Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00717 and MPMX19_00718 are separated by 41 nucleotides MPMX19_00718 and MPMX19_00719 are separated by 374 nucleotides MPMX19_00719 and MPMX19_00720 are separated by 7 nucleotides
MPMX19_00717: MPMX19_00717 - hypothetical protein, at 740,479 to 741,300
_00717
MPMX19_00718: MPMX19_00718 - hypothetical protein, at 741,342 to 743,027
_00718
MPMX19_00719: MPMX19_00719 - Protein ElaA, at 743,402 to 743,884
_00719
MPMX19_00720: MPMX19_00720 - hypothetical protein, at 743,892 to 744,302
_00720
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.446 kb on + strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.447 kb on - strand at 740.464 kb on - strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.485 kb on + strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.486 kb on - strand at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.743 kb on + strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.744 kb on - strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.809 kb on + strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.810 kb on - strand, within MPMX19_00717 at 740.899 kb on + strand, within MPMX19_00717 at 740.899 kb on + strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 740.900 kb on - strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.217 kb on + strand, within MPMX19_00717 at 741.218 kb on - strand at 741.218 kb on - strand at 741.218 kb on - strand at 742.417 kb on - strand, within MPMX19_00718 at 742.463 kb on - strand, within MPMX19_00718 at 742.463 kb on - strand, within MPMX19_00718 at 742.463 kb on - strand, within MPMX19_00718 at 742.777 kb on + strand, within MPMX19_00718 at 742.777 kb on + strand, within MPMX19_00718 at 742.814 kb on - strand, within MPMX19_00718 at 742.814 kb on - strand, within MPMX19_00718 at 742.882 kb on + strand at 742.882 kb on + strand at 742.882 kb on + strand at 742.882 kb on + strand at 742.882 kb on + strand at 742.883 kb on - strand at 742.883 kb on - strand at 742.883 kb on - strand at 742.933 kb on + strand at 742.933 kb on + strand at 743.044 kb on + strand at 743.044 kb on + strand at 743.044 kb on + strand at 743.044 kb on + strand at 743.045 kb on - strand at 743.045 kb on - strand at 743.045 kb on - strand at 743.045 kb on - strand at 743.098 kb on + strand at 743.098 kb on + strand at 743.098 kb on + strand at 743.099 kb on - strand at 743.141 kb on + strand at 743.142 kb on - strand at 743.142 kb on - strand at 743.177 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.181 kb on + strand at 743.182 kb on - strand at 743.203 kb on + strand at 743.204 kb on - strand at 743.207 kb on + strand at 743.207 kb on + strand at 743.214 kb on + strand at 743.215 kb on - strand at 743.215 kb on - strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.239 kb on + strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.240 kb on - strand at 743.270 kb on - strand at 743.349 kb on + strand at 743.349 kb on + strand at 