Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00510 and MPMX19_00511 are separated by 85 nucleotides MPMX19_00511 and MPMX19_00512 are separated by 143 nucleotides MPMX19_00512 and MPMX19_00513 are separated by 254 nucleotides
MPMX19_00510: MPMX19_00510 - Sensor histidine kinase RcsC, at 513,666 to 514,433
_00510
MPMX19_00511: MPMX19_00511 - hypothetical protein, at 514,519 to 515,010
_00511
MPMX19_00512: MPMX19_00512 - Sensor histidine kinase RcsC, at 515,154 to 516,764
_00512
MPMX19_00513: MPMX19_00513 - Phosphotransferase RcsD, at 517,019 to 518,488
_00513
Position (kb) 515
516
517 Strain fitness (log2 ratio) -2
-1
0
1
2 at 514.473 kb on + strand at 514.474 kb on - strand at 514.474 kb on - strand at 514.474 kb on - strand at 514.543 kb on - strand at 514.667 kb on + strand, within MPMX19_00511 at 514.668 kb on - strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.739 kb on + strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.740 kb on - strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.763 kb on + strand, within MPMX19_00511 at 514.764 kb on - strand, within MPMX19_00511 at 514.901 kb on + strand, within MPMX19_00511 at 514.901 kb on + strand, within MPMX19_00511 at 514.902 kb on - strand, within MPMX19_00511 at 515.042 kb on + strand at 515.042 kb on + strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.043 kb on - strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.127 kb on + strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.128 kb on - strand at 515.581 kb on - strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.773 kb on + strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.774 kb on - strand, within MPMX19_00512 at 515.974 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.998 kb on + strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 515.999 kb on - strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.009 kb on + strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.010 kb on - strand, within MPMX19_00512 at 516.375 kb on + strand, within MPMX19_00512 at 516.375 kb on + strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.376 kb on - strand, within MPMX19_00512 at 516.412 kb on - strand, within MPMX19_00512 at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.783 kb on + strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.784 kb on - strand at 516.790 kb on - strand at 516.790 kb on - strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.815 kb on + strand at 516.816 kb on - strand at 516.827 kb on + strand at 516.827 kb on + strand at 516.828 kb on - strand at 516.842 kb on - strand at 516.842 kb on - strand at 516.884 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.919 kb on + strand at 516.920 kb on - strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on + strand at 516.977 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.978 kb on - strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.984 kb on + strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.985 kb on - strand at 516.990 kb on + strand at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.251 kb on + strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513 at 517.252 kb on - strand, within MPMX19_00513
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 514,473 + -0.3 514,474 - +0.1 514,474 - -1.4 514,474 - -0.8 514,543 - +0.1 514,667 + MPMX19_00511 0.30 -0.2 514,668 - MPMX19_00511 0.30 -1.1 514,739 + MPMX19_00511 0.45 +0.1 514,739 + MPMX19_00511 0.45 -0.1 514,739 + MPMX19_00511 0.45 -0.5 514,739 + MPMX19_00511 0.45 -0.7 514,739 + MPMX19_00511 0.45 -1.8 514,739 + MPMX19_00511 0.45 -1.0 514,740 - MPMX19_00511 0.45 +0.3 514,740 - MPMX19_00511 0.45 -1.6 514,740 - MPMX19_00511 0.45 -0.9 514,740 - MPMX19_00511 0.45 -1.1 514,740 - MPMX19_00511 0.45 -0.9 514,763 + MPMX19_00511 0.50 -1.1 514,763 + MPMX19_00511 0.50 -1.2 514,763 + MPMX19_00511 0.50 -1.4 514,764 - MPMX19_00511 0.50 -2.4 514,901 + MPMX19_00511 0.78 -1.1 514,901 + MPMX19_00511 0.78 -0.5 514,902 - MPMX19_00511 0.78 +0.3 515,042 + -0.7 515,042 + +0.2 515,043 - -1.3 515,043 - +0.5 515,043 - -1.3 515,043 - -0.7 515,127 + -0.9 515,127 + -0.8 515,127 + +1.5 515,127 + -0.8 515,127 + -0.8 515,127 + -0.7 515,127 + -1.2 515,127 + -1.4 515,128 - -0.3 515,128 - -0.5 515,128 - +1.1 515,128 - -0.9 515,581 - MPMX19_00512 0.27 -0.2 515,773 + MPMX19_00512 0.38 -0.3 515,773 + MPMX19_00512 0.38 -0.5 515,773 + MPMX19_00512 0.38 -1.0 515,773 + MPMX19_00512 0.38 +0.1 515,773 + MPMX19_00512 0.38 +0.3 515,773 + MPMX19_00512 0.38 +0.4 515,773 + MPMX19_00512 0.38 +0.3 515,773 + MPMX19_00512 0.38 -1.2 515,773 + MPMX19_00512 0.38 +0.1 515,773 + MPMX19_00512 0.38 +0.2 515,773 + MPMX19_00512 0.38 +0.1 515,773 + MPMX19_00512 0.38 +0.3 515,773 + MPMX19_00512 0.38 -1.1 515,773 + MPMX19_00512 0.38 -0.2 515,773 + MPMX19_00512 0.38 -1.1 515,773 + MPMX19_00512 0.38 +0.4 515,773 + MPMX19_00512 0.38 +0.3 515,773 + MPMX19_00512 0.38 -0.6 515,774 - MPMX19_00512 0.38 +0.9 515,774 - MPMX19_00512 0.38 -1.2 515,774 - MPMX19_00512 0.38 -0.2 515,774 - MPMX19_00512 0.38 -1.5 515,774 - MPMX19_00512 0.38 +1.1 515,774 - MPMX19_00512 0.38 +0.5 515,774 - MPMX19_00512 0.38 +1.1 515,774 - MPMX19_00512 0.38 -1.4 515,774 - MPMX19_00512 0.38 -0.7 515,774 - MPMX19_00512 0.38 +0.1 515,774 - MPMX19_00512 0.38 +0.7 515,774 - MPMX19_00512 0.38 +0.8 515,774 - MPMX19_00512 0.38 -0.7 515,774 - MPMX19_00512 0.38 +0.5 515,774 - MPMX19_00512 0.38 +0.3 515,774 - MPMX19_00512 0.38 -0.9 515,774 - MPMX19_00512 0.38 -0.4 515,774 - MPMX19_00512 0.38 -1.1 515,774 - MPMX19_00512 0.38 -0.5 515,774 - MPMX19_00512 0.38 -1.5 515,974 + MPMX19_00512 0.51 +0.1 515,998 + MPMX19_00512 0.52 +0.1 515,998 + MPMX19_00512 0.52 +0.1 515,998 + MPMX19_00512 0.52 -0.5 515,998 + MPMX19_00512 0.52 +0.3 515,998 + MPMX19_00512 0.52 -0.4 515,998 + MPMX19_00512 0.52 +1.3 515,999 - MPMX19_00512 0.52 -0.9 515,999 - MPMX19_00512 0.52 -0.2 515,999 - MPMX19_00512 0.52 -0.0 515,999 - MPMX19_00512 0.52 -1.9 515,999 - MPMX19_00512 0.52 -1.4 515,999 - MPMX19_00512 0.52 -1.6 515,999 - MPMX19_00512 0.52 +0.8 515,999 - MPMX19_00512 0.52 +1.8 515,999 - MPMX19_00512 0.52 -0.1 515,999 - MPMX19_00512 0.52 +0.5 515,999 - MPMX19_00512 0.52 -0.5 515,999 - MPMX19_00512 0.52 +0.3 516,009 + MPMX19_00512 0.53 -0.0 516,009 + MPMX19_00512 0.53 -1.7 516,009 + MPMX19_00512 0.53 -1.3 516,010 - MPMX19_00512 0.53 +0.7 516,010 - MPMX19_00512 0.53 +1.1 516,010 - MPMX19_00512 0.53 -0.4 516,010 - MPMX19_00512 0.53 -1.4 516,010 - MPMX19_00512 0.53 +0.1 516,375 + MPMX19_00512 0.76 +0.1 516,375 + MPMX19_00512 0.76 -0.2 516,376 - MPMX19_00512 0.76 -0.6 516,376 - MPMX19_00512 0.76 -2.3 516,376 - MPMX19_00512 0.76 -0.3 516,412 - MPMX19_00512 0.78 -0.1 516,783 + -1.7 516,783 + -0.8 516,783 + -0.5 516,783 + -2.3 516,784 - +0.2 516,784 - -0.6 516,784 - -0.8 516,790 - -0.7 516,790 - -0.7 516,815 + -1.2 516,815 + -0.2 516,815 + +0.6 516,815 + -0.9 516,816 - +0.2 516,827 + -0.7 516,827 + -1.9 516,828 - -1.7 516,842 - -2.4 516,842 - -0.2 516,884 + +2.1 516,919 + +1.7 516,919 + -0.7 516,919 + -0.1 516,920 - -1.1 516,977 + -0.3 516,977 + +0.3 516,977 + +0.3 516,977 + -1.5 516,977 + +0.6 516,977 + -2.2 516,977 + -1.9 516,977 + -2.4 516,977 + -0.1 516,977 + +0.9 516,977 + -2.1 516,977 + -1.9 516,977 + +0.7 516,977 + -0.4 516,977 - +0.4 516,978 - -0.7 516,978 - -0.3 516,978 - +0.5 516,978 - -0.2 516,978 - -1.6 516,978 - -1.8 516,984 + +0.3 516,984 + +0.5 516,984 + +0.3 516,984 + +0.5 516,984 + +0.1 516,984 + -2.7 516,985 - +0.4 516,985 - -0.9 516,985 - -1.1 516,985 - +0.1 516,985 - -0.7 516,985 - -0.6 516,985 - -0.7 516,985 - -1.4 516,985 - -0.1 516,985 - -1.4 516,985 - -1.0 516,985 - +1.1 516,990 + -0.3 517,251 + MPMX19_00513 0.16 -1.4 517,251 + MPMX19_00513 0.16 -0.2 517,251 + MPMX19_00513 0.16 -0.7 517,251 + MPMX19_00513 0.16 -0.1 517,251 + MPMX19_00513 0.16 -0.8 517,251 + MPMX19_00513 0.16 -0.2 517,251 + MPMX19_00513 0.16 -0.5 517,251 + MPMX19_00513 0.16 -0.4 517,251 + MPMX19_00513 0.16 -0.9 517,252 - MPMX19_00513 0.16 -0.5 517,252 - MPMX19_00513 0.16 +0.3 517,252 - MPMX19_00513 0.16 -0.3 517,252 - MPMX19_00513 0.16 +0.1 517,252 - MPMX19_00513 0.16 -2.5 517,252 - MPMX19_00513 0.16 +0.1 517,252 - MPMX19_00513 0.16 -2.4 517,252 - MPMX19_00513 0.16 -0.7 517,252 - MPMX19_00513 0.16 -1.1 517,252 - MPMX19_00513 0.16 -1.9 517,252 - MPMX19_00513 0.16 -0.3 517,252 - MPMX19_00513 0.16 -0.8 517,252 - MPMX19_00513 0.16 -1.3 517,252 - MPMX19_00513 0.16 -0.7
Or see this region's nucleotide sequence