Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00665

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00663 and MPMX19_00664 are separated by 44 nucleotidesMPMX19_00664 and MPMX19_00665 are separated by 130 nucleotidesMPMX19_00665 and MPMX19_00666 are separated by 10 nucleotidesMPMX19_00666 and MPMX19_00667 are separated by 324 nucleotides MPMX19_00663: MPMX19_00663 - hypothetical protein, at 686,891 to 687,526 _00663 MPMX19_00664: MPMX19_00664 - hypothetical protein, at 687,571 to 687,858 _00664 MPMX19_00665: MPMX19_00665 - hypothetical protein, at 687,989 to 688,423 _00665 MPMX19_00666: MPMX19_00666 - hypothetical protein, at 688,434 to 688,844 _00666 MPMX19_00667: MPMX19_00667 - Single-stranded-DNA-specific exonuclease RecJ, at 689,169 to 690,965 _00667 Position (kb) 687 688 689Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 687.055 kb on - strand, within MPMX19_00663at 687.059 kb on + strand, within MPMX19_00663at 687.060 kb on - strand, within MPMX19_00663at 687.060 kb on - strand, within MPMX19_00663at 687.244 kb on + strand, within MPMX19_00663at 687.250 kb on + strand, within MPMX19_00663at 687.437 kb on + strand, within MPMX19_00663at 687.542 kb on + strandat 687.576 kb on - strandat 687.632 kb on + strand, within MPMX19_00664at 687.633 kb on - strand, within MPMX19_00664at 687.794 kb on + strand, within MPMX19_00664at 687.794 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.827 kb on - strand, within MPMX19_00664at 687.843 kb on + strandat 687.880 kb on - strandat 688.004 kb on + strandat 688.008 kb on + strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.050 kb on + strand, within MPMX19_00665at 688.055 kb on + strand, within MPMX19_00665at 688.055 kb on + strand, within MPMX19_00665at 688.056 kb on - strand, within MPMX19_00665at 688.077 kb on - strand, within MPMX19_00665at 688.179 kb on - strand, within MPMX19_00665at 688.237 kb on - strand, within MPMX19_00665at 688.237 kb on - strand, within MPMX19_00665at 688.426 kb on + strandat 688.427 kb on - strandat 688.427 kb on - strandat 688.445 kb on - strandat 688.538 kb on + strand, within MPMX19_00666at 688.540 kb on + strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.579 kb on + strand, within MPMX19_00666at 688.580 kb on - strand, within MPMX19_00666at 688.659 kb on + strand, within MPMX19_00666at 688.659 kb on + strand, within MPMX19_00666at 688.660 kb on - strand, within MPMX19_00666at 688.660 kb on - strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.817 kb on + strandat 688.817 kb on + strandat 688.818 kb on - strandat 688.818 kb on - strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.820 kb on - strandat 688.820 kb on - strandat 688.820 kb on - strandat 688.820 kb on - strandat 688.838 kb on + strandat 688.838 kb on + strandat 688.839 kb on - strandat 688.839 kb on - strandat 688.848 kb on + strandat 688.898 kb on + strandat 688.898 kb on - strandat 688.909 kb on + strandat 688.909 kb on + strandat 688.911 kb on + strandat 688.920 kb on - strandat 688.944 kb on + strandat 688.944 kb on + strandat 688.945 kb on - strandat 688.946 kb on + strandat 688.948 kb on + strandat 688.949 kb on - strandat 689.014 kb on + strandat 689.014 kb on + strandat 689.014 kb on + strandat 689.014 kb on + strandat 689.014 kb on + strandat 689.015 kb on - strandat 689.015 kb on - strandat 689.126 kb on + strandat 689.126 kb on + strandat 689.126 kb on + strandat 689.126 kb on + strandat 689.126 kb on + strandat 689.126 kb on + strandat 689.126 kb on + strandat 689.127 kb on - strandat 689.127 kb on - strandat 689.127 kb on - strandat 689.127 kb on - strandat 689.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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687,055 - MPMX19_00663 0.26 -1.1