743.349 kb on + strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.350 kb on - strand at 743.449 kb on - strand at 743.449 kb on - strand at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on + strand, within MPMX19_00719 at 743.484 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.485 kb on - strand, within MPMX19_00719 at 743.730 kb on + strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.731 kb on - strand, within MPMX19_00719 at 743.767 kb on - strand, within MPMX19_00719 at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.917 kb on + strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 743.918 kb on - strand at 744.025 kb on + strand, within MPMX19_00720 at 744.025 kb on + strand, within MPMX19_00720 at 744.025 kb on + strand, within MPMX19_00720 at 744.025 kb on + strand, within MPMX19_00720 at 744.026 kb on - strand, within MPMX19_00720
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 740,446 + +0.2 740,446 + -0.9 740,446 + -1.3 740,446 + -0.9 740,446 + -0.7 740,446 + +0.1 740,446 + -1.4 740,446 + -1.1 740,446 + -0.4 740,446 + -1.4 740,446 + -0.1 740,446 + -0.7 740,446 + -0.2 740,446 + -1.3 740,446 + -0.9 740,447 - +1.4 740,447 - +0.3 740,447 - -0.7 740,447 - +0.1 740,447 - -0.2 740,447 - +0.0 740,447 - -1.0 740,447 - -0.2 740,447 - -0.2 740,447 - -1.0 740,447 - -1.1 740,447 - -0.2 740,447 - -1.0 740,447 - -0.3 740,447 - +2.0 740,447 - +0.5 740,447 - +0.8 740,447 - +0.4 740,447 - +0.4 740,464 - +0.2 740,485 + +0.4 740,485 + -0.7 740,485 + -0.0 740,485 + +1.8 740,485 + +0.4 740,485 + +0.3 740,485 + +0.3 740,485 + -0.3 740,485 + -2.0 740,485 + -2.7 740,485 + +0.9 740,485 + +0.4 740,485 + -0.6 740,485 + -0.8 740,486 - +1.6 740,486 - +0.4 740,486 - -1.1 740,486 - +0.5 740,486 - -2.6 740,486 - -0.3 740,486 - +0.9 740,486 - +0.4 740,486 - -0.3 740,486 - +0.7 740,486 - -1.0 740,486 - +1.0 740,486 - +0.4 740,486 - -0.5 740,486 - -0.4 740,743 + MPMX19_00717 0.32 -0.9 740,743 + MPMX19_00717 0.32 +0.0 740,743 + MPMX19_00717 0.32 +0.0 740,743 + MPMX19_00717 0.32 -1.1 740,744 - MPMX19_00717 0.32 +0.7 740,744 - MPMX19_00717 0.32 -0.3 740,744 - MPMX19_00717 0.32 -0.4 740,744 - MPMX19_00717 0.32 -1.0 740,744 - MPMX19_00717 0.32 +0.0 740,744 - MPMX19_00717 0.32 -0.4 740,809 + MPMX19_00717 0.40 -1.0 740,809 + MPMX19_00717 0.40 -0.6 740,809 + MPMX19_00717 0.40 -0.3 740,809 + MPMX19_00717 0.40 -0.1 740,809 + MPMX19_00717 0.40 +0.0 740,809 + MPMX19_00717 0.40 +0.4 740,809 + MPMX19_00717 0.40 -1.3 740,809 + MPMX19_00717 0.40 -0.6 740,809 + MPMX19_00717 0.40 +0.6 740,809 + MPMX19_00717 0.40 -0.8 740,810 - MPMX19_00717 0.40 +0.4 740,810 - MPMX19_00717 0.40 +1.7 740,810 - MPMX19_00717 0.40 +0.7 740,810 - MPMX19_00717 0.40 +2.0 740,899 + MPMX19_00717 0.51 -1.1 740,899 + MPMX19_00717 0.51 +1.4 740,900 - MPMX19_00717 0.51 +0.5 740,900 - MPMX19_00717 0.51 -1.3 740,900 - MPMX19_00717 0.51 -0.5 741,217 + MPMX19_00717 0.90 -0.7 741,217 + MPMX19_00717 0.90 +0.0 741,217 + MPMX19_00717 0.90 -0.1 741,217 + MPMX19_00717 0.90 -0.3 741,218 - +0.4 741,218 - -0.4 741,218 - -2.0 742,417 - MPMX19_00718 0.64 -1.0 742,463 - MPMX19_00718 0.66 -2.0 742,463 - MPMX19_00718 0.66 -1.6 742,463 - MPMX19_00718 0.66 -0.4 742,777 + MPMX19_00718 0.85 -1.3 742,777 + MPMX19_00718 0.85 -1.1 742,814 - MPMX19_00718 0.87 +0.2 742,814 - MPMX19_00718 0.87 -0.6 742,882 + -0.1 742,882 + +0.3 742,882 + -0.9 742,882 + +0.3 742,882 + +1.0 742,883 - -0.4 742,883 - +1.2 742,883 - -0.8 742,933 + -0.8 742,933 + -0.3 743,044 + -1.3 743,044 + +2.0 743,044 + -0.2 743,044 + +0.0 743,045 - +0.9 743,045 - -1.2 743,045 - -0.3 743,045 - -0.2 743,098 + +0.2 743,098 + -1.6 743,098 + -0.7 743,099 - -1.4 743,141 + +0.0 743,142 - -1.0 743,142 - -1.7 743,177 + +0.7 743,181 + +1.2 743,181 + -0.1 743,181 + -0.8 743,181 + -1.1 743,181 + +0.2 743,181 + -0.7 743,182 - -0.5 743,203 + -1.7 743,204 - -2.3 743,207 + -0.2 743,207 + -1.2 743,214 + -3.3 743,215 - +0.2 743,215 - -0.1 743,239 + -0.7 743,239 + -0.9 743,239 + -0.4 743,239 + -0.4 743,239 + -0.2 743,239 + -0.3 743,239 + +1.2 743,239 + +0.3 743,239 + -0.1 743,240 - -1.8 743,240 - -0.1 743,240 - +1.5 743,240 - -0.1 743,240 - -2.2 743,270 - -0.8 743,349 + -0.6 743,349 + -0.9 743,349 + +0.0 743,350 - +2.0 743,350 - -0.2 743,350 - -0.4 743,350 - +1.0 743,350 - +0.2 743,350 - -2.1 743,449 - +0.0 743,449 - -0.1 743,484 + MPMX19_00719 0.17 +0.3 743,484 + MPMX19_00719 0.17 -0.6 743,484 + MPMX19_00719 0.17 +1.0 743,484 + MPMX19_00719 0.17 -0.9 743,484 + MPMX19_00719 0.17 -0.2 743,484 - MPMX19_00719 0.17 +0.3 743,485 - MPMX19_00719 0.17 -1.4 743,485 - MPMX19_00719 0.17 -0.8 743,485 - MPMX19_00719 0.17 +0.4 743,485 - MPMX19_00719 0.17 -1.0 743,485 - MPMX19_00719 0.17 -0.4 743,485 - MPMX19_00719 0.17 +1.7 743,485 - MPMX19_00719 0.17 -0.4 743,485 - MPMX19_00719 0.17 +0.6 743,730 + MPMX19_00719 0.68 +1.8 743,731 - MPMX19_00719 0.68 -0.7 743,731 - MPMX19_00719 0.68 +0.9 743,731 - MPMX19_00719 0.68 -0.6 743,731 - MPMX19_00719 0.68 +0.8 743,731 - MPMX19_00719 0.68 +0.6 743,731 - MPMX19_00719 0.68 +1.2 743,767 - MPMX19_00719 0.76 +0.1 743,917 + -0.7 743,917 + -1.7 743,917 + +0.1 743,917 + -0.8 743,917 + -0.7 743,917 + +0.0 743,917 + -2.5 743,917 + -1.4 743,917 + -0.8 743,917 + -0.3 743,917 + -0.3 743,917 + -1.8 743,917 + +0.0 743,917 + +0.2 743,917 + +1.0 743,917 + -1.1 743,917 + -3.4 743,917 + +0.5 743,918 - +0.2 743,918 - -1.0 743,918 - -0.6 743,918 - +0.0 743,918 - -0.6 743,918 - -0.4 743,918 - -0.8 743,918 - -0.1 743,918 - -1.3 743,918 - -0.7 743,918 - -2.1 743,918 - -0.6 743,918 - +0.1 743,918 - -0.9 743,918 - -1.2 743,918 - -1.7 743,918 - +0.0 743,918 - -1.1 743,918 - +0.8 743,918 - -0.3 743,918 - -0.7 743,918 - -1.4 743,918 - +0.3 743,918 - -1.6 743,918 - -0.2 743,918 - -1.4 743,918 - -1.1 743,918 - -0.3 743,918 - -0.5 743,918 - -0.2 743,918 - -0.1 743,918 - -0.4 743,918 - -1.1 743,918 - +0.7 743,918 - -0.6 744,025 + MPMX19_00720 0.32 -0.7 744,025 + MPMX19_00720 0.32 -2.3 744,025 + MPMX19_00720 0.32 +0.0 744,025 + MPMX19_00720 0.32 +0.7 744,026 - MPMX19_00720 0.33 -1.9
Or see this region's nucleotide sequence