Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00476 and MPMX19_00477 are separated by 191 nucleotides MPMX19_00477 and MPMX19_00478 are separated by 86 nucleotides MPMX19_00478 and MPMX19_00479 are separated by 162 nucleotides
MPMX19_00476: MPMX19_00476 - Protein RarD, at 474,228 to 475,154
_00476
MPMX19_00477: MPMX19_00477 - Glutaredoxin 4, at 475,346 to 475,681
_00477
MPMX19_00478: MPMX19_00478 - putative protein RP812, at 475,768 to 476,007
_00478
MPMX19_00479: MPMX19_00479 - Adenylosuccinate lyase, at 476,170 to 477,465
_00479
Position (kb) 475
476
477 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.811 kb on + strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 474.812 kb on - strand, within MPMX19_00476 at 475.081 kb on + strand at 475.081 kb on + strand at 475.081 kb on + strand at 475.081 kb on + strand at 475.081 kb on + strand at 475.081 kb on + strand at 475.081 kb on + strand at 475.081 kb on + strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.082 kb on - strand at 475.154 kb on + strand at 475.155 kb on - strand at 475.165 kb on + strand at 475.165 kb on + strand at 475.166 kb on - strand at 475.166 kb on - strand at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.845 kb on - strand, within MPMX19_00478 at 475.911 kb on - strand, within MPMX19_00478 at 475.911 kb on - strand, within MPMX19_00478 at 476.057 kb on - strand at 476.057 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.065 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.070 kb on - strand at 476.172 kb on - strand at 476.172 kb on - strand at 476.172 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 474,811 + MPMX19_00476 0.63 -0.4 474,811 + MPMX19_00476 0.63 -2.9 474,811 + MPMX19_00476 0.63 -0.6 474,811 + MPMX19_00476 0.63 -0.5 474,811 + MPMX19_00476 0.63 -1.1 474,811 + MPMX19_00476 0.63 +0.3 474,811 + MPMX19_00476 0.63 -0.1 474,811 + MPMX19_00476 0.63 -0.4 474,811 + MPMX19_00476 0.63 -0.2 474,811 + MPMX19_00476 0.63 -1.0 474,812 - MPMX19_00476 0.63 +1.4 474,812 - MPMX19_00476 0.63 +0.9 474,812 - MPMX19_00476 0.63 -0.9 474,812 - MPMX19_00476 0.63 +0.4 474,812 - MPMX19_00476 0.63 +0.1 474,812 - MPMX19_00476 0.63 -2.1 474,812 - MPMX19_00476 0.63 -1.3 474,812 - MPMX19_00476 0.63 -0.0 474,812 - MPMX19_00476 0.63 +1.5 474,812 - MPMX19_00476 0.63 -2.1 475,081 + +0.3 475,081 + -0.1 475,081 + +0.3 475,081 + -0.6 475,081 + -1.0 475,081 + -1.2 475,081 + -0.5 475,081 + -1.7 475,082 - -1.1 475,082 - +0.1 475,082 - -0.1 475,082 - -1.2 475,082 - -0.4 475,082 - -0.2 475,082 - -0.7 475,082 - +0.8 475,154 + -0.1 475,155 - -1.2 475,165 + -0.9 475,165 + -0.7 475,166 - -0.5 475,166 - -1.5 475,845 - MPMX19_00478 0.32 +0.7 475,845 - MPMX19_00478 0.32 +0.1 475,845 - MPMX19_00478 0.32 -0.8 475,845 - MPMX19_00478 0.32 +0.1 475,845 - MPMX19_00478 0.32 +1.5 475,911 - MPMX19_00478 0.60 +0.7 475,911 - MPMX19_00478 0.60 -0.4 476,057 - +0.3 476,057 - -0.2 476,065 - -0.8 476,065 - +0.7 476,065 - -1.4 476,065 - -0.3 476,065 - -1.2 476,065 - -0.7 476,065 - -0.2 476,065 - -0.7 476,065 - -1.3 476,065 - +0.1 476,065 - -2.0 476,065 - -0.8 476,065 - -1.9 476,065 - -0.0 476,065 - -0.1 476,065 - -0.7 476,070 - -0.6 476,070 - -0.6 476,070 - -0.2 476,070 - +0.0 476,070 - -1.4 476,070 - +0.1 476,070 - -0.2 476,070 - -2.0 476,070 - +0.3 476,070 - +0.7 476,070 - -1.4 476,070 - -0.7 476,070 - +0.6 476,070 - -0.3 476,070 - -0.7 476,070 - -0.3 476,070 - -1.1 476,070 - -0.3 476,070 - -0.2 476,172 - +0.5 476,172 - -1.4 476,172 - +0.5
Or see this region's nucleotide sequence