Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00545

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00543 and MPMX19_00544 overlap by 4 nucleotidesMPMX19_00544 and MPMX19_00545 overlap by 4 nucleotidesMPMX19_00545 and MPMX19_00546 are separated by 452 nucleotides MPMX19_00543: MPMX19_00543 - Molybdenum cofactor guanylyltransferase, at 558,759 to 559,397 _00543 MPMX19_00544: MPMX19_00544 - hypothetical protein, at 559,394 to 559,903 _00544 MPMX19_00545: MPMX19_00545 - hypothetical protein, at 559,900 to 560,430 _00545 MPMX19_00546: MPMX19_00546 - Chaperone protein TorD, at 560,883 to 561,509 _00546 Position (kb) 559 560 561Strain fitness (log2 ratio) -2 -1 0 1 2at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 559.205 kb on + strand, within MPMX19_00543at 559.635 kb on - strand, within MPMX19_00544at 559.635 kb on - strand, within MPMX19_00544at 559.751 kb on + strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.296 kb on + strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545at 560.428 kb on + strandat 560.429 kb on - strandat 560.429 kb on - strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.455 kb on + strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.456 kb on - strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.653 kb on + strandat 560.654 kb on - strandat 560.654 kb on - strandat 560.716 kb on - strandat 560.716 kb on - strandat 560.716 kb on - strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.730 kb on + strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.731 kb on - strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.903 kb on + strandat 560.904 kb on - strandat 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.952 kb on + strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 560.953 kb on - strand, within MPMX19_00546at 561.041 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.165 kb on + strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546at 561.166 kb on - strand, within MPMX19_00546

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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558,993 + MPMX19_00543 0.37 -0.9
558,993 + MPMX19_00543 0.37 +0.0
558,993 + MPMX19_00543 0.37 +0.5
558,993 + MPMX19_00543 0.37 -0.3
558,994 - MPMX19_00543 0.37 +0.3
558,994 - MPMX19_00543 0.37 -2.5
558,994 - MPMX19_00543 0.37 +0.3
559,205 + MPMX19_00543 0.70 +0.5
559,635 - MPMX19_00544 0.47 +0.5
559,635 - MPMX19_00544 0.47 +0.3
559,751 + MPMX19_00544 0.70 -0.3
559,752 - MPMX19_00544 0.70 -1.5
559,752 - MPMX19_00544 0.70 -1.4
560,215 + MPMX19_00545 0.59 -1.6
560,215 + MPMX19_00545 0.59 -0.3
560,215 + MPMX19_00545 0.59 -0.4
560,215 + MPMX19_00545 0.59 -0.4
560,215 + MPMX19_00545 0.59 -1.6
560,215 + MPMX19_00545 0.59 -2.2
560,216 - MPMX19_00545 0.60 -1.1
560,216 - MPMX19_00545 0.60 -1.3
560,216 - MPMX19_00545 0.60 +0.8
560,242 + MPMX19_00545 0.64 -1.1
560,242 + MPMX19_00545 0.64 -1.2
560,242 + MPMX19_00545 0.64 -0.5
560,242 + MPMX19_00545 0.64 +0.3
560,242 + MPMX19_00545 0.64 -0.6
560,242 + MPMX19_00545 0.64 -1.3
560,242 + MPMX19_00545 0.64 +0.3
560,243 - MPMX19_00545 0.65 -0.6
560,243 - MPMX19_00545 0.65 -0.3
560,243 - MPMX19_00545 0.65 -0.9
560,243 - MPMX19_00545 0.65 -1.7
560,243 - MPMX19_00545 0.65 -2.0
560,254 + MPMX19_00545 0.67 -0.7
560,254 + MPMX19_00545 0.67 +0.5
560,254 + MPMX19_00545 0.67 +2.1
560,254 + MPMX19_00545 0.67 -0.3
560,254 + MPMX19_00545 0.67 -1.6
560,255 - MPMX19_00545 0.67 -0.9
560,255 - MPMX19_00545 0.67 -1.4
560,255 - MPMX19_00545 0.67 +0.5
560,296 + MPMX19_00545 0.75 -1.3
560,297 - MPMX19_00545 0.75 -0.4
560,297 - MPMX19_00545 0.75 +1.1
560,428 + -1.1
560,429 - -1.1
560,429 - -0.7
560,455 + -1.1
560,455 + -0.0
560,455 + -0.4
560,455 + -0.1
560,455 + -1.5
560,455 + -0.5
560,455 + -1.6
560,455 + -0.3
560,455 + -1.5
560,455 + +0.3
560,455 + -1.1
560,455 + -1.0
560,455 + -0.5
560,455 + +0.6
560,455 + +0.1
560,455 + +0.3
560,456 - -0.7
560,456 - -0.4
560,456 - -0.4
560,456 - -0.5
560,456 - +0.7
560,456 - +0.5
560,456 - -0.8
560,456 - +0.0
560,456 - +0.1
560,456 - -1.3
560,456 - -0.6
560,456 - -0.5
560,653 + -1.4
560,653 + -0.6
560,653 + -0.5
560,653 + -1.3
560,654 - +1.0
560,654 - -0.1
560,716 - -0.5
560,716 - -1.4
560,716 - -0.6
560,730 + -0.4
560,730 + -1.6
560,730 + -0.6
560,730 + +0.3
560,730 + -1.3
560,730 + +1.5
560,730 + -1.7
560,730 + +1.7
560,730 + -0.3
560,730 + -1.4
560,731 - +0.1
560,731 - -0.1
560,731 - +1.0
560,731 - -1.1
560,731 - -1.3
560,731 - -0.5
560,731 - -0.3
560,731 - -0.1
560,903 + +1.2
560,903 + -0.6
560,903 + -0.3
560,903 + -1.7
560,903 + -1.6
560,903 + +1.6
560,903 + -0.5
560,903 + -2.6
560,904 - -1.1
560,952 + MPMX19_00546 0.11 -0.4
560,952 + MPMX19_00546 0.11 -1.7
560,952 + MPMX19_00546 0.11 -0.6
560,952 + MPMX19_00546 0.11 -1.6
560,952 + MPMX19_00546 0.11 -0.4
560,952 + MPMX19_00546 0.11 -0.9
560,952 + MPMX19_00546 0.11 -1.7
560,952 + MPMX19_00546 0.11 -1.8
560,952 + MPMX19_00546 0.11 +1.7
560,952 + MPMX19_00546 0.11 -0.8
560,952 + MPMX19_00546 0.11 -0.3
560,952 + MPMX19_00546 0.11 -1.8
560,952 + MPMX19_00546 0.11 +0.5
560,952 + MPMX19_00546 0.11 -0.9
560,952 + MPMX19_00546 0.11 +0.2
560,952 + MPMX19_00546 0.11 -1.1
560,952 + MPMX19_00546 0.11 +0.3
560,952 + MPMX19_00546 0.11 -1.6
560,952 + MPMX19_00546 0.11 -1.3
560,952 + MPMX19_00546 0.11 -0.3
560,953 - MPMX19_00546 0.11 +0.2
560,953 - MPMX19_00546 0.11 -0.4
560,953 - MPMX19_00546 0.11 -0.5
560,953 - MPMX19_00546 0.11 -0.6
560,953 - MPMX19_00546 0.11 -0.4
560,953 - MPMX19_00546 0.11 +1.1
560,953 - MPMX19_00546 0.11 -0.0
560,953 - MPMX19_00546 0.11 +0.2
560,953 - MPMX19_00546 0.11 +0.5
560,953 - MPMX19_00546 0.11 -1.3
560,953 - MPMX19_00546 0.11 -0.5
560,953 - MPMX19_00546 0.11 -0.5
560,953 - MPMX19_00546 0.11 -0.9
560,953 - MPMX19_00546 0.11 -1.9
560,953 - MPMX19_00546 0.11 -2.0
560,953 - MPMX19_00546 0.11 -1.8
560,953 - MPMX19_00546 0.11 -0.6
560,953 - MPMX19_00546 0.11 -0.1
561,041 + MPMX19_00546 0.25 +2.1
561,165 + MPMX19_00546 0.45 -0.3
561,165 + MPMX19_00546 0.45 +0.6
561,165 + MPMX19_00546 0.45 -0.6
561,165 + MPMX19_00546 0.45 +1.4
561,165 + MPMX19_00546 0.45 -0.5
561,165 + MPMX19_00546 0.45 -0.7
561,165 + MPMX19_00546 0.45 -0.9
561,165 + MPMX19_00546 0.45 -2.3
561,165 + MPMX19_00546 0.45 -0.3
561,165 + MPMX19_00546 0.45 -0.5
561,165 + MPMX19_00546 0.45 +0.2
561,165 + MPMX19_00546 0.45 -1.3
561,165 + MPMX19_00546 0.45 -1.1
561,165 + MPMX19_00546 0.45 -1.1
561,166 - MPMX19_00546 0.45 -0.6
561,166 - MPMX19_00546 0.45 -1.4
561,166 - MPMX19_00546 0.45 -0.3
561,166 - MPMX19_00546 0.45 -2.0
561,166 - MPMX19_00546 0.45 +0.5
561,166 - MPMX19_00546 0.45 -0.7
561,166 - MPMX19_00546 0.45 -0.7
561,166 - MPMX19_00546 0.45 -0.1
561,166 - MPMX19_00546 0.45 -0.7
561,166 - MPMX19_00546 0.45 -0.9
561,166 - MPMX19_00546 0.45 -0.1
561,166 - MPMX19_00546 0.45 -0.9
561,166 - MPMX19_00546 0.45 -2.3
561,166 - MPMX19_00546 0.45 +0.6
561,166 - MPMX19_00546 0.45 +0.2

Or see this region's nucleotide sequence