Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00664

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00663 and MPMX19_00664 are separated by 44 nucleotidesMPMX19_00664 and MPMX19_00665 are separated by 130 nucleotidesMPMX19_00665 and MPMX19_00666 are separated by 10 nucleotides MPMX19_00663: MPMX19_00663 - hypothetical protein, at 686,891 to 687,526 _00663 MPMX19_00664: MPMX19_00664 - hypothetical protein, at 687,571 to 687,858 _00664 MPMX19_00665: MPMX19_00665 - hypothetical protein, at 687,989 to 688,423 _00665 MPMX19_00666: MPMX19_00666 - hypothetical protein, at 688,434 to 688,844 _00666 Position (kb) 687 688Strain fitness (log2 ratio) -2 -1 0 1at 686.593 kb on + strandat 686.594 kb on - strandat 686.594 kb on - strandat 686.610 kb on + strandat 686.610 kb on + strandat 686.610 kb on + strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.611 kb on - strandat 686.640 kb on - strandat 686.640 kb on - strandat 686.655 kb on + strandat 686.655 kb on + strandat 686.656 kb on - strandat 686.735 kb on - strandat 686.737 kb on + strandat 686.738 kb on - strandat 686.745 kb on - strandat 686.775 kb on + strandat 686.919 kb on + strandat 686.927 kb on - strandat 686.982 kb on - strand, within MPMX19_00663at 686.982 kb on - strand, within MPMX19_00663at 686.982 kb on - strand, within MPMX19_00663at 687.055 kb on - strand, within MPMX19_00663at 687.059 kb on + strand, within MPMX19_00663at 687.060 kb on - strand, within MPMX19_00663at 687.060 kb on - strand, within MPMX19_00663at 687.244 kb on + strand, within MPMX19_00663at 687.250 kb on + strand, within MPMX19_00663at 687.437 kb on + strand, within MPMX19_00663at 687.542 kb on + strandat 687.576 kb on - strandat 687.632 kb on + strand, within MPMX19_00664at 687.633 kb on - strand, within MPMX19_00664at 687.794 kb on + strand, within MPMX19_00664at 687.794 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.798 kb on + strand, within MPMX19_00664at 687.827 kb on - strand, within MPMX19_00664at 687.843 kb on + strandat 687.880 kb on - strandat 688.004 kb on + strandat 688.008 kb on + strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.011 kb on - strandat 688.050 kb on + strand, within MPMX19_00665at 688.055 kb on + strand, within MPMX19_00665at 688.055 kb on + strand, within MPMX19_00665at 688.056 kb on - strand, within MPMX19_00665at 688.077 kb on - strand, within MPMX19_00665at 688.179 kb on - strand, within MPMX19_00665at 688.237 kb on - strand, within MPMX19_00665at 688.237 kb on - strand, within MPMX19_00665at 688.426 kb on + strandat 688.427 kb on - strandat 688.427 kb on - strandat 688.445 kb on - strandat 688.538 kb on + strand, within MPMX19_00666at 688.540 kb on + strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.541 kb on - strand, within MPMX19_00666at 688.579 kb on + strand, within MPMX19_00666at 688.580 kb on - strand, within MPMX19_00666at 688.659 kb on + strand, within MPMX19_00666at 688.659 kb on + strand, within MPMX19_00666at 688.660 kb on - strand, within MPMX19_00666at 688.660 kb on - strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.762 kb on + strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.763 kb on - strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.766 kb on + strand, within MPMX19_00666at 688.817 kb on + strandat 688.817 kb on + strandat 688.818 kb on - strandat 688.818 kb on - strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.819 kb on + strandat 688.820 kb on - strandat 688.820 kb on - strandat 688.820 kb on - strandat 688.820 kb on - strandat 688.838 kb on + strandat 688.838 kb on + strandat 688.839 kb on - strandat 688.839 kb on - strandat 688.848 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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686,593 + -1.0
