Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00549

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00548 and MPMX19_00549 are separated by 18 nucleotidesMPMX19_00549 and MPMX19_00550 overlap by 4 nucleotidesMPMX19_00550 and MPMX19_00551 are separated by 10 nucleotides MPMX19_00548: MPMX19_00548 - Periplasmic nitrate reductase, at 561,791 to 564,691 _00548 MPMX19_00549: MPMX19_00549 - Formate dehydrogenase iron-sulfur subunit, at 564,710 to 565,387 _00549 MPMX19_00550: MPMX19_00550 - hypothetical protein, at 565,384 to 565,578 _00550 MPMX19_00551: MPMX19_00551 - hypothetical protein, at 565,589 to 566,647 _00551 Position (kb) 564 565 566Strain fitness (log2 ratio) -2 -1 0 1 2at 563.729 kb on + strand, within MPMX19_00548at 563.729 kb on + strand, within MPMX19_00548at 563.729 kb on + strand, within MPMX19_00548at 563.729 kb on + strand, within MPMX19_00548at 563.729 kb on + strand, within MPMX19_00548at 563.729 kb on + strand, within MPMX19_00548at 563.729 kb on + strand, within MPMX19_00548at 563.729 kb on + strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.730 kb on - strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.795 kb on + strand, within MPMX19_00548at 563.796 kb on - strand, within MPMX19_00548at 563.796 kb on - strand, within MPMX19_00548at 563.796 kb on - strand, within MPMX19_00548at 563.796 kb on - strand, within MPMX19_00548at 563.796 kb on - strand, within MPMX19_00548at 563.796 kb on - strand, within MPMX19_00548at 563.891 kb on + strand, within MPMX19_00548at 563.892 kb on - strand, within MPMX19_00548at 564.040 kb on + strand, within MPMX19_00548at 564.040 kb on + strand, within MPMX19_00548at 564.041 kb on - strand, within MPMX19_00548at 564.041 kb on - strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.167 kb on + strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.168 kb on - strand, within MPMX19_00548at 564.197 kb on + strand, within MPMX19_00548at 564.198 kb on - strand, within MPMX19_00548at 564.198 kb on - strand, within MPMX19_00548at 564.198 kb on - strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.206 kb on + strand, within MPMX19_00548at 564.207 kb on - strand, within MPMX19_00548at 564.207 kb on - strand, within MPMX19_00548at 564.207 kb on - strand, within MPMX19_00548at 564.207 kb on - strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.242 kb on + strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.243 kb on - strand, within MPMX19_00548at 564.278 kb on + strand, within MPMX19_00548at 564.278 kb on + strand, within MPMX19_00548at 564.279 kb on - strand, within MPMX19_00548at 564.279 kb on - strand, within MPMX19_00548at 564.314 kb on + strand, within MPMX19_00548at 564.315 kb on - strand, within MPMX19_00548at 564.315 kb on - strand, within MPMX19_00548at 564.315 kb on - strand, within MPMX19_00548at 564.539 kb on + strandat 564.539 kb on + strandat 564.540 kb on - strandat 564.540 kb on - strandat 564.540 kb on - strandat 564.540 kb on - strandat 564.566 kb on + strandat 564.566 kb on + strandat 564.567 kb on - strandat 564.567 kb on - strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.623 kb on + strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.624 kb on - strandat 564.926 kb on + strand, within MPMX19_00549at 564.926 kb on + strand, within MPMX19_00549at 564.926 kb on + strand, within MPMX19_00549at 564.926 kb on + strand, within MPMX19_00549at 564.926 kb on + strand, within MPMX19_00549at 564.926 kb on + strand, within MPMX19_00549at 564.926 kb on + strand, within MPMX19_00549at 564.926 kb on + strand, within MPMX19_00549at 564.927 kb on - strand, within MPMX19_00549at 564.927 kb on - strand, within MPMX19_00549at 564.927 kb on - strand, within MPMX19_00549at 564.927 kb on - strand, within MPMX19_00549at 564.984 kb on - strand, within MPMX19_00549at 564.984 kb on - strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.992 kb on + strand, within MPMX19_00549at 564.993 kb on - strand, within MPMX19_00549at 564.993 kb on - strand, within MPMX19_00549at 564.993 kb on - strand, within MPMX19_00549at 564.993 kb on - strand, within MPMX19_00549at 564.993 kb on - strand, within MPMX19_00549at 564.993 kb on - strand, within MPMX19_00549at 565.121 kb on + strand, within MPMX19_00549at 565.121 kb on + strand, within MPMX19_00549at 565.121 kb on + strand, within MPMX19_00549at 565.122 kb on - strand, within MPMX19_00549at 565.122 kb on - strand, within MPMX19_00549at 565.122 kb on - strand, within MPMX19_00549at 565.122 kb on - strand, within MPMX19_00549at 565.223 kb on + strand, within MPMX19_00549at 565.223 kb on + strand, within MPMX19_00549at 565.223 kb on + strand, within MPMX19_00549at 565.223 kb on + strand, within MPMX19_00549at 565.223 kb on + strand, within MPMX19_00549at 565.223 kb on + strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.224 kb on - strand, within MPMX19_00549at 565.284 kb on - strand, within MPMX19_00549at 565.284 kb on - strand, within MPMX19_00549at 565.284 kb on - strand, within MPMX19_00549at 565.561 kb on + strandat 565.561 kb on + strandat 565.562 kb on - strandat 565.576 kb on + strandat 565.577 kb on - strandat 565.898 kb on + strand, within MPMX19_00551at 565.899 kb on - strand, within MPMX19_00551at 565.899 kb on - strand, within MPMX19_00551at 566.087 kb on + strand, within MPMX19_00551at 566.087 kb on + strand, within MPMX19_00551at 566.087 kb on + strand, within MPMX19_00551at 566.088 kb on - strand, within MPMX19_00551at 566.088 kb on - strand, within MPMX19_00551at 566.088 kb on - strand, within MPMX19_00551at 566.147 kb on + strand, within MPMX19_00551at 566.148 kb on - strand, within MPMX19_00551at 566.172 kb on + strand, within MPMX19_00551at 566.172 kb on + strand, within MPMX19_00551at 566.173 kb on - strand, within MPMX19_00551at 566.173 kb on - strand, within MPMX19_00551

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
563,729 + MPMX19_00548 0.67 +0.1
563,729 + MPMX19_00548 0.67 -0.5
563,729 + MPMX19_00548 0.67 -0.4
563,729 + MPMX19_00548 0.67 +0.2
563,729 + MPMX19_00548 0.67 +0.5
563,729 + MPMX19_00548 0.67 -0.1
563,729 + MPMX19_00548 0.67 -0.0
563,729 + MPMX19_00548 0.67 +1.0
563,730 - MPMX19_00548 0.67 +0.6
563,730 - MPMX19_00548 0.67 -1.0
