Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00577 and MPMX19_00578 are separated by 48 nucleotides MPMX19_00578 and MPMX19_00579 are separated by 44 nucleotides MPMX19_00579 and MPMX19_00580 are separated by 56 nucleotides MPMX19_00580 and MPMX19_00581 are separated by 33 nucleotides
MPMX19_00577: MPMX19_00577 - Ribosomal RNA small subunit methyltransferase E, at 591,388 to 592,167
_00577
MPMX19_00578: MPMX19_00578 - Glutamate--cysteine ligase EgtA, at 592,216 to 593,580
_00578
MPMX19_00579: MPMX19_00579 - Ferredoxin-3, at 593,625 to 593,918
_00579
MPMX19_00580: MPMX19_00580 - hypothetical protein, at 593,975 to 594,175
_00580
MPMX19_00581: MPMX19_00581 - hypothetical protein, at 594,209 to 594,664
_00581
Position (kb) 592
593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.270 kb on + strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.271 kb on - strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.300 kb on + strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.301 kb on - strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.355 kb on + strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.356 kb on - strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.357 kb on + strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.358 kb on - strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.415 kb on + strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.416 kb on - strand at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.883 kb on + strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 591.884 kb on - strand, within MPMX19_00577 at 593.569 kb on + strand at 593.570 kb on - strand at 593.570 kb on - strand at 593.570 kb on - strand at 593.575 kb on + strand at 593.575 kb on + strand at 593.575 kb on + strand at 593.575 kb on + strand at 593.576 kb on - strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.626 kb on + strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.627 kb on - strand at 593.950 kb on - strand at 593.964 kb on + strand at 593.964 kb on + strand at 593.964 kb on + strand at 593.965 kb on - strand at 593.965 kb on - strand at 593.965 kb on - strand at 593.965 kb on - strand at 593.976 kb on + strand at 593.977 kb on - strand at 593.977 kb on - strand at 593.977 kb on - strand at 593.977 kb on - strand at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.036 kb on + strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.037 kb on - strand, within MPMX19_00580 at 594.232 kb on - strand at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.456 kb on + strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581 at 594.457 kb on - strand, within MPMX19_00581
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 591,270 + -0.9 591,270 + +0.9 591,270 + -0.9 591,270 + -0.6 591,271 - +1.5 591,271 - -0.7 591,271 - +0.7 591,300 + +2.1 591,300 + +0.3 591,300 + -3.1 591,300 + +0.1 591,300 + -1.1 591,301 - -1.4 591,301 - +0.7 591,301 - -0.3 591,301 - -0.7 591,301 - -0.2 591,301 - -1.0 591,301 - -1.9 591,355 + +0.3 591,355 + -1.4 591,355 + -0.4 591,355 + -0.5 591,355 + +0.1 591,355 + +0.5 591,355 + -0.5 591,355 + -0.8 591,355 + -0.8 591,355 + -1.6 591,355 + -1.0 591,355 + -1.5 591,355 + -0.4 591,355 + -0.9 591,355 + -0.0 591,355 + -0.4 591,355 + +0.2 591,356 - -0.9 591,356 - -0.0 591,356 - -0.5 591,356 - +0.8 591,356 - -1.3 591,356 - -0.4 591,356 - +1.3 591,356 - -1.1 591,356 - -0.3 591,356 - +0.2 591,356 - +0.7 591,356 - -0.2 591,356 - -1.5 591,357 + -0.1 591,357 + +0.3 591,357 + +0.5 591,357 + -0.5 591,357 + +0.5 591,357 + +1.3 591,357 + -1.7 591,357 + -0.7 591,357 + -2.1 591,357 + +0.3 591,357 + -0.5 591,357 + -1.1 591,357 + -0.9 591,357 + -0.9 591,358 - +0.1 591,358 - +0.3 591,358 - -0.1 591,358 - -1.6 591,358 - +1.2 591,358 - +0.3 591,358 - -0.9 591,358 - -0.2 591,358 - -1.1 591,358 - -2.1 591,358 - +2.1 591,358 - -0.3 591,358 - -1.3 591,358 - -1.0 591,415 + -1.1 591,415 + -0.1 591,415 + -0.2 591,415 + -0.8 591,415 + +0.2 591,415 + -0.3 591,415 + +0.3 591,415 + +0.7 591,415 + -0.3 591,415 + -0.7 591,415 + -0.1 591,416 - -0.3 591,416 - -0.9 591,416 - -0.8 591,416 - +0.3 591,416 - -2.1 591,416 - -0.5 591,416 - +0.1 591,416 - -0.4 591,416 - +1.0 591,416 - +0.1 591,416 - +0.5 591,416 - -0.4 591,883 + MPMX19_00577 0.63 -0.5 591,883 + MPMX19_00577 0.63 +1.5 591,883 + MPMX19_00577 0.63 -0.1 591,883 + MPMX19_00577 0.63 -1.0 591,883 + MPMX19_00577 0.63 -0.3 591,883 + MPMX19_00577 0.63 -0.1 591,883 + MPMX19_00577 0.63 +1.5 591,883 + MPMX19_00577 0.63 +0.6 591,883 + MPMX19_00577 0.63 -0.0 591,883 + MPMX19_00577 0.63 +1.5 591,884 - MPMX19_00577 0.64 -0.0 591,884 - MPMX19_00577 0.64 -0.4 591,884 - MPMX19_00577 0.64 -0.5 591,884 - MPMX19_00577 0.64 +0.1 591,884 - MPMX19_00577 0.64 +0.1 591,884 - MPMX19_00577 0.64 +1.2 591,884 - MPMX19_00577 0.64 +0.5 591,884 - MPMX19_00577 0.64 -1.3 591,884 - MPMX19_00577 0.64 +0.9 591,884 - MPMX19_00577 0.64 -0.9 591,884 - MPMX19_00577 0.64 -0.3 591,884 - MPMX19_00577 0.64 -1.3 591,884 - MPMX19_00577 0.64 -0.3 591,884 - MPMX19_00577 0.64 +0.4 591,884 - MPMX19_00577 0.64 +0.2 593,569 + +0.8 593,570 - +0.1 593,570 - +1.5 593,570 - -1.1 593,575 + +1.1 593,575 + -0.2 593,575 + -0.6 593,575 + +0.1 593,576 - +1.1 593,626 + +0.1 593,626 + +0.1 593,626 + -0.0 593,626 + -0.5 593,626 + +1.3 593,626 + -0.5 593,626 + -0.2 593,626 + -2.3 593,627 - -0.0 593,627 - -1.1 593,627 - -1.2 593,627 - +0.3 593,627 - -0.5 593,950 - -1.0 593,964 + +0.3 593,964 + +2.1 593,964 + -0.7 593,965 - +0.2 593,965 - -0.2 593,965 - +0.3 593,965 - -1.1 593,976 + +0.7 593,977 - -2.1 593,977 - +0.9 593,977 - -0.9 593,977 - -0.5 594,036 + MPMX19_00580 0.30 -0.4 594,036 + MPMX19_00580 0.30 +0.1 594,036 + MPMX19_00580 0.30 -0.7 594,036 + MPMX19_00580 0.30 -0.9 594,036 + MPMX19_00580 0.30 -0.3 594,036 + MPMX19_00580 0.30 -2.1 594,037 - MPMX19_00580 0.31 +0.1 594,037 - MPMX19_00580 0.31 -0.1 594,037 - MPMX19_00580 0.31 -0.9 594,037 - MPMX19_00580 0.31 +1.1 594,037 - MPMX19_00580 0.31 -0.7 594,037 - MPMX19_00580 0.31 -0.0 594,037 - MPMX19_00580 0.31 -0.7 594,037 - MPMX19_00580 0.31 -1.3 594,037 - MPMX19_00580 0.31 -0.3 594,037 - MPMX19_00580 0.31 -1.3 594,037 - MPMX19_00580 0.31 -0.9 594,037 - MPMX19_00580 0.31 -1.1 594,037 - MPMX19_00580 0.31 -0.3 594,232 - -0.3 594,456 + MPMX19_00581 0.54 +1.6 594,456 + MPMX19_00581 0.54 -1.3 594,456 + MPMX19_00581 0.54 -3.1 594,456 + MPMX19_00581 0.54 -0.3 594,456 + MPMX19_00581 0.54 -0.8 594,456 + MPMX19_00581 0.54 -2.7 594,456 + MPMX19_00581 0.54 +0.1 594,456 + MPMX19_00581 0.54 -0.1 594,457 - MPMX19_00581 0.54 -0.8 594,457 - MPMX19_00581 0.54 -1.4 594,457 - MPMX19_00581 0.54 -0.1 594,457 - MPMX19_00581 0.54 -1.4 594,457 - MPMX19_00581 0.54 +0.7 594,457 - MPMX19_00581 0.54 -1.7 594,457 - MPMX19_00581 0.54 +1.0 594,457 - MPMX19_00581 0.54 -0.2 594,457 - MPMX19_00581 0.54 -0.3 594,457 - MPMX19_00581 0.54 +0.2 594,457 - MPMX19_00581 0.54 -0.3
Or see this region's nucleotide sequence