Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00696 and MPMX19_00697 are separated by 3 nucleotides MPMX19_00697 and MPMX19_00698 overlap by 4 nucleotides
MPMX19_00696: MPMX19_00696 - Crossover junction endodeoxyribonuclease RuvC, at 717,852 to 718,940
_00696
MPMX19_00697: MPMX19_00697 - Holliday junction ATP-dependent DNA helicase RuvA, at 718,944 to 719,570
_00697
MPMX19_00698: MPMX19_00698 - Holliday junction ATP-dependent DNA helicase RuvB, at 719,567 to 720,640
_00698
Position (kb) 718
719
720 Strain fitness (log2 ratio) -2
-1
0
1
2 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.388 kb on + strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.389 kb on - strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.631 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 718.633 kb on + strand, within MPMX19_00696 at 719.019 kb on + strand, within MPMX19_00697 at 719.460 kb on + strand, within MPMX19_00697 at 719.923 kb on + strand, within MPMX19_00698 at 720.119 kb on + strand, within MPMX19_00698 at 720.396 kb on - strand, within MPMX19_00698 at 720.479 kb on + strand, within MPMX19_00698
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 718,388 + MPMX19_00696 0.49 +0.7 718,388 + MPMX19_00696 0.49 +0.0 718,388 + MPMX19_00696 0.49 -1.1 718,388 + MPMX19_00696 0.49 +0.1 718,388 + MPMX19_00696 0.49 -2.6 718,388 + MPMX19_00696 0.49 -1.1 718,388 + MPMX19_00696 0.49 -0.3 718,388 + MPMX19_00696 0.49 -0.8 718,388 + MPMX19_00696 0.49 -0.3 718,388 + MPMX19_00696 0.49 -0.6 718,388 + MPMX19_00696 0.49 -1.1 718,389 - MPMX19_00696 0.49 +1.6 718,389 - MPMX19_00696 0.49 -0.6 718,389 - MPMX19_00696 0.49 +0.7 718,389 - MPMX19_00696 0.49 +1.0 718,389 - MPMX19_00696 0.49 -1.0 718,389 - MPMX19_00696 0.49 +0.2 718,389 - MPMX19_00696 0.49 -0.6 718,631 + MPMX19_00696 0.72 -0.6 718,631 + MPMX19_00696 0.72 -0.6 718,631 + MPMX19_00696 0.72 -1.1 718,631 + MPMX19_00696 0.72 -0.3 718,631 + MPMX19_00696 0.72 +0.4 718,631 + MPMX19_00696 0.72 +2.0 718,631 + MPMX19_00696 0.72 -0.6 718,631 + MPMX19_00696 0.72 +0.4 718,631 + MPMX19_00696 0.72 -0.6 718,633 + MPMX19_00696 0.72 -0.6 718,633 + MPMX19_00696 0.72 -0.1 718,633 + MPMX19_00696 0.72 +0.0 719,019 + MPMX19_00697 0.12 -0.6 719,460 + MPMX19_00697 0.82 +0.4 719,923 + MPMX19_00698 0.33 +0.7 720,119 + MPMX19_00698 0.51 -0.8 720,396 - MPMX19_00698 0.77 +1.0 720,479 + MPMX19_00698 0.85 +0.0
Or see this region's nucleotide sequence