563,730 - MPMX19_00548 0.67 -0.6
563,730 - MPMX19_00548 0.67 -1.5
563,730 - MPMX19_00548 0.67 -0.7
563,730 - MPMX19_00548 0.67 +1.7
563,730 - MPMX19_00548 0.67 -0.9
563,730 - MPMX19_00548 0.67 +0.7
563,730 - MPMX19_00548 0.67 -2.0
563,795 + MPMX19_00548 0.69 -1.5
563,795 + MPMX19_00548 0.69 +0.7
563,795 + MPMX19_00548 0.69 -0.0
563,795 + MPMX19_00548 0.69 -0.3
563,795 + MPMX19_00548 0.69 -2.5
563,795 + MPMX19_00548 0.69 -0.3
563,795 + MPMX19_00548 0.69 -1.9
563,795 + MPMX19_00548 0.69 -1.6
563,796 - MPMX19_00548 0.69 -1.0
563,796 - MPMX19_00548 0.69 +0.3
563,796 - MPMX19_00548 0.69 -0.3
563,796 - MPMX19_00548 0.69 +0.2
563,796 - MPMX19_00548 0.69 +0.7
563,796 - MPMX19_00548 0.69 -0.4
563,891 + MPMX19_00548 0.72 +0.1
563,892 - MPMX19_00548 0.72 -0.1
564,040 + MPMX19_00548 0.78 +0.3
564,040 + MPMX19_00548 0.78 -1.4
564,041 - MPMX19_00548 0.78 -0.3
564,041 - MPMX19_00548 0.78 -0.7
564,167 + MPMX19_00548 0.82 -0.7
564,167 + MPMX19_00548 0.82 -1.1
564,167 + MPMX19_00548 0.82 -0.3
564,167 + MPMX19_00548 0.82 +0.2
564,167 + MPMX19_00548 0.82 -1.7
564,167 + MPMX19_00548 0.82 -0.7
564,167 + MPMX19_00548 0.82 -0.9
564,167 + MPMX19_00548 0.82 -1.0
564,167 + MPMX19_00548 0.82 -2.6
564,167 + MPMX19_00548 0.82 -0.4
564,167 + MPMX19_00548 0.82 -2.6
564,168 - MPMX19_00548 0.82 -0.3
564,168 - MPMX19_00548 0.82 -1.4
564,168 - MPMX19_00548 0.82 +0.3
564,168 - MPMX19_00548 0.82 -1.5
564,168 - MPMX19_00548 0.82 -0.9
564,168 - MPMX19_00548 0.82 +0.2
564,168 - MPMX19_00548 0.82 +0.7
564,168 - MPMX19_00548 0.82 -2.4
564,168 - MPMX19_00548 0.82 +0.1
564,168 - MPMX19_00548 0.82 -1.6
564,168 - MPMX19_00548 0.82 -0.6
564,197 + MPMX19_00548 0.83 -0.4
564,198 - MPMX19_00548 0.83 +1.5
564,198 - MPMX19_00548 0.83 -1.3
564,198 - MPMX19_00548 0.83 -0.1
564,206 + MPMX19_00548 0.83 +0.1
564,206 + MPMX19_00548 0.83 -1.5
564,206 + MPMX19_00548 0.83 +0.1
564,206 + MPMX19_00548 0.83 -0.1
564,206 + MPMX19_00548 0.83 -1.2
564,206 + MPMX19_00548 0.83 +0.3
564,206 + MPMX19_00548 0.83 -0.3
564,206 + MPMX19_00548 0.83 -0.7
564,207 - MPMX19_00548 0.83 -0.7
564,207 - MPMX19_00548 0.83 -1.9
564,207 - MPMX19_00548 0.83 +0.8
564,207 - MPMX19_00548 0.83 -0.0
564,242 + MPMX19_00548 0.84 -1.4
564,242 + MPMX19_00548 0.84 -0.1
564,242 + MPMX19_00548 0.84 -1.5
564,242 + MPMX19_00548 0.84 +0.3
564,242 + MPMX19_00548 0.84 -0.2
564,242 + MPMX19_00548 0.84 +0.4
564,242 + MPMX19_00548 0.84 -0.1
564,242 + MPMX19_00548 0.84 -0.7
564,242 + MPMX19_00548 0.84 -0.7
564,242 + MPMX19_00548 0.84 +0.1
564,242 + MPMX19_00548 0.84 +0.7
564,242 + MPMX19_00548 0.84 +2.1
564,242 + MPMX19_00548 0.84 -0.8
564,242 + MPMX19_00548 0.84 -0.8
564,243 - MPMX19_00548 0.85 +1.1
564,243 - MPMX19_00548 0.85 -0.5
564,243 - MPMX19_00548 0.85 -0.3
564,243 - MPMX19_00548 0.85 -0.5
564,243 - MPMX19_00548 0.85 +0.7
564,243 - MPMX19_00548 0.85 -0.1
564,243 - MPMX19_00548 0.85 -1.4
564,243 - MPMX19_00548 0.85 -0.5
564,243 - MPMX19_00548 0.85 -1.5
564,243 - MPMX19_00548 0.85 +0.0
564,243 - MPMX19_00548 0.85 +0.2
564,243 - MPMX19_00548 0.85 -1.9
564,243 - MPMX19_00548 0.85 -1.2
564,278 + MPMX19_00548 0.86 +1.4
564,278 + MPMX19_00548 0.86 -0.4
564,279 - MPMX19_00548 0.86 -1.6
564,279 - MPMX19_00548 0.86 +0.3
564,314 + MPMX19_00548 0.87 +0.6
564,315 - MPMX19_00548 0.87 -0.8
564,315 - MPMX19_00548 0.87 +0.8
564,315 - MPMX19_00548 0.87 +0.5
564,539 + -1.1
564,539 + -0.9
564,540 - -1.5
564,540 - +0.2
564,540 - +0.1
564,540 - -0.6
564,566 + -1.6
564,566 + +0.3
564,567 - -0.9
564,567 - +0.9
564,623 + -1.8
564,623 + -0.0
564,623 + -0.8
564,623 + +1.4
564,623 + -1.2
564,623 + -1.0
564,623 + -0.7
564,623 + +0.3
564,623 + -0.9
564,623 + -1.2
564,623 + -0.3
564,624 - +0.1
564,624 - -0.3
564,624 - -0.5
564,624 - -0.3
564,624 - -0.7
564,624 - -1.1
564,624 - -1.3
564,624 - +0.1
564,624 - +1.1
564,926 + MPMX19_00549 0.32 -1.7
564,926 + MPMX19_00549 0.32 -1.0
564,926 + MPMX19_00549 0.32 -0.6
564,926 + MPMX19_00549 0.32 -1.9
564,926 + MPMX19_00549 0.32 +0.1
564,926 + MPMX19_00549 0.32 +0.6
564,926 + MPMX19_00549 0.32 -1.3
564,926 + MPMX19_00549 0.32 -0.7
564,927 - MPMX19_00549 0.32 +0.7
564,927 - MPMX19_00549 0.32 -1.5
564,927 - MPMX19_00549 0.32 +0.3
564,927 - MPMX19_00549 0.32 +0.8
564,984 - MPMX19_00549 0.40 +0.2
564,984 - MPMX19_00549 0.40 +1.5
564,992 + MPMX19_00549 0.42 -0.6
564,992 + MPMX19_00549 0.42 +1.1
564,992 + MPMX19_00549 0.42 +0.9
564,992 + MPMX19_00549 0.42 -1.5
564,992 + MPMX19_00549 0.42 -0.8
564,992 + MPMX19_00549 0.42 +0.2
564,992 + MPMX19_00549 0.42 -0.4
564,992 + MPMX19_00549 0.42 -0.2
564,992 + MPMX19_00549 0.42 -0.4
564,992 + MPMX19_00549 0.42 -0.3
564,992 + MPMX19_00549 0.42 +0.5
564,992 + MPMX19_00549 0.42 -1.0
564,993 - MPMX19_00549 0.42 +0.5
564,993 - MPMX19_00549 0.42 -2.0
564,993 - MPMX19_00549 0.42 -1.2
564,993 - MPMX19_00549 0.42 -0.7
564,993 - MPMX19_00549 0.42 +0.7
564,993 - MPMX19_00549 0.42 +0.1
565,121 + MPMX19_00549 0.61 -1.5
565,121 + MPMX19_00549 0.61 +0.7
565,121 + MPMX19_00549 0.61 +0.5
565,122 - MPMX19_00549 0.61 -0.5
565,122 - MPMX19_00549 0.61 -0.8
565,122 - MPMX19_00549 0.61 +0.0
565,122 - MPMX19_00549 0.61 -1.5
565,223 + MPMX19_00549 0.76 -0.4
565,223 + MPMX19_00549 0.76 +0.3
565,223 + MPMX19_00549 0.76 -1.0
565,223 + MPMX19_00549 0.76 -1.0
565,223 + MPMX19_00549 0.76 +2.1
565,223 + MPMX19_00549 0.76 -0.5
565,224 - MPMX19_00549 0.76 +0.2
565,224 - MPMX19_00549 0.76 -1.7
565,224 - MPMX19_00549 0.76 +1.4
565,224 - MPMX19_00549 0.76 -1.1
565,224 - MPMX19_00549 0.76 +0.2
565,224 - MPMX19_00549 0.76 -1.3
565,224 - MPMX19_00549 0.76 -1.5
565,224 - MPMX19_00549 0.76 -1.2
565,284 - MPMX19_00549 0.85 +1.2
565,284 - MPMX19_00549 0.85 +0.7
565,284 - MPMX19_00549 0.85 -0.5
565,561 + -1.1
565,561 + +0.9
565,562 - +0.5
565,576 + -0.9
565,577 - -1.3
565,898 + MPMX19_00551 0.29 -0.7
565,899 - MPMX19_00551 0.29 -0.9
565,899 - MPMX19_00551 0.29 +0.3
566,087 + MPMX19_00551 0.47 +0.5
566,087 + MPMX19_00551 0.47 -0.8
566,087 + MPMX19_00551 0.47 -1.2
566,088 - MPMX19_00551 0.47 +0.5
566,088 - MPMX19_00551 0.47 -2.1
566,088 - MPMX19_00551 0.47 -0.1
566,147 + MPMX19_00551 0.53 -0.1
566,148 - MPMX19_00551 0.53 -0.2
566,172 + MPMX19_00551 0.55 +0.8
566,172 + MPMX19_00551 0.55 +0.1
566,173 - MPMX19_00551 0.55 +0.1
566,173 - MPMX19_00551 0.55 -1.1

Or see this region's nucleotide sequence