686,594 - +1.4
686,594 - -0.1
686,610 + +0.4
686,610 + -0.6
686,610 + +0.4
686,611 - -0.6
686,611 - -0.9
686,611 - -0.4
686,611 - -0.9
686,611 - -0.0
686,611 - -1.0
686,640 - -0.3
686,640 - -1.4
686,655 + -0.3
686,655 + +0.6
686,656 - +1.0
686,735 - -2.1
686,737 + -0.4
686,738 - -0.8
686,745 - +0.0
686,775 + +1.6
686,919 + +0.3
686,927 - -0.2
686,982 - MPMX19_00663 0.14 +0.6
686,982 - MPMX19_00663 0.14 -0.9
686,982 - MPMX19_00663 0.14 +0.2
687,055 - MPMX19_00663 0.26 -1.1
687,059 + MPMX19_00663 0.26 -0.3
687,060 - MPMX19_00663 0.27 -0.3
687,060 - MPMX19_00663 0.27 -0.3
687,244 + MPMX19_00663 0.56 -1.7
687,250 + MPMX19_00663 0.56 -1.5
687,437 + MPMX19_00663 0.86 -0.4
687,542 + -0.8
687,576 - -1.3
687,632 + MPMX19_00664 0.21 -0.8
687,633 - MPMX19_00664 0.22 -0.3
687,794 + MPMX19_00664 0.77 +0.1
687,794 + MPMX19_00664 0.77 -0.8
687,798 + MPMX19_00664 0.79 -1.2
687,798 + MPMX19_00664 0.79 -0.9
687,798 + MPMX19_00664 0.79 -2.6
687,827 - MPMX19_00664 0.89 +0.2
687,843 + +0.4
687,880 - -1.0
688,004 + +0.2
688,008 + -0.8
688,011 - -0.8
688,011 - -1.6
688,011 - -0.1
688,011 - -1.1
688,050 + MPMX19_00665 0.14 -1.7
688,055 + MPMX19_00665 0.15 -1.1
688,055 + MPMX19_00665 0.15 -1.1
688,056 - MPMX19_00665 0.15 -1.4
688,077 - MPMX19_00665 0.20 +0.8
688,179 - MPMX19_00665 0.44 -1.4
688,237 - MPMX19_00665 0.57 -0.3
688,237 - MPMX19_00665 0.57 +0.1
688,426 + -0.1
688,427 - -1.3
688,427 - -0.6
688,445 - -2.4
688,538 + MPMX19_00666 0.25 -0.9
688,540 + MPMX19_00666 0.26 +0.2
688,541 - MPMX19_00666 0.26 -0.6
688,541 - MPMX19_00666 0.26 -0.3
688,541 - MPMX19_00666 0.26 -0.7
688,541 - MPMX19_00666 0.26 +0.8
688,579 + MPMX19_00666 0.35 -1.0
688,580 - MPMX19_00666 0.36 +0.4
688,659 + MPMX19_00666 0.55 -0.6
688,659 + MPMX19_00666 0.55 -1.0
688,660 - MPMX19_00666 0.55 -2.2
688,660 - MPMX19_00666 0.55 -1.3
688,762 + MPMX19_00666 0.80 -0.3
688,762 + MPMX19_00666 0.80 -0.3
688,762 + MPMX19_00666 0.80 -1.4
688,762 + MPMX19_00666 0.80 -1.0
688,762 + MPMX19_00666 0.80 +0.7
688,762 + MPMX19_00666 0.80 -0.6
688,762 + MPMX19_00666 0.80 +1.4
688,762 + MPMX19_00666 0.80 -1.3
688,762 + MPMX19_00666 0.80 -0.2
688,762 + MPMX19_00666 0.80 -1.1
688,762 + MPMX19_00666 0.80 -0.3
688,762 + MPMX19_00666 0.80 -1.6
688,762 + MPMX19_00666 0.80 -0.7
688,762 + MPMX19_00666 0.80 -0.4
688,762 + MPMX19_00666 0.80 -0.4
688,763 - MPMX19_00666 0.80 -0.4
688,763 - MPMX19_00666 0.80 +1.0
688,763 - MPMX19_00666 0.80 -1.6
688,763 - MPMX19_00666 0.80 +1.6
688,763 - MPMX19_00666 0.80 -1.0
688,763 - MPMX19_00666 0.80 -1.1
688,763 - MPMX19_00666 0.80 -0.8
688,763 - MPMX19_00666 0.80 -1.1
688,766 + MPMX19_00666 0.81 -0.2
688,766 + MPMX19_00666 0.81 -0.3
688,766 + MPMX19_00666 0.81 -0.3
688,766 + MPMX19_00666 0.81 +0.0
688,766 + MPMX19_00666 0.81 -0.7
688,817 + -1.1
688,817 + +0.4
688,818 - +1.0
688,818 - -0.2
688,819 + +0.4
688,819 + -1.7
688,819 + +0.4
688,819 + +1.0
688,819 + -0.6
688,819 + +0.4
688,819 + +0.4
688,820 - -2.0
688,820 - -1.3
688,820 - -1.0
688,820 - +0.0
688,838 + -0.6
688,838 + +0.6
688,839 - +0.0
688,839 - -1.1
688,848 + -0.8

Or see this region's nucleotide sequence