Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00761 and MPMX19_00762 are separated by 145 nucleotides MPMX19_00762 and MPMX19_00763 are separated by 94 nucleotides
MPMX19_00761: MPMX19_00761 - RNA polymerase sigma factor RpoD, at 777,063 to 779,096
_00761
MPMX19_00762: MPMX19_00762 - tRNA-Met, at 779,242 to 779,317
_00762
MPMX19_00763: MPMX19_00763 - hypothetical protein, at 779,412 to 781,043
_00763
Position (kb)
779
780 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.589 kb on + strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.590 kb on - strand, within MPMX19_00763 at 779.755 kb on - strand, within MPMX19_00763 at 780.156 kb on + strand, within MPMX19_00763 at 780.156 kb on + strand, within MPMX19_00763 at 780.156 kb on + strand, within MPMX19_00763 at 780.156 kb on + strand, within MPMX19_00763 at 780.156 kb on + strand, within MPMX19_00763 at 780.157 kb on - strand, within MPMX19_00763 at 780.157 kb on - strand, within MPMX19_00763 at 780.157 kb on - strand, within MPMX19_00763 at 780.157 kb on - strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.271 kb on + strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.272 kb on - strand, within MPMX19_00763 at 780.297 kb on + strand, within MPMX19_00763 at 780.298 kb on - strand, within MPMX19_00763
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 779,589 + MPMX19_00763 0.11 +0.0 779,589 + MPMX19_00763 0.11 -1.0 779,589 + MPMX19_00763 0.11 -1.0 779,589 + MPMX19_00763 0.11 -0.7 779,589 + MPMX19_00763 0.11 -0.4 779,590 - MPMX19_00763 0.11 -0.6 779,590 - MPMX19_00763 0.11 -1.8 779,590 - MPMX19_00763 0.11 -0.9 779,590 - MPMX19_00763 0.11 +0.1 779,755 - MPMX19_00763 0.21 -0.5 780,156 + MPMX19_00763 0.46 +0.8 780,156 + MPMX19_00763 0.46 -1.9 780,156 + MPMX19_00763 0.46 -1.2 780,156 + MPMX19_00763 0.46 -0.4 780,156 + MPMX19_00763 0.46 -1.1 780,157 - MPMX19_00763 0.46 -1.1 780,157 - MPMX19_00763 0.46 +0.6 780,157 - MPMX19_00763 0.46 +0.0 780,157 - MPMX19_00763 0.46 -3.7 780,271 + MPMX19_00763 0.53 -1.2 780,271 + MPMX19_00763 0.53 -0.6 780,271 + MPMX19_00763 0.53 -0.4 780,271 + MPMX19_00763 0.53 +0.0 780,271 + MPMX19_00763 0.53 -0.5 780,271 + MPMX19_00763 0.53 -1.4 780,271 + MPMX19_00763 0.53 -0.9 780,271 + MPMX19_00763 0.53 -0.6 780,271 + MPMX19_00763 0.53 +0.4 780,271 + MPMX19_00763 0.53 +0.6 780,271 + MPMX19_00763 0.53 -2.4 780,271 + MPMX19_00763 0.53 +0.2 780,271 + MPMX19_00763 0.53 -1.3 780,272 - MPMX19_00763 0.53 -1.8 780,272 - MPMX19_00763 0.53 -1.6 780,272 - MPMX19_00763 0.53 +0.4 780,272 - MPMX19_00763 0.53 -0.3 780,272 - MPMX19_00763 0.53 +0.8 780,272 - MPMX19_00763 0.53 +0.0 780,272 - MPMX19_00763 0.53 +0.7 780,272 - MPMX19_00763 0.53 -0.6 780,297 + MPMX19_00763 0.54 -0.2 780,298 - MPMX19_00763 0.54 -1.4
Or see this region's nucleotide sequence