687,059 + MPMX19_00663 0.26 -0.3
687,060 - MPMX19_00663 0.27 -0.3
687,060 - MPMX19_00663 0.27 -0.3
687,244 + MPMX19_00663 0.56 -1.7
687,250 + MPMX19_00663 0.56 -1.5
687,437 + MPMX19_00663 0.86 -0.4
687,542 + -0.8
687,576 - -1.3
687,632 + MPMX19_00664 0.21 -0.8
687,633 - MPMX19_00664 0.22 -0.3
687,794 + MPMX19_00664 0.77 +0.1
687,794 + MPMX19_00664 0.77 -0.8
687,798 + MPMX19_00664 0.79 -1.2
687,798 + MPMX19_00664 0.79 -0.9
687,798 + MPMX19_00664 0.79 -2.6
687,827 - MPMX19_00664 0.89 +0.2
687,843 + +0.4
687,880 - -1.0
688,004 + +0.2
688,008 + -0.8
688,011 - -0.8
688,011 - -1.6
688,011 - -0.1
688,011 - -1.1
688,050 + MPMX19_00665 0.14 -1.7
688,055 + MPMX19_00665 0.15 -1.1
688,055 + MPMX19_00665 0.15 -1.1
688,056 - MPMX19_00665 0.15 -1.4
688,077 - MPMX19_00665 0.20 +0.8
688,179 - MPMX19_00665 0.44 -1.4
688,237 - MPMX19_00665 0.57 -0.3
688,237 - MPMX19_00665 0.57 +0.1
688,426 + -0.1
688,427 - -1.3
688,427 - -0.6
688,445 - -2.4
688,538 + MPMX19_00666 0.25 -0.9
688,540 + MPMX19_00666 0.26 +0.2
688,541 - MPMX19_00666 0.26 -0.6
688,541 - MPMX19_00666 0.26 -0.3
688,541 - MPMX19_00666 0.26 -0.7
688,541 - MPMX19_00666 0.26 +0.8
688,579 + MPMX19_00666 0.35 -1.0
688,580 - MPMX19_00666 0.36 +0.4
688,659 + MPMX19_00666 0.55 -0.6
688,659 + MPMX19_00666 0.55 -1.0
688,660 - MPMX19_00666 0.55 -2.2
688,660 - MPMX19_00666 0.55 -1.3
688,762 + MPMX19_00666 0.80 -0.3
688,762 + MPMX19_00666 0.80 -0.3
688,762 + MPMX19_00666 0.80 -1.4
688,762 + MPMX19_00666 0.80 -1.0
688,762 + MPMX19_00666 0.80 +0.7
688,762 + MPMX19_00666 0.80 -0.6
688,762 + MPMX19_00666 0.80 +1.4
688,762 + MPMX19_00666 0.80 -1.3
688,762 + MPMX19_00666 0.80 -0.2
688,762 + MPMX19_00666 0.80 -1.1
688,762 + MPMX19_00666 0.80 -0.3
688,762 + MPMX19_00666 0.80 -1.6
688,762 + MPMX19_00666 0.80 -0.7
688,762 + MPMX19_00666 0.80 -0.4
688,762 + MPMX19_00666 0.80 -0.4
688,763 - MPMX19_00666 0.80 -0.4
688,763 - MPMX19_00666 0.80 +1.0
688,763 - MPMX19_00666 0.80 -1.6
688,763 - MPMX19_00666 0.80 +1.6
688,763 - MPMX19_00666 0.80 -1.0
688,763 - MPMX19_00666 0.80 -1.1
688,763 - MPMX19_00666 0.80 -0.8
688,763 - MPMX19_00666 0.80 -1.1
688,766 + MPMX19_00666 0.81 -0.2
688,766 + MPMX19_00666 0.81 -0.3
688,766 + MPMX19_00666 0.81 -0.3
688,766 + MPMX19_00666 0.81 +0.0
688,766 + MPMX19_00666 0.81 -0.7
688,817 + -1.1
688,817 + +0.4
688,818 - +1.0
688,818 - -0.2
688,819 + +0.4
688,819 + -1.7
688,819 + +0.4
688,819 + +1.0
688,819 + -0.6
688,819 + +0.4
688,819 + +0.4
688,820 - -2.0
688,820 - -1.3
688,820 - -1.0
688,820 - +0.0
688,838 + -0.6
688,838 + +0.6
688,839 - +0.0
688,839 - -1.1
688,848 + -0.8
688,898 + +0.3
688,898 - -2.0
688,909 + +2.0
688,909 + +1.6
688,911 + +0.4
688,920 - -1.4
688,944 + +0.0
688,944 + +0.5
688,945 - -2.9
688,946 + +0.2
688,948 + +0.3
688,949 - +0.8
689,014 + +1.0
689,014 + -1.6
689,014 + +0.4
689,014 + -0.7
689,014 + -3.1
689,015 - -0.3
689,015 - -1.3
689,126 + -1.8
689,126 + +0.8
689,126 + -0.6
689,126 + +0.4
689,126 + -0.4
689,126 + -0.2
689,126 + -1.1
689,127 - -0.8
689,127 - +0.0
689,127 - -0.0
689,127 - +0.6
689,127 - +0.4

Or see this region's nucleotide sequence