Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00480 and MPMX19_00481 are separated by 22 nucleotides MPMX19_00481 and MPMX19_00482 are separated by 264 nucleotides
MPMX19_00480: MPMX19_00480 - hypothetical protein, at 477,899 to 481,171
_00480
MPMX19_00481: MPMX19_00481 - hypothetical protein, at 481,194 to 481,952
_00481
MPMX19_00482: MPMX19_00482 - Sensor histidine kinase RcsC, at 482,217 to 483,824
_00482
Position (kb) 481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 480.242 kb on + strand, within MPMX19_00480 at 480.242 kb on + strand, within MPMX19_00480 at 480.242 kb on + strand, within MPMX19_00480 at 480.242 kb on + strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.243 kb on - strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.299 kb on + strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.300 kb on - strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.329 kb on + strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.330 kb on - strand, within MPMX19_00480 at 480.713 kb on + strand, within MPMX19_00480 at 480.713 kb on + strand, within MPMX19_00480 at 480.713 kb on + strand, within MPMX19_00480 at 480.714 kb on - strand, within MPMX19_00480 at 480.714 kb on - strand, within MPMX19_00480 at 480.851 kb on + strand at 480.851 kb on + strand at 480.851 kb on + strand at 480.852 kb on - strand at 480.852 kb on - strand at 480.852 kb on - strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 480.866 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.031 kb on + strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.032 kb on - strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.073 kb on + strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.074 kb on - strand at 481.097 kb on + strand at 481.097 kb on + strand at 481.098 kb on - strand at 481.098 kb on - strand at 481.098 kb on - strand at 481.170 kb on - strand at 481.201 kb on + strand at 481.202 kb on - strand at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.345 kb on + strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.346 kb on - strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.648 kb on + strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.649 kb on - strand, within MPMX19_00481 at 481.869 kb on + strand, within MPMX19_00481 at 481.870 kb on - strand, within MPMX19_00481 at 481.870 kb on - strand, within MPMX19_00481 at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.960 kb on + strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.961 kb on - strand at 481.962 kb on + strand at 481.962 kb on + strand at 481.962 kb on + strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 481.963 kb on - strand at 482.035 kb on + strand at 482.036 kb on - strand at 482.036 kb on - strand at 482.067 kb on + strand at 482.067 kb on + strand at 482.068 kb on - strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.116 kb on + strand at 482.117 kb on - strand at 482.117 kb on - strand at 482.117 kb on - strand at 482.117 kb on - strand at 482.127 kb on + strand at 482.127 kb on + strand at 482.127 kb on + strand at 482.128 kb on - strand at 482.182 kb on + strand at 482.182 kb on + strand at 482.182 kb on + strand at 482.183 kb on - strand at 482.183 kb on - strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.196 kb on + strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.197 kb on - strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.209 kb on + strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.210 kb on - strand at 482.462 kb on + strand, within MPMX19_00482
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 480,242 + MPMX19_00480 0.72 -0.0 480,242 + MPMX19_00480 0.72 -0.5 480,242 + MPMX19_00480 0.72 -0.9 480,242 + MPMX19_00480 0.72 -0.2 480,243 - MPMX19_00480 0.72 -0.6 480,243 - MPMX19_00480 0.72 +1.1 480,243 - MPMX19_00480 0.72 -0.2 480,243 - MPMX19_00480 0.72 -0.9 480,243 - MPMX19_00480 0.72 +0.4 480,243 - MPMX19_00480 0.72 -0.0 480,299 + MPMX19_00480 0.73 -3.2 480,299 + MPMX19_00480 0.73 -0.4 480,299 + MPMX19_00480 0.73 +0.2 480,299 + MPMX19_00480 0.73 -1.7 480,299 + MPMX19_00480 0.73 -0.7 480,299 + MPMX19_00480 0.73 -2.7 480,299 + MPMX19_00480 0.73 -1.4 480,299 + MPMX19_00480 0.73 -0.7 480,299 + MPMX19_00480 0.73 -0.2 480,299 + MPMX19_00480 0.73 -0.2 480,299 + MPMX19_00480 0.73 -1.1 480,299 + MPMX19_00480 0.73 -2.3 480,299 + MPMX19_00480 0.73 +0.4 480,299 + MPMX19_00480 0.73 +0.2 480,299 + MPMX19_00480 0.73 +0.6 480,299 + MPMX19_00480 0.73 -0.5 480,299 + MPMX19_00480 0.73 +0.7 480,299 + MPMX19_00480 0.73 -1.4 480,299 + MPMX19_00480 0.73 +0.6 480,299 + MPMX19_00480 0.73 -0.0 480,299 + MPMX19_00480 0.73 -2.8 480,300 - MPMX19_00480 0.73 -0.6 480,300 - MPMX19_00480 0.73 -1.2 480,300 - MPMX19_00480 0.73 -2.4 480,300 - MPMX19_00480 0.73 +0.1 480,300 - MPMX19_00480 0.73 -0.1 480,300 - MPMX19_00480 0.73 -2.6 480,300 - MPMX19_00480 0.73 -2.4 480,300 - MPMX19_00480 0.73 -1.6 480,300 - MPMX19_00480 0.73 -0.1 480,300 - MPMX19_00480 0.73 +0.6 480,300 - MPMX19_00480 0.73 +0.8 480,300 - MPMX19_00480 0.73 -1.1 480,300 - MPMX19_00480 0.73 -0.7 480,300 - MPMX19_00480 0.73 -0.4 480,300 - MPMX19_00480 0.73 -0.2 480,300 - MPMX19_00480 0.73 +0.3 480,300 - MPMX19_00480 0.73 -1.7 480,300 - MPMX19_00480 0.73 +0.3 480,300 - MPMX19_00480 0.73 -0.0 480,300 - MPMX19_00480 0.73 +0.3 480,300 - MPMX19_00480 0.73 -0.3 480,300 - MPMX19_00480 0.73 -0.0 480,300 - MPMX19_00480 0.73 +0.5 480,300 - MPMX19_00480 0.73 +1.2 480,300 - MPMX19_00480 0.73 +0.1 480,300 - MPMX19_00480 0.73 -0.5 480,300 - MPMX19_00480 0.73 -1.0 480,300 - MPMX19_00480 0.73 +0.7 480,300 - MPMX19_00480 0.73 -1.7 480,300 - MPMX19_00480 0.73 -2.6 480,300 - MPMX19_00480 0.73 -0.4 480,300 - MPMX19_00480 0.73 -1.2 480,300 - MPMX19_00480 0.73 +0.8 480,329 + MPMX19_00480 0.74 +0.9 480,329 + MPMX19_00480 0.74 -0.8 480,329 + MPMX19_00480 0.74 -0.5 480,329 + MPMX19_00480 0.74 -0.1 480,329 + MPMX19_00480 0.74 -1.2 480,329 + MPMX19_00480 0.74 -0.7 480,329 + MPMX19_00480 0.74 -0.7 480,329 + MPMX19_00480 0.74 +0.7 480,329 + MPMX19_00480 0.74 -0.9 480,329 + MPMX19_00480 0.74 -0.5 480,329 + MPMX19_00480 0.74 -1.7 480,329 + MPMX19_00480 0.74 -0.6 480,329 + MPMX19_00480 0.74 -0.2 480,329 + MPMX19_00480 0.74 -1.8 480,329 + MPMX19_00480 0.74 -1.1 480,329 + MPMX19_00480 0.74 -0.1 480,330 - MPMX19_00480 0.74 -0.2 480,330 - MPMX19_00480 0.74 +1.7 480,330 - MPMX19_00480 0.74 -0.1 480,330 - MPMX19_00480 0.74 -0.9 480,330 - MPMX19_00480 0.74 -0.7 480,330 - MPMX19_00480 0.74 +0.1 480,330 - MPMX19_00480 0.74 +1.1 480,713 + MPMX19_00480 0.86 -0.4 480,713 + MPMX19_00480 0.86 -0.2 480,713 + MPMX19_00480 0.86 -0.6 480,714 - MPMX19_00480 0.86 -0.5 480,714 - MPMX19_00480 0.86 -0.9 480,851 + -1.1 480,851 + -1.4 480,851 + -0.0 480,852 - -1.6 480,852 - -1.6 480,852 - -0.7 480,866 + -1.4 480,866 + +1.3 480,866 + -0.1 480,866 + -0.7 480,866 + +1.4 480,866 + +0.1 481,031 + -0.5 481,031 + -1.5 481,031 + -0.6 481,031 + +0.1 481,031 + +0.7 481,031 + +0.9 481,031 + -0.5 481,031 + -0.1 481,031 + -0.5 481,031 + -1.7 481,032 - -1.4 481,032 - -0.2 481,032 - -0.1 481,032 - -0.2 481,032 - -0.5 481,032 - -0.2 481,032 - -1.0 481,032 - -0.9 481,073 + -0.8 481,073 + -0.7 481,073 + -1.3 481,073 + -1.6 481,073 + -0.9 481,073 + +0.5 481,073 + -0.4 481,074 - +0.5 481,074 - -0.8 481,074 - -0.9 481,074 - +0.8 481,074 - -1.6 481,074 - -0.7 481,074 - -0.1 481,074 - +0.4 481,097 + -0.0 481,097 + +0.5 481,098 - -0.9 481,098 - -0.1 481,098 - -2.0 481,170 - +0.1 481,201 + -0.2 481,202 - -1.2 481,345 + MPMX19_00481 0.20 +0.5 481,345 + MPMX19_00481 0.20 +0.3 481,345 + MPMX19_00481 0.20 -1.2 481,345 + MPMX19_00481 0.20 -0.9 481,345 + MPMX19_00481 0.20 -1.7 481,345 + MPMX19_00481 0.20 -1.2 481,345 + MPMX19_00481 0.20 -2.1 481,345 + MPMX19_00481 0.20 -0.8 481,346 - MPMX19_00481 0.20 +0.1 481,346 - MPMX19_00481 0.20 -0.9 481,346 - MPMX19_00481 0.20 +1.1 481,346 - MPMX19_00481 0.20 -1.9 481,346 - MPMX19_00481 0.20 -0.1 481,346 - MPMX19_00481 0.20 -3.0 481,346 - MPMX19_00481 0.20 +0.5 481,346 - MPMX19_00481 0.20 -1.4 481,346 - MPMX19_00481 0.20 +0.4 481,346 - MPMX19_00481 0.20 -1.5 481,346 - MPMX19_00481 0.20 -0.2 481,648 + MPMX19_00481 0.60 -0.3 481,648 + MPMX19_00481 0.60 -0.1 481,648 + MPMX19_00481 0.60 +0.6 481,648 + MPMX19_00481 0.60 -0.7 481,649 - MPMX19_00481 0.60 -0.1 481,649 - MPMX19_00481 0.60 -0.7 481,649 - MPMX19_00481 0.60 -0.6 481,649 - MPMX19_00481 0.60 -1.1 481,649 - MPMX19_00481 0.60 +0.4 481,649 - MPMX19_00481 0.60 -0.2 481,649 - MPMX19_00481 0.60 +0.6 481,869 + MPMX19_00481 0.89 -0.2 481,870 - MPMX19_00481 0.89 +0.0 481,870 - MPMX19_00481 0.89 -0.5 481,960 + -1.6 481,960 + -1.3 481,960 + +0.2 481,960 + +0.5 481,960 + -0.8 481,960 + +0.3 481,960 + +0.5 481,960 + -0.5 481,960 + +0.7 481,960 + -0.4 481,960 + +0.1 481,961 - +1.1 481,961 - -2.1 481,961 - -0.7 481,961 - -0.6 481,961 - -1.6 481,961 - +0.5 481,961 - -2.3 481,961 - -1.6 481,961 - +0.3 481,961 - -0.7 481,961 - +2.1 481,961 - -0.4 481,961 - +0.3 481,961 - -0.5 481,962 + +0.2 481,962 + -0.7 481,962 + +0.3 481,963 - +0.0 481,963 - -0.8 481,963 - -0.7 481,963 - -0.5 481,963 - +0.5 481,963 - +0.2 481,963 - -0.3 481,963 - +0.3 481,963 - -1.0 481,963 - -0.2 482,035 + +0.3 482,036 - -1.4 482,036 - -0.8 482,067 + +0.6 482,067 + -1.0 482,068 - +1.1 482,116 + -1.2 482,116 + +1.3 482,116 + -0.6 482,116 + -0.2 482,116 + -0.3 482,117 - -1.0 482,117 - +0.1 482,117 - +1.3 482,117 - +0.4 482,127 + +0.7 482,127 + -0.5 482,127 + -0.8 482,128 - -0.3 482,182 + -0.7 482,182 + -1.3 482,182 + -0.6 482,183 - -0.2 482,183 - -1.2 482,196 + +0.9 482,196 + -0.2 482,196 + -0.4 482,196 + +0.3 482,196 + -0.7 482,197 - -0.2 482,197 - +0.9 482,197 - +0.5 482,197 - -1.1 482,197 - +0.6 482,197 - -0.1 482,209 + -0.2 482,209 + -1.5 482,209 + -1.1 482,209 + -2.0 482,209 + -1.6 482,209 + -1.1 482,209 + -0.7 482,209 + +1.1 482,209 + -0.6 482,209 + +1.1 482,209 + +0.1 482,209 + -0.4 482,210 - -0.1 482,210 - +0.2 482,210 - -1.5 482,210 - -0.9 482,210 - +0.3 482,210 - +0.4 482,210 - -0.2 482,210 - -1.2 482,210 - -1.0 482,210 - +1.6 482,210 - +0.4 482,210 - -1.6 482,210 - -1.4 482,210 - -0.0 482,210 - -1.4 482,210 - -2.1 482,210 - +0.5 482,462 + MPMX19_00482 0.15 +0.1
Or see this region's nucleotide sequence