Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00743 and MPMX19_00744 are separated by 103 nucleotides MPMX19_00744 and MPMX19_00745 are separated by 94 nucleotides MPMX19_00745 and MPMX19_00746 are separated by 219 nucleotides MPMX19_00746 and MPMX19_00747 are separated by 260 nucleotides MPMX19_00747 and MPMX19_00748 are separated by 141 nucleotides
MPMX19_00743: MPMX19_00743 - Integration host factor subunit alpha, at 763,142 to 763,474
_00743
MPMX19_00744: MPMX19_00744 - hypothetical protein, at 763,578 to 764,054
_00744
MPMX19_00745: MPMX19_00745 - tRNA-Pro, at 764,149 to 764,225
_00745
MPMX19_00746: MPMX19_00746 - hypothetical protein, at 764,445 to 764,675
_00746
MPMX19_00747: MPMX19_00747 - Organic hydroperoxide resistance protein OhrB, at 764,936 to 765,355
_00747
MPMX19_00748: MPMX19_00748 - Organic hydroperoxide resistance transcriptional regulator, at 765,497 to 765,955
_00748
Position (kb) 764
765 Strain fitness (log2 ratio) -2
-1
0
1
2 at 763.596 kb on + strand at 763.597 kb on - strand at 763.597 kb on - strand at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on + strand, within MPMX19_00744 at 763.645 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.646 kb on - strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.710 kb on + strand, within MPMX19_00744 at 763.711 kb on - strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.761 kb on + strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.762 kb on - strand, within MPMX19_00744 at 763.773 kb on + strand, within MPMX19_00744 at 763.773 kb on + strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 763.774 kb on - strand, within MPMX19_00744 at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.310 kb on + strand at 764.311 kb on - strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.321 kb on + strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.322 kb on - strand at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.517 kb on + strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.518 kb on - strand, within MPMX19_00746 at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.758 kb on + strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.759 kb on - strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.760 kb on + strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.761 kb on - strand at 764.815 kb on + strand at 764.816 kb on - strand at 764.816 kb on - strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.948 kb on + strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 764.949 kb on - strand at 765.093 kb on - strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.292 kb on + strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.293 kb on - strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.305 kb on + strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.306 kb on - strand, within MPMX19_00747 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.554 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.617 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748 at 765.626 kb on + strand, within MPMX19_00748
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 763,596 + -1.3 763,597 - -0.3 763,597 - -0.2 763,645 + MPMX19_00744 0.14 +0.9 763,645 + MPMX19_00744 0.14 -0.3 763,645 + MPMX19_00744 0.14 +2.0 763,645 + MPMX19_00744 0.14 +0.2 763,645 + MPMX19_00744 0.14 -0.5 763,645 + MPMX19_00744 0.14 -0.3 763,645 + MPMX19_00744 0.14 -0.8 763,645 + MPMX19_00744 0.14 -1.4 763,645 + MPMX19_00744 0.14 -0.6 763,645 + MPMX19_00744 0.14 -1.6 763,645 + MPMX19_00744 0.14 -0.4 763,645 + MPMX19_00744 0.14 +0.7 763,645 + MPMX19_00744 0.14 -0.3 763,645 + MPMX19_00744 0.14 -0.6 763,645 + MPMX19_00744 0.14 -0.7 763,645 + MPMX19_00744 0.14 +0.3 763,645 + MPMX19_00744 0.14 -0.9 763,645 - MPMX19_00744 0.14 -0.9 763,646 - MPMX19_00744 0.14 -1.0 763,646 - MPMX19_00744 0.14 -0.8 763,646 - MPMX19_00744 0.14 -2.0 763,646 - MPMX19_00744 0.14 -0.6 763,646 - MPMX19_00744 0.14 -0.1 763,646 - MPMX19_00744 0.14 +0.3 763,646 - MPMX19_00744 0.14 -0.3 763,646 - MPMX19_00744 0.14 -1.0 763,646 - MPMX19_00744 0.14 -1.3 763,646 - MPMX19_00744 0.14 +0.4 763,646 - MPMX19_00744 0.14 -0.7 763,710 + MPMX19_00744 0.28 +0.4 763,710 + MPMX19_00744 0.28 +0.2 763,710 + MPMX19_00744 0.28 -0.1 763,710 + MPMX19_00744 0.28 -0.0 763,711 - MPMX19_00744 0.28 -1.0 763,761 + MPMX19_00744 0.38 -2.5 763,761 + MPMX19_00744 0.38 -0.3 763,761 + MPMX19_00744 0.38 -1.0 763,761 + MPMX19_00744 0.38 -1.1 763,761 + MPMX19_00744 0.38 +0.4 763,761 + MPMX19_00744 0.38 +0.7 763,761 + MPMX19_00744 0.38 -0.4 763,761 + MPMX19_00744 0.38 -1.1 763,762 - MPMX19_00744 0.39 -1.8 763,762 - MPMX19_00744 0.39 -2.2 763,762 - MPMX19_00744 0.39 -1.8 763,762 - MPMX19_00744 0.39 -0.3 763,762 - MPMX19_00744 0.39 -1.6 763,762 - MPMX19_00744 0.39 -1.1 763,773 + MPMX19_00744 0.41 -1.0 763,773 + MPMX19_00744 0.41 -0.0 763,774 - MPMX19_00744 0.41 +0.6 763,774 - MPMX19_00744 0.41 -1.0 763,774 - MPMX19_00744 0.41 -2.3 763,774 - MPMX19_00744 0.41 -1.1 764,310 + -1.0 764,310 + -1.0 764,310 + -0.9 764,310 + +0.4 764,310 + -0.8 764,311 - -1.4 764,321 + -2.5 764,321 + -0.6 764,321 + -0.4 764,321 + -1.4 764,321 + +1.0 764,321 + -0.8 764,321 + +0.9 764,321 + +0.1 764,321 + -0.8 764,321 + -0.4 764,321 + +1.0 764,321 + -0.9 764,321 + -0.8 764,321 + -1.1 764,321 + -0.2 764,321 + -0.4 764,321 + -0.7 764,321 + -1.3 764,321 + +0.1 764,322 - -0.1 764,322 - -1.6 764,322 - -0.6 764,322 - -1.0 764,322 - -1.1 764,322 - -1.8 764,322 - +0.6 764,322 - -0.8 764,322 - -1.7 764,517 + MPMX19_00746 0.31 +0.2 764,517 + MPMX19_00746 0.31 -0.1 764,517 + MPMX19_00746 0.31 +0.6 764,517 + MPMX19_00746 0.31 -1.1 764,517 + MPMX19_00746 0.31 -0.1 764,518 - MPMX19_00746 0.32 +0.2 764,518 - MPMX19_00746 0.32 -1.6 764,518 - MPMX19_00746 0.32 -0.7 764,518 - MPMX19_00746 0.32 -0.5 764,518 - MPMX19_00746 0.32 -1.4 764,518 - MPMX19_00746 0.32 +0.6 764,758 + -0.8 764,758 + -1.1 764,758 + +0.3 764,758 + -0.4 764,758 + +0.5 764,758 + -0.8 764,758 + +1.3 764,758 + -0.6 764,758 + +1.1 764,758 + +0.1 764,758 + -1.0 764,758 + -0.5 764,758 + +0.0 764,758 + -0.3 764,758 + -0.8 764,758 + -0.8 764,758 + -0.4 764,758 + -1.3 764,758 + +1.3 764,758 + -1.3 764,759 - +0.4 764,759 - -0.9 764,759 - -1.8 764,759 - -0.5 764,759 - -0.8 764,759 - -1.0 764,759 - -0.1 764,759 - -1.6 764,759 - +2.4 764,759 - -1.1 764,759 - -1.9 764,759 - -0.5 764,759 - -0.3 764,759 - -0.6 764,759 - +0.7 764,759 - -0.7 764,759 - +0.3 764,759 - +2.0 764,759 - -0.1 764,759 - -1.1 764,760 + -1.3 764,760 + -1.1 764,760 + -0.6 764,760 + +1.0 764,760 + -0.0 764,760 + -1.0 764,760 + -0.6 764,760 + -0.3 764,760 + -0.8 764,760 + +0.7 764,760 + -1.3 764,760 + -1.0 764,761 - -1.1 764,761 - -0.8 764,761 - -2.2 764,761 - -0.3 764,761 - +0.4 764,761 - -1.8 764,761 - -1.0 764,761 - +1.0 764,761 - -1.4 764,761 - +0.0 764,761 - -1.4 764,761 - +0.5 764,761 - +1.4 764,761 - -0.7 764,761 - +0.4 764,761 - +2.0 764,761 - -2.2 764,761 - -0.3 764,815 + -0.9 764,816 - -1.1 764,816 - -0.7 764,948 + -0.5 764,948 + -0.6 764,948 + -0.2 764,949 - -0.3 764,949 - -1.4 764,949 - -1.2 764,949 - -0.4 764,949 - +0.3 764,949 - +0.1 765,093 - MPMX19_00747 0.37 -0.3 765,292 + MPMX19_00747 0.85 -0.5 765,292 + MPMX19_00747 0.85 +0.6 765,292 + MPMX19_00747 0.85 +0.0 765,292 + MPMX19_00747 0.85 +0.4 765,293 - MPMX19_00747 0.85 +0.1 765,293 - MPMX19_00747 0.85 -0.8 765,293 - MPMX19_00747 0.85 -0.6 765,293 - MPMX19_00747 0.85 +0.0 765,293 - MPMX19_00747 0.85 -0.3 765,305 + MPMX19_00747 0.88 +0.1 765,305 + MPMX19_00747 0.88 -0.5 765,305 + MPMX19_00747 0.88 -1.9 765,305 + MPMX19_00747 0.88 -1.6 765,305 + MPMX19_00747 0.88 -0.7 765,306 - MPMX19_00747 0.88 -0.3 765,306 - MPMX19_00747 0.88 -0.2 765,306 - MPMX19_00747 0.88 +0.2 765,306 - MPMX19_00747 0.88 -1.0 765,554 + MPMX19_00748 0.12 -1.6 765,554 + MPMX19_00748 0.12 -1.2 765,554 + MPMX19_00748 0.12 +0.6 765,554 + MPMX19_00748 0.12 -1.2 765,554 + MPMX19_00748 0.12 +0.4 765,617 + MPMX19_00748 0.26 -1.6 765,617 + MPMX19_00748 0.26 -0.6 765,617 + MPMX19_00748 0.26 -0.8 765,617 + MPMX19_00748 0.26 -1.1 765,617 + MPMX19_00748 0.26 -1.6 765,617 + MPMX19_00748 0.26 -2.2 765,617 + MPMX19_00748 0.26 +0.2 765,626 + MPMX19_00748 0.28 +0.0 765,626 + MPMX19_00748 0.28 +0.6
Or see this region's nucleotide sequence