Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00544 and MPMX19_00545 overlap by 4 nucleotides MPMX19_00545 and MPMX19_00546 are separated by 452 nucleotides MPMX19_00546 and MPMX19_00547 are separated by 16 nucleotides MPMX19_00547 and MPMX19_00548 are separated by 13 nucleotides
MPMX19_00544: MPMX19_00544 - hypothetical protein, at 559,394 to 559,903
_00544
MPMX19_00545: MPMX19_00545 - hypothetical protein, at 559,900 to 560,430
_00545
MPMX19_00546: MPMX19_00546 - Chaperone protein TorD, at 560,883 to 561,509
_00546
MPMX19_00547: MPMX19_00547 - hypothetical protein, at 561,526 to 561,777
_00547
MPMX19_00548: MPMX19_00548 - Periplasmic nitrate reductase, at 561,791 to 564,691
_00548
Position (kb) 560
561
562 Strain fitness (log2 ratio) -2
-1
0
1
2 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.215 kb on + strand, within MPMX19_00545 at 560.216 kb on - strand, within MPMX19_00545 at 560.216 kb on - strand, within MPMX19_00545 at 560.216 kb on - strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.242 kb on + strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.243 kb on - strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.254 kb on + strand, within MPMX19_00545 at 560.255 kb on - strand, within MPMX19_00545 at 560.255 kb on - strand, within MPMX19_00545 at 560.255 kb on - strand, within MPMX19_00545 at 560.296 kb on + strand, within MPMX19_00545 at 560.297 kb on - strand, within MPMX19_00545 at 560.297 kb on - strand, within MPMX19_00545 at 560.428 kb on + strand at 560.429 kb on - strand at 560.429 kb on - strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.455 kb on + strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.456 kb on - strand at 560.653 kb on + strand at 560.653 kb on + strand at 560.653 kb on + strand at 560.653 kb on + strand at 560.654 kb on - strand at 560.654 kb on - strand at 560.716 kb on - strand at 560.716 kb on - strand at 560.716 kb on - strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.730 kb on + strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.731 kb on - strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.903 kb on + strand at 560.904 kb on - strand at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.952 kb on + strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 560.953 kb on - strand, within MPMX19_00546 at 561.041 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.165 kb on + strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.166 kb on - strand, within MPMX19_00546 at 561.439 kb on - strand, within MPMX19_00546 at 561.579 kb on + strand, within MPMX19_00547 at 561.580 kb on - strand, within MPMX19_00547 at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.757 kb on + strand at 561.758 kb on - strand at 561.758 kb on - strand at 561.758 kb on - strand at 561.775 kb on + strand at 561.775 kb on + strand at 561.775 kb on + strand at 561.775 kb on + strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.776 kb on - strand at 561.841 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.054 kb on + strand at 562.055 kb on - strand at 562.055 kb on - strand at 562.055 kb on - strand at 562.055 kb on - strand at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.343 kb on + strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.344 kb on - strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.469 kb on + strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548 at 562.470 kb on - strand, within MPMX19_00548
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 560,215 + MPMX19_00545 0.59 -1.6 560,215 + MPMX19_00545 0.59 -0.3 560,215 + MPMX19_00545 0.59 -0.4 560,215 + MPMX19_00545 0.59 -0.4 560,215 + MPMX19_00545 0.59 -1.6 560,215 + MPMX19_00545 0.59 -2.2 560,216 - MPMX19_00545 0.60 -1.1 560,216 - MPMX19_00545 0.60 -1.3 560,216 - MPMX19_00545 0.60 +0.8 560,242 + MPMX19_00545 0.64 -1.1 560,242 + MPMX19_00545 0.64 -1.2 560,242 + MPMX19_00545 0.64 -0.5 560,242 + MPMX19_00545 0.64 +0.3 560,242 + MPMX19_00545 0.64 -0.6 560,242 + MPMX19_00545 0.64 -1.3 560,242 + MPMX19_00545 0.64 +0.3 560,243 - MPMX19_00545 0.65 -0.6 560,243 - MPMX19_00545 0.65 -0.3 560,243 - MPMX19_00545 0.65 -0.9 560,243 - MPMX19_00545 0.65 -1.7 560,243 - MPMX19_00545 0.65 -2.0 560,254 + MPMX19_00545 0.67 -0.7 560,254 + MPMX19_00545 0.67 +0.5 560,254 + MPMX19_00545 0.67 +2.1 560,254 + MPMX19_00545 0.67 -0.3 560,254 + MPMX19_00545 0.67 -1.6 560,255 - MPMX19_00545 0.67 -0.9 560,255 - MPMX19_00545 0.67 -1.4 560,255 - MPMX19_00545 0.67 +0.5 560,296 + MPMX19_00545 0.75 -1.3 560,297 - MPMX19_00545 0.75 -0.4 560,297 - MPMX19_00545 0.75 +1.1 560,428 + -1.1 560,429 - -1.1 560,429 - -0.7 560,455 + -1.1 560,455 + -0.0 560,455 + -0.4 560,455 + -0.1 560,455 + -1.5 560,455 + -0.5 560,455 + -1.6 560,455 + -0.3 560,455 + -1.5 560,455 + +0.3 560,455 + -1.1 560,455 + -1.0 560,455 + -0.5 560,455 + +0.6 560,455 + +0.1 560,455 + +0.3 560,456 - -0.7 560,456 - -0.4 560,456 - -0.4 560,456 - -0.5 560,456 - +0.7 560,456 - +0.5 560,456 - -0.8 560,456 - +0.0 560,456 - +0.1 560,456 - -1.3 560,456 - -0.6 560,456 - -0.5 560,653 + -1.4 560,653 + -0.6 560,653 + -0.5 560,653 + -1.3 560,654 - +1.0 560,654 - -0.1 560,716 - -0.5 560,716 - -1.4 560,716 - -0.6 560,730 + -0.4 560,730 + -1.6 560,730 + -0.6 560,730 + +0.3 560,730 + -1.3 560,730 + +1.5 560,730 + -1.7 560,730 + +1.7 560,730 + -0.3 560,730 + -1.4 560,731 - +0.1 560,731 - -0.1 560,731 - +1.0 560,731 - -1.1 560,731 - -1.3 560,731 - -0.5 560,731 - -0.3 560,731 - -0.1 560,903 + +1.2 560,903 + -0.6 560,903 + -0.3 560,903 + -1.7 560,903 + -1.6 560,903 + +1.6 560,903 + -0.5 560,903 + -2.6 560,904 - -1.1 560,952 + MPMX19_00546 0.11 -0.4 560,952 + MPMX19_00546 0.11 -1.7 560,952 + MPMX19_00546 0.11 -0.6 560,952 + MPMX19_00546 0.11 -1.6 560,952 + MPMX19_00546 0.11 -0.4 560,952 + MPMX19_00546 0.11 -0.9 560,952 + MPMX19_00546 0.11 -1.7 560,952 + MPMX19_00546 0.11 -1.8 560,952 + MPMX19_00546 0.11 +1.7 560,952 + MPMX19_00546 0.11 -0.8 560,952 + MPMX19_00546 0.11 -0.3 560,952 + MPMX19_00546 0.11 -1.8 560,952 + MPMX19_00546 0.11 +0.5 560,952 + MPMX19_00546 0.11 -0.9 560,952 + MPMX19_00546 0.11 +0.2 560,952 + MPMX19_00546 0.11 -1.1 560,952 + MPMX19_00546 0.11 +0.3 560,952 + MPMX19_00546 0.11 -1.6 560,952 + MPMX19_00546 0.11 -1.3 560,952 + MPMX19_00546 0.11 -0.3 560,953 - MPMX19_00546 0.11 +0.2 560,953 - MPMX19_00546 0.11 -0.4 560,953 - MPMX19_00546 0.11 -0.5 560,953 - MPMX19_00546 0.11 -0.6 560,953 - MPMX19_00546 0.11 -0.4 560,953 - MPMX19_00546 0.11 +1.1 560,953 - MPMX19_00546 0.11 -0.0 560,953 - MPMX19_00546 0.11 +0.2 560,953 - MPMX19_00546 0.11 +0.5 560,953 - MPMX19_00546 0.11 -1.3 560,953 - MPMX19_00546 0.11 -0.5 560,953 - MPMX19_00546 0.11 -0.5 560,953 - MPMX19_00546 0.11 -0.9 560,953 - MPMX19_00546 0.11 -1.9 560,953 - MPMX19_00546 0.11 -2.0 560,953 - MPMX19_00546 0.11 -1.8 560,953 - MPMX19_00546 0.11 -0.6 560,953 - MPMX19_00546 0.11 -0.1 561,041 + MPMX19_00546 0.25 +2.1 561,165 + MPMX19_00546 0.45 -0.3 561,165 + MPMX19_00546 0.45 +0.6 561,165 + MPMX19_00546 0.45 -0.6 561,165 + MPMX19_00546 0.45 +1.4 561,165 + MPMX19_00546 0.45 -0.5 561,165 + MPMX19_00546 0.45 -0.7 561,165 + MPMX19_00546 0.45 -0.9 561,165 + MPMX19_00546 0.45 -2.3 561,165 + MPMX19_00546 0.45 -0.3 561,165 + MPMX19_00546 0.45 -0.5 561,165 + MPMX19_00546 0.45 +0.2 561,165 + MPMX19_00546 0.45 -1.3 561,165 + MPMX19_00546 0.45 -1.1 561,165 + MPMX19_00546 0.45 -1.1 561,166 - MPMX19_00546 0.45 -0.6 561,166 - MPMX19_00546 0.45 -1.4 561,166 - MPMX19_00546 0.45 -0.3 561,166 - MPMX19_00546 0.45 -2.0 561,166 - MPMX19_00546 0.45 +0.5 561,166 - MPMX19_00546 0.45 -0.7 561,166 - MPMX19_00546 0.45 -0.7 561,166 - MPMX19_00546 0.45 -0.1 561,166 - MPMX19_00546 0.45 -0.7 561,166 - MPMX19_00546 0.45 -0.9 561,166 - MPMX19_00546 0.45 -0.1 561,166 - MPMX19_00546 0.45 -0.9 561,166 - MPMX19_00546 0.45 -2.3 561,166 - MPMX19_00546 0.45 +0.6 561,166 - MPMX19_00546 0.45 +0.2 561,439 - MPMX19_00546 0.89 +0.2 561,579 + MPMX19_00547 0.21 +0.5 561,580 - MPMX19_00547 0.21 -1.3 561,757 + -0.5 561,757 + -0.3 561,757 + -1.1 561,757 + -1.4 561,757 + +1.0 561,757 + +0.7 561,758 - -2.3 561,758 - +0.7 561,758 - -1.3 561,775 + -1.7 561,775 + -0.2 561,775 + +0.7 561,775 + -0.8 561,776 - -0.1 561,776 - -1.3 561,776 - -0.3 561,776 - +0.1 561,776 - -0.1 561,776 - -0.8 561,776 - -0.9 561,776 - -1.0 561,776 - -0.5 561,776 - -0.4 561,841 + -1.7 562,054 + -0.4 562,054 + -0.8 562,054 + -0.0 562,054 + -1.2 562,054 + +0.0 562,054 + +1.1 562,054 + -0.0 562,055 - -0.8 562,055 - -0.1 562,055 - -0.9 562,055 - -0.3 562,343 + MPMX19_00548 0.19 -0.9 562,343 + MPMX19_00548 0.19 -1.5 562,343 + MPMX19_00548 0.19 -1.5 562,343 + MPMX19_00548 0.19 -0.3 562,343 + MPMX19_00548 0.19 +0.2 562,343 + MPMX19_00548 0.19 +0.3 562,343 + MPMX19_00548 0.19 +0.3 562,343 + MPMX19_00548 0.19 -2.2 562,344 - MPMX19_00548 0.19 -2.5 562,344 - MPMX19_00548 0.19 -0.3 562,344 - MPMX19_00548 0.19 +0.2 562,344 - MPMX19_00548 0.19 -0.8 562,344 - MPMX19_00548 0.19 -1.2 562,344 - MPMX19_00548 0.19 +1.8 562,344 - MPMX19_00548 0.19 -1.8 562,344 - MPMX19_00548 0.19 -0.1 562,469 + MPMX19_00548 0.23 +0.1 562,469 + MPMX19_00548 0.23 -1.5 562,469 + MPMX19_00548 0.23 -0.8 562,469 + MPMX19_00548 0.23 -1.4 562,469 + MPMX19_00548 0.23 -1.4 562,469 + MPMX19_00548 0.23 -0.3 562,469 + MPMX19_00548 0.23 -0.1 562,469 + MPMX19_00548 0.23 -0.8 562,469 + MPMX19_00548 0.23 -0.3 562,469 + MPMX19_00548 0.23 +0.6 562,469 + MPMX19_00548 0.23 -0.5 562,469 + MPMX19_00548 0.23 -1.1 562,469 + MPMX19_00548 0.23 -0.5 562,469 + MPMX19_00548 0.23 -0.7 562,469 + MPMX19_00548 0.23 -1.3 562,469 + MPMX19_00548 0.23 +0.4 562,469 + MPMX19_00548 0.23 -1.0 562,469 + MPMX19_00548 0.23 -0.6 562,469 + MPMX19_00548 0.23 -1.4 562,470 - MPMX19_00548 0.23 -0.3 562,470 - MPMX19_00548 0.23 -0.4 562,470 - MPMX19_00548 0.23 -0.5 562,470 - MPMX19_00548 0.23 -0.6 562,470 - MPMX19_00548 0.23 +0.7 562,470 - MPMX19_00548 0.23 -1.7 562,470 - MPMX19_00548 0.23 +0.5 562,470 - MPMX19_00548 0.23 -1.0 562,470 - MPMX19_00548 0.23 +0.2 562,470 - MPMX19_00548 0.23 +1.7
Or see this region's nucleotide sequence