Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00566 and MPMX19_00567 are separated by 230 nucleotides MPMX19_00567 and MPMX19_00568 are separated by 76 nucleotides
MPMX19_00566: MPMX19_00566 - hypothetical protein, at 580,578 to 581,963
_00566
MPMX19_00567: MPMX19_00567 - hypothetical protein, at 582,194 to 582,718
_00567
MPMX19_00568: MPMX19_00568 - Methyl-accepting chemotaxis protein, at 582,795 to 584,063
_00568
Position (kb) 582
583 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 581.451 kb on + strand, within MPMX19_00566 at 581.451 kb on + strand, within MPMX19_00566 at 581.451 kb on + strand, within MPMX19_00566 at 581.451 kb on + strand, within MPMX19_00566 at 581.451 kb on + strand, within MPMX19_00566 at 581.452 kb on - strand, within MPMX19_00566 at 581.452 kb on - strand, within MPMX19_00566 at 581.452 kb on - strand, within MPMX19_00566 at 581.452 kb on - strand, within MPMX19_00566 at 581.452 kb on - strand, within MPMX19_00566 at 581.673 kb on + strand, within MPMX19_00566 at 581.674 kb on - strand, within MPMX19_00566 at 581.674 kb on - strand, within MPMX19_00566 at 581.811 kb on + strand, within MPMX19_00566 at 581.811 kb on + strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.949 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.076 kb on + strand at 582.087 kb on - strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.291 kb on - strand, within MPMX19_00567 at 582.291 kb on - strand, within MPMX19_00567 at 582.291 kb on - strand, within MPMX19_00567 at 582.323 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.473 kb on + strand, within MPMX19_00567 at 582.474 kb on - strand, within MPMX19_00567 at 582.531 kb on - strand, within MPMX19_00567 at 582.587 kb on + strand, within MPMX19_00567 at 582.587 kb on + strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.692 kb on + strand at 582.693 kb on - strand at 582.693 kb on - strand at 582.693 kb on - strand at 582.716 kb on + strand at 582.716 kb on + strand at 582.716 kb on + strand at 582.716 kb on + strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 581,451 + MPMX19_00566 0.63 -0.7 581,451 + MPMX19_00566 0.63 +0.6 581,451 + MPMX19_00566 0.63 +1.1 581,451 + MPMX19_00566 0.63 -1.3 581,451 + MPMX19_00566 0.63 -0.5 581,452 - MPMX19_00566 0.63 -0.3 581,452 - MPMX19_00566 0.63 -0.3 581,452 - MPMX19_00566 0.63 -0.6 581,452 - MPMX19_00566 0.63 -0.7 581,452 - MPMX19_00566 0.63 -2.3 581,673 + MPMX19_00566 0.79 -0.5 581,674 - MPMX19_00566 0.79 -0.7 581,674 - MPMX19_00566 0.79 +0.5 581,811 + MPMX19_00566 0.89 -0.1 581,811 + MPMX19_00566 0.89 +0.1 581,812 - MPMX19_00566 0.89 -1.1 581,812 - MPMX19_00566 0.89 -1.0 581,812 - MPMX19_00566 0.89 +0.3 581,812 - MPMX19_00566 0.89 +1.3 581,949 + -0.4 582,050 + -1.0 582,050 + -2.3 582,050 + -0.5 582,050 + +0.9 582,050 + +0.5 582,050 + -2.2 582,050 + -0.3 582,050 + -0.3 582,051 - -1.3 582,051 - -0.3 582,051 - +0.8 582,051 - -0.2 582,051 - -0.4 582,051 - -0.7 582,051 - -1.5 582,051 - -0.2 582,051 - +0.1 582,051 - -0.9 582,051 - -0.1 582,051 - +0.8 582,051 - +1.7 582,076 + -0.3 582,087 - +0.7 582,112 + -1.1 582,112 + -2.1 582,112 + -1.3 582,112 + -0.1 582,112 + -1.4 582,112 + -0.1 582,112 + -1.8 582,112 + -0.7 582,112 + -0.4 582,112 + -1.1 582,113 - -0.9 582,113 - -0.5 582,113 - -1.4 582,113 - +0.1 582,113 - -1.3 582,113 - -1.7 582,113 - -2.2 582,113 - +0.3 582,113 - -0.9 582,113 - -1.0 582,290 + MPMX19_00567 0.18 -1.6 582,290 + MPMX19_00567 0.18 -1.0 582,290 + MPMX19_00567 0.18 +0.7 582,290 + MPMX19_00567 0.18 +0.2 582,290 + MPMX19_00567 0.18 -0.5 582,291 - MPMX19_00567 0.18 -0.3 582,291 - MPMX19_00567 0.18 -0.1 582,291 - MPMX19_00567 0.18 +0.1 582,323 + MPMX19_00567 0.25 +1.7 582,440 + MPMX19_00567 0.47 -0.7 582,440 + MPMX19_00567 0.47 +0.3 582,440 + MPMX19_00567 0.47 -1.7 582,440 + MPMX19_00567 0.47 -0.4 582,440 + MPMX19_00567 0.47 +0.5 582,440 + MPMX19_00567 0.47 -1.8 582,440 + MPMX19_00567 0.47 -1.1 582,440 + MPMX19_00567 0.47 -2.3 582,440 + MPMX19_00567 0.47 -0.9 582,440 + MPMX19_00567 0.47 -0.7 582,440 + MPMX19_00567 0.47 -1.4 582,440 + MPMX19_00567 0.47 -0.5 582,440 + MPMX19_00567 0.47 -0.7 582,440 + MPMX19_00567 0.47 -1.5 582,440 + MPMX19_00567 0.47 +1.3 582,440 + MPMX19_00567 0.47 +0.1 582,440 + MPMX19_00567 0.47 -1.5 582,440 + MPMX19_00567 0.47 -1.4 582,440 + MPMX19_00567 0.47 -0.7 582,441 - MPMX19_00567 0.47 +1.3 582,441 - MPMX19_00567 0.47 -0.9 582,441 - MPMX19_00567 0.47 -0.7 582,441 - MPMX19_00567 0.47 -0.7 582,441 - MPMX19_00567 0.47 +1.1 582,441 - MPMX19_00567 0.47 +0.1 582,441 - MPMX19_00567 0.47 -0.7 582,441 - MPMX19_00567 0.47 -0.7 582,441 - MPMX19_00567 0.47 -2.3 582,441 - MPMX19_00567 0.47 +0.7 582,441 - MPMX19_00567 0.47 -0.7 582,441 - MPMX19_00567 0.47 -0.5 582,441 - MPMX19_00567 0.47 -0.6 582,441 - MPMX19_00567 0.47 +0.5 582,441 - MPMX19_00567 0.47 -0.7 582,441 - MPMX19_00567 0.47 -1.9 582,441 - MPMX19_00567 0.47 +0.3 582,473 + MPMX19_00567 0.53 -1.5 582,474 - MPMX19_00567 0.53 +1.8 582,531 - MPMX19_00567 0.64 -0.3 582,587 + MPMX19_00567 0.75 -0.7 582,587 + MPMX19_00567 0.75 -1.4 582,588 - MPMX19_00567 0.75 +0.1 582,588 - MPMX19_00567 0.75 -0.3 582,588 - MPMX19_00567 0.75 +1.3 582,588 - MPMX19_00567 0.75 -1.3 582,588 - MPMX19_00567 0.75 -0.7 582,588 - MPMX19_00567 0.75 +1.5 582,692 + +2.1 582,693 - +0.3 582,693 - -0.6 582,693 - -0.6 582,716 + -0.3 582,716 + +0.1 582,716 + -0.4 582,716 + -0.9 582,717 - -0.3 582,717 - -0.5 582,717 - +0.1 582,717 - +0.7 582,717 - -1.3 582,915 + +1.2 582,915 + -0.1 582,915 + -0.3 582,915 + +1.5 582,915 + +0.1 582,915 + -0.7 582,915 + +0.5 582,915 + -1.5 582,915 + -1.4 582,915 + -0.9 582,915 + -1.4 582,915 + -0.1 582,915 + -2.1 582,916 - +0.8 582,916 - -0.6 582,916 - -1.3 582,916 - -0.8 582,916 - -0.6 582,916 - +0.2 582,916 - +0.1 582,916 - -0.5 582,916 - -1.1 582,916 - -3.0 582,916 - +0.6 582,916 - -1.4 582,916 - -1.8 582,916 - +0.3 583,122 + MPMX19_00568 0.26 +0.1 583,122 + MPMX19_00568 0.26 -0.9 583,122 + MPMX19_00568 0.26 -0.1 583,122 + MPMX19_00568 0.26 -0.1 583,122 + MPMX19_00568 0.26 +1.2 583,122 + MPMX19_00568 0.26 +0.2 583,122 + MPMX19_00568 0.26 -0.5 583,122 + MPMX19_00568 0.26 +0.4 583,122 + MPMX19_00568 0.26 -2.5 583,122 + MPMX19_00568 0.26 -1.3 583,122 + MPMX19_00568 0.26 -0.3 583,123 - MPMX19_00568 0.26 +0.6 583,123 - MPMX19_00568 0.26 +0.0 583,123 - MPMX19_00568 0.26 -0.8 583,123 - MPMX19_00568 0.26 -0.9 583,123 - MPMX19_00568 0.26 -1.1 583,123 - MPMX19_00568 0.26 -0.4 583,123 - MPMX19_00568 0.26 -0.7 583,123 - MPMX19_00568 0.26 +0.3 583,123 - MPMX19_00568 0.26 +0.5 583,123 - MPMX19_00568 0.26 +1.5 583,123 - MPMX19_00568 0.26 +1.3 583,123 - MPMX19_00568 0.26 -0.4 583,123 - MPMX19_00568 0.26 -0.3
Or see this region's nucleotide sequence