Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00477 and MPMX19_00478 are separated by 86 nucleotides MPMX19_00478 and MPMX19_00479 are separated by 162 nucleotides MPMX19_00479 and MPMX19_00480 are separated by 433 nucleotides
MPMX19_00477: MPMX19_00477 - Glutaredoxin 4, at 475,346 to 475,681
_00477
MPMX19_00478: MPMX19_00478 - putative protein RP812, at 475,768 to 476,007
_00478
MPMX19_00479: MPMX19_00479 - Adenylosuccinate lyase, at 476,170 to 477,465
_00479
MPMX19_00480: MPMX19_00480 - hypothetical protein, at 477,899 to 481,171
_00480
Position (kb) 476
477
478 Strain fitness (log2 ratio) -2
-1
0
1
2 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.911 kb on - strand, within MPMX19_00478 at 475.911 kb on - strand, within MPMX19_00478 at 476.057 kb on - strand at 476.057 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.172 kb on - strand at 476.172 kb on - strand at 476.172 kb on - strand at 477.537 kb on - strand at 477.537 kb on - strand at 477.537 kb on - strand at 477.537 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.558 kb on - strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.625 kb on + strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.626 kb on - strand at 477.654 kb on + strand at 477.654 kb on + strand at 477.670 kb on + strand at 477.670 kb on + strand at 477.670 kb on + strand at 477.670 kb on + strand at 477.962 kb on + strand at 477.962 kb on + strand at 477.962 kb on + strand at 477.963 kb on - strand at 477.963 kb on - strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.025 kb on + strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.026 kb on - strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.085 kb on + strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.086 kb on - strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.139 kb on + strand at 478.140 kb on - strand at 478.140 kb on - strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.148 kb on + strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.149 kb on - strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.211 kb on + strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.212 kb on - strand at 478.325 kb on + strand, within MPMX19_00480 at 478.325 kb on + strand, within MPMX19_00480 at 478.325 kb on + strand, within MPMX19_00480 at 478.325 kb on + strand, within MPMX19_00480 at 478.326 kb on - strand, within MPMX19_00480 at 478.326 kb on - strand, within MPMX19_00480 at 478.326 kb on - strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.328 kb on + strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480 at 478.329 kb on - strand, within MPMX19_00480
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 475,845 - MPMX19_00478 0.32 +0.7 475,845 - MPMX19_00478 0.32 +0.1 475,845 - MPMX19_00478 0.32 -0.8 475,845 - MPMX19_00478 0.32 +0.1 475,845 - MPMX19_00478 0.32 +1.5 475,911 - MPMX19_00478 0.60 +0.7 475,911 - MPMX19_00478 0.60 -0.4 476,057 - +0.3 476,057 - -0.2 476,065 - -0.8 476,065 - +0.7 476,065 - -1.4 476,065 - -0.3 476,065 - -1.2 476,065 - -0.7 476,065 - -0.2 476,065 - -0.7 476,065 - -1.3 476,065 - +0.1 476,065 - -2.0 476,065 - -0.8 476,065 - -1.9 476,065 - -0.0 476,065 - -0.1 476,065 - -0.7 476,070 - -0.6 476,070 - -0.6 476,070 - -0.2 476,070 - +0.0 476,070 - -1.4 476,070 - +0.1 476,070 - -0.2 476,070 - -2.0 476,070 - +0.3 476,070 - +0.7 476,070 - -1.4 476,070 - -0.7 476,070 - +0.6 476,070 - -0.3 476,070 - -0.7 476,070 - -0.3 476,070 - -1.1 476,070 - -0.3 476,070 - -0.2 476,172 - +0.5 476,172 - -1.4 476,172 - +0.5 477,537 - -1.9 477,537 - +0.9 477,537 - -0.3 477,537 - -0.1 477,558 - +0.8 477,558 - -0.7 477,558 - -1.9 477,558 - +1.1 477,558 - -1.2 477,625 + +0.9 477,625 + -0.7 477,625 + -0.5 477,625 + +0.1 477,625 + +0.5 477,626 - +0.1 477,626 - -0.2 477,626 - -0.9 477,626 - -0.5 477,626 - -0.2 477,626 - -0.8 477,626 - +0.4 477,626 - +1.0 477,626 - -0.2 477,626 - -1.6 477,654 + +1.3 477,654 + -0.7 477,670 + -2.2 477,670 + -1.4 477,670 + +0.5 477,670 + +0.5 477,962 + +0.1 477,962 + +1.5 477,962 + -0.2 477,963 - -0.2 477,963 - -0.9 478,025 + -0.7 478,025 + -1.4 478,025 + +0.2 478,025 + -0.1 478,025 + -1.7 478,025 + -0.8 478,025 + +0.1 478,025 + -0.2 478,025 + -2.2 478,025 + -2.4 478,025 + -0.3 478,025 + -0.3 478,025 + -0.5 478,025 + -0.5 478,025 + -1.0 478,025 + -0.7 478,026 - -1.4 478,026 - -1.8 478,026 - +1.8 478,026 - -0.5 478,026 - -1.5 478,026 - -0.2 478,026 - -1.6 478,026 - +0.5 478,026 - -2.0 478,026 - +0.3 478,026 - -1.7 478,026 - -0.1 478,085 + -1.2 478,085 + -0.1 478,085 + -1.0 478,085 + -1.0 478,085 + -0.1 478,085 + +0.1 478,085 + -0.4 478,085 + +1.1 478,086 - +0.1 478,086 - +0.0 478,086 - +0.0 478,086 - +0.3 478,086 - -0.4 478,086 - -0.6 478,086 - +0.1 478,086 - -0.6 478,086 - -1.6 478,139 + -0.1 478,139 + -1.1 478,139 + +0.9 478,139 + -0.9 478,139 + +0.2 478,139 + -0.4 478,139 + -0.5 478,140 - -0.9 478,140 - +0.8 478,148 + -0.1 478,148 + -1.8 478,148 + +0.7 478,148 + -1.1 478,148 + -0.6 478,148 + -0.5 478,148 + -0.7 478,148 + -2.0 478,148 + +0.1 478,148 + +2.1 478,148 + -0.8 478,148 + -0.7 478,149 - +0.5 478,149 - -0.7 478,149 - +0.2 478,149 - -1.0 478,149 - +0.8 478,149 - -0.4 478,149 - -1.0 478,149 - +0.8 478,149 - -0.5 478,149 - -0.4 478,149 - -0.5 478,149 - -0.7 478,149 - -1.7 478,149 - -0.2 478,149 - -1.1 478,211 + +1.0 478,211 + -1.5 478,211 + -0.2 478,211 + -1.4 478,211 + -0.0 478,211 + -0.7 478,211 + -0.3 478,211 + +0.3 478,212 - -1.8 478,212 - -0.1 478,212 - +0.3 478,212 - -0.2 478,212 - -0.1 478,212 - -0.5 478,212 - -1.1 478,212 - -0.2 478,212 - -0.6 478,212 - -0.7 478,212 - +0.2 478,212 - +1.5 478,212 - -0.2 478,212 - -0.5 478,212 - -0.2 478,212 - -0.2 478,212 - -0.4 478,212 - -0.2 478,325 + MPMX19_00480 0.13 -2.2 478,325 + MPMX19_00480 0.13 +1.3 478,325 + MPMX19_00480 0.13 +0.5 478,325 + MPMX19_00480 0.13 -0.7 478,326 - MPMX19_00480 0.13 -1.1 478,326 - MPMX19_00480 0.13 -0.5 478,326 - MPMX19_00480 0.13 +1.3 478,328 + MPMX19_00480 0.13 +0.5 478,328 + MPMX19_00480 0.13 -0.9 478,328 + MPMX19_00480 0.13 -0.7 478,328 + MPMX19_00480 0.13 -0.2 478,328 + MPMX19_00480 0.13 +1.5 478,328 + MPMX19_00480 0.13 -1.1 478,328 + MPMX19_00480 0.13 -1.7 478,328 + MPMX19_00480 0.13 -1.4 478,328 + MPMX19_00480 0.13 -0.6 478,328 + MPMX19_00480 0.13 +0.2 478,328 + MPMX19_00480 0.13 -0.9 478,328 + MPMX19_00480 0.13 -0.0 478,328 + MPMX19_00480 0.13 -0.6 478,328 + MPMX19_00480 0.13 +1.1 478,328 + MPMX19_00480 0.13 -0.9 478,328 + MPMX19_00480 0.13 -1.6 478,328 + MPMX19_00480 0.13 +0.3 478,328 + MPMX19_00480 0.13 -1.3 478,328 + MPMX19_00480 0.13 -0.2 478,328 + MPMX19_00480 0.13 -0.2 478,328 + MPMX19_00480 0.13 +0.5 478,328 + MPMX19_00480 0.13 -0.5 478,328 + MPMX19_00480 0.13 -1.9 478,328 + MPMX19_00480 0.13 -0.0 478,328 + MPMX19_00480 0.13 -0.3 478,328 + MPMX19_00480 0.13 -0.2 478,328 + MPMX19_00480 0.13 +1.1 478,328 + MPMX19_00480 0.13 -1.2 478,329 - MPMX19_00480 0.13 -0.3 478,329 - MPMX19_00480 0.13 -1.2 478,329 - MPMX19_00480 0.13 -1.1 478,329 - MPMX19_00480 0.13 -1.9 478,329 - MPMX19_00480 0.13 -1.4 478,329 - MPMX19_00480 0.13 +0.7 478,329 - MPMX19_00480 0.13 -1.7 478,329 - MPMX19_00480 0.13 -0.1 478,329 - MPMX19_00480 0.13 +0.3 478,329 - MPMX19_00480 0.13 +0.3 478,329 - MPMX19_00480 0.13 -0.5 478,329 - MPMX19_00480 0.13 +0.2 478,329 - MPMX19_00480 0.13 +0.3 478,329 - MPMX19_00480 0.13 +1.7 478,329 - MPMX19_00480 0.13 +1.8 478,329 - MPMX19_00480 0.13 -2.0
Or see this region's nucleotide sequence