Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00763 and MPMX19_00764 are separated by 261 nucleotides MPMX19_00764 and MPMX19_00765 overlap by 1 nucleotides
MPMX19_00763: MPMX19_00763 - hypothetical protein, at 779,412 to 781,043
_00763
MPMX19_00764: MPMX19_00764 - ECF RNA polymerase sigma factor EcfG, at 781,305 to 781,814
_00764
MPMX19_00765: MPMX19_00765 - hypothetical protein, at 781,814 to 782,770
_00765
Position (kb) 781
782 Strain fitness (log2 ratio) -2
-1
0
1
2 at 780.403 kb on - strand, within MPMX19_00763 at 780.403 kb on - strand, within MPMX19_00763 at 780.423 kb on + strand, within MPMX19_00763 at 780.424 kb on - strand, within MPMX19_00763 at 780.424 kb on - strand, within MPMX19_00763 at 780.501 kb on + strand, within MPMX19_00763 at 780.501 kb on + strand, within MPMX19_00763 at 780.501 kb on + strand, within MPMX19_00763 at 780.501 kb on + strand, within MPMX19_00763 at 780.501 kb on + strand, within MPMX19_00763 at 780.501 kb on + strand, within MPMX19_00763 at 780.501 kb on + strand, within MPMX19_00763 at 780.502 kb on - strand, within MPMX19_00763 at 780.502 kb on - strand, within MPMX19_00763 at 780.502 kb on - strand, within MPMX19_00763 at 780.502 kb on - strand, within MPMX19_00763 at 780.502 kb on - strand, within MPMX19_00763 at 780.502 kb on - strand, within MPMX19_00763 at 780.502 kb on - strand, within MPMX19_00763 at 780.925 kb on - strand at 780.943 kb on - strand at 780.943 kb on - strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.111 kb on + strand at 781.112 kb on - strand at 781.112 kb on - strand at 781.112 kb on - strand at 781.112 kb on - strand at 781.112 kb on - strand at 781.112 kb on - strand at 781.112 kb on - strand at 781.123 kb on + strand at 781.123 kb on + strand at 781.124 kb on - strand at 781.124 kb on - strand at 781.124 kb on - strand at 781.124 kb on - strand at 781.124 kb on - strand at 781.153 kb on + strand at 781.153 kb on + strand at 781.153 kb on + strand at 781.153 kb on + strand at 781.153 kb on + strand at 781.153 kb on + strand at 781.153 kb on + strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.154 kb on - strand at 781.288 kb on - strand at 781.686 kb on + strand, within MPMX19_00764 at 781.686 kb on + strand, within MPMX19_00764 at 781.686 kb on + strand, within MPMX19_00764 at 781.687 kb on - strand, within MPMX19_00764 at 781.687 kb on - strand, within MPMX19_00764 at 781.687 kb on - strand, within MPMX19_00764 at 781.687 kb on - strand, within MPMX19_00764 at 781.793 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 780,403 - MPMX19_00763 0.61 +1.7 780,403 - MPMX19_00763 0.61 -0.9 780,423 + MPMX19_00763 0.62 -0.6 780,424 - MPMX19_00763 0.62 -0.2 780,424 - MPMX19_00763 0.62 +0.3 780,501 + MPMX19_00763 0.67 -1.5 780,501 + MPMX19_00763 0.67 +0.3 780,501 + MPMX19_00763 0.67 -0.7 780,501 + MPMX19_00763 0.67 +1.0 780,501 + MPMX19_00763 0.67 +0.6 780,501 + MPMX19_00763 0.67 +0.4 780,501 + MPMX19_00763 0.67 +1.2 780,502 - MPMX19_00763 0.67 +0.9 780,502 - MPMX19_00763 0.67 +0.8 780,502 - MPMX19_00763 0.67 -1.6 780,502 - MPMX19_00763 0.67 +0.2 780,502 - MPMX19_00763 0.67 -0.8 780,502 - MPMX19_00763 0.67 +1.0 780,502 - MPMX19_00763 0.67 +1.4 780,925 - -1.8 780,943 - +0.0 780,943 - -0.7 781,111 + -0.6 781,111 + -2.0 781,111 + +0.4 781,111 + -0.7 781,111 + -0.2 781,111 + +0.8 781,111 + +0.3 781,112 - +1.1 781,112 - +0.1 781,112 - +2.0 781,112 - -0.7 781,112 - -0.4 781,112 - -0.4 781,112 - -2.4 781,123 + +2.0 781,123 + -0.4 781,124 - -1.0 781,124 - -0.4 781,124 - -0.8 781,124 - -1.4 781,124 - +2.0 781,153 + -2.0 781,153 + -0.8 781,153 + -1.4 781,153 + +0.4 781,153 + +0.7 781,153 + -1.8 781,153 + +0.7 781,154 - +0.5 781,154 - +0.6 781,154 - +0.0 781,154 - +0.4 781,154 - -1.0 781,154 - +0.0 781,154 - -0.4 781,154 - -1.6 781,154 - -1.5 781,154 - -0.8 781,154 - -0.1 781,288 - +0.4 781,686 + MPMX19_00764 0.75 -2.5 781,686 + MPMX19_00764 0.75 -2.1 781,686 + MPMX19_00764 0.75 -0.2 781,687 - MPMX19_00764 0.75 +0.0 781,687 - MPMX19_00764 0.75 -0.6 781,687 - MPMX19_00764 0.75 -0.9 781,687 - MPMX19_00764 0.75 -0.6 781,793 + +0.3
Or see this region's nucleotide sequence