19_00793 at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.432 kb on + strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.433 kb on - strand at 814.461 kb on + strand at 814.461 kb on + strand at 814.461 kb on + strand at 814.462 kb on - strand at 814.462 kb on - strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.487 kb on + strand at 814.488 kb on - strand at 814.488 kb on - strand at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.577 kb on + strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.578 kb on - strand, within MPMX19_00794 at 814.736 kb on + strand, within MPMX19_00794 at 814.736 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.925 kb on + strand, within MPMX19_00794 at 814.988 kb on + strand, within MPMX19_00794 at 814.988 kb on + strand, within MPMX19_00794 at 815.123 kb on + strand at 815.123 kb on + strand at 815.123 kb on + strand at 815.123 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.150 kb on + strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.151 kb on - strand at 815.247 kb on + strand at 815.247 kb on + strand at 815.247 kb on + strand at 815.248 kb on - strand at 815.248 kb on - strand at 815.248 kb on - strand at 815.295 kb on + strand, within MPMX19_00795 at 815.373 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.382 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.448 kb on + strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.449 kb on - strand, within MPMX19_00795 at 815.553 kb on + strand, within MPMX19_00795 at 815.554 kb on - strand, within MPMX19_00795
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 813,509 + MPMX19_00793 0.47 -1.8 813,518 + MPMX19_00793 0.48 -0.0 813,518 + MPMX19_00793 0.48 +0.6 813,518 + MPMX19_00793 0.48 -1.2 813,518 + MPMX19_00793 0.48 -2.3 813,518 + MPMX19_00793 0.48 -0.8 813,518 + MPMX19_00793 0.48 -1.7 813,518 + MPMX19_00793 0.48 -1.4 813,518 + MPMX19_00793 0.48 -0.0 813,518 + MPMX19_00793 0.48 -0.6 813,518 + MPMX19_00793 0.48 -0.8 813,518 + MPMX19_00793 0.48 -0.6 813,518 + MPMX19_00793 0.48 -2.5 813,518 + MPMX19_00793 0.48 -0.6 813,519 - MPMX19_00793 0.48 -2.2 813,519 - MPMX19_00793 0.48 -1.3 813,519 - MPMX19_00793 0.48 +1.4 813,519 - MPMX19_00793 0.48 +0.4 813,519 - MPMX19_00793 0.48 -1.0 813,519 - MPMX19_00793 0.48 -0.4 813,519 - MPMX19_00793 0.48 -0.5 813,519 - MPMX19_00793 0.48 +1.0 813,519 - MPMX19_00793 0.48 +0.7 813,519 - MPMX19_00793 0.48 -1.8 813,519 - MPMX19_00793 0.48 -1.6 813,519 - MPMX19_00793 0.48 +0.4 813,611 + MPMX19_00793 0.54 -0.9 813,611 + MPMX19_00793 0.54 -0.0 813,611 + MPMX19_00793 0.54 +0.4 813,611 + MPMX19_00793 0.54 +0.5 813,611 + MPMX19_00793 0.54 -0.4 813,611 + MPMX19_00793 0.54 -0.7 813,611 + MPMX19_00793 0.54 -1.0 813,611 + MPMX19_00793 0.54 -1.2 813,611 + MPMX19_00793 0.54 +0.4 813,611 + MPMX19_00793 0.54 -0.0 813,611 + MPMX19_00793 0.54 -1.5 813,611 + MPMX19_00793 0.54 -0.0 813,612 - MPMX19_00793 0.54 -1.6 813,612 - MPMX19_00793 0.54 -1.2 813,612 - MPMX19_00793 0.54 -0.0 813,612 - MPMX19_00793 0.54 -0.2 813,612 - MPMX19_00793 0.54 -1.7 813,612 - MPMX19_00793 0.54 -1.8 813,612 - MPMX19_00793 0.54 +0.3 813,612 - MPMX19_00793 0.54 -1.0 813,612 - MPMX19_00793 0.54 +0.3 813,612 - MPMX19_00793 0.54 -1.2 813,612 - MPMX19_00793 0.54 -0.0 813,612 - MPMX19_00793 0.54 -0.7 813,612 - MPMX19_00793 0.54 -0.2 813,612 - MPMX19_00793 0.54 -0.3 813,863 + MPMX19_00793 0.69 -0.2 813,863 + MPMX19_00793 0.69 -0.2 813,863 + MPMX19_00793 0.69 -0.5 813,863 + MPMX19_00793 0.69 -1.3 813,863 + MPMX19_00793 0.69 -0.9 813,864 - MPMX19_00793 0.69 -1.0 813,864 - MPMX19_00793 0.69 -0.9 813,864 - MPMX19_00793 0.69 +0.2 813,864 - MPMX19_00793 0.69 +0.2 813,864 - MPMX19_00793 0.69 -0.0 813,864 - MPMX19_00793 0.69 +0.8 813,864 - MPMX19_00793 0.69 -0.3 813,917 - MPMX19_00793 0.73 -0.3 814,432 + -0.3 814,432 + -0.3 814,432 + +0.6 814,432 + -0.5 814,432 + +0.7 814,432 + -0.5 814,432 + -0.8 814,432 + -1.2 814,432 + -0.3 814,432 + +0.4 814,432 + -0.3 814,432 + +0.5 814,432 + -0.8 814,432 + +1.2 814,432 + -0.2 814,432 + +1.0 814,432 + -0.4 814,432 + -0.0 814,433 - -1.0 814,433 - +0.2 814,433 - -1.8 814,433 - -1.3 814,461 + -1.2 814,461 + -0.0 814,461 + +0.8 814,462 - -1.3 814,462 - -0.3 814,487 + +0.4 814,487 + -0.7 814,487 + -0.2 814,487 + -1.2 814,487 + -0.0 814,488 - -1.3 814,488 - -1.1 814,577 + MPMX19_00794 0.20 -1.1 814,577 + MPMX19_00794 0.20 -1.3 814,577 + MPMX19_00794 0.20 +0.7 814,577 + MPMX19_00794 0.20 -0.6 814,577 + MPMX19_00794 0.20 -2.4 814,577 + MPMX19_00794 0.20 -0.8 814,578 - MPMX19_00794 0.20 -1.0 814,578 - MPMX19_00794 0.20 -1.8 814,578 - MPMX19_00794 0.20 -1.5 814,736 + MPMX19_00794 0.43 -0.2 814,736 + MPMX19_00794 0.43 -1.3 814,925 + MPMX19_00794 0.71 +0.4 814,925 + MPMX19_00794 0.71 -0.2 814,925 + MPMX19_00794 0.71 -0.3 814,988 + MPMX19_00794 0.80 +0.2 814,988 + MPMX19_00794 0.80 -0.0 815,123 + -1.5 815,123 + -0.5 815,123 + +1.2 815,123 + -1.0 815,150 + -1.0 815,150 + -1.2 815,150 + -0.4 815,150 + -1.2 815,150 + -0.8 815,150 + -1.2 815,150 + +0.7 815,150 + +0.6 815,150 + +0.3 815,150 + -2.3 815,150 + -0.5 815,150 + -0.2 815,150 + +1.0 815,150 + -0.6 815,150 + -0.6 815,150 + -2.1 815,150 + -0.7 815,150 + +0.1 815,150 + -0.9 815,150 + -0.7 815,150 + -1.7 815,150 + -0.7 815,150 + -1.9 815,151 - +0.4 815,151 - -1.4 815,151 - +0.2 815,151 - -0.7 815,151 - +0.7 815,151 - -1.1 815,151 - -0.3 815,151 - -1.0 815,151 - -0.8 815,247 + +1.7 815,247 + -1.5 815,247 + -1.7 815,248 - -1.0 815,248 - -0.0 815,248 - -1.2 815,295 + MPMX19_00795 0.10 -0.6 815,373 + MPMX19_00795 0.15 +0.6 815,382 + MPMX19_00795 0.16 +0.4 815,382 + MPMX19_00795 0.16 +0.6 815,382 + MPMX19_00795 0.16 -1.0 815,448 + MPMX19_00795 0.21 -1.2 815,448 + MPMX19_00795 0.21 -0.7 815,448 + MPMX19_00795 0.21 +0.6 815,448 + MPMX19_00795 0.21 -0.3 815,449 - MPMX19_00795 0.21 +1.0 815,449 - MPMX19_00795 0.21 +0.3 815,449 - MPMX19_00795 0.21 -1.0 815,449 - MPMX19_00795 0.21 +0.6 815,449 - MPMX19_00795 0.21 -0.0 815,449 - MPMX19_00795 0.21 -1.6 815,553 + MPMX19_00795 0.28 +0.4 815,554 - MPMX19_00795 0.28 +0.6
Or see this region's nucleotide